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Items: 22

1.

The primacy of NF1 loss as the driver of tumorigenesis in neurofibromatosis type 1-associated plexiform neurofibromas.

Pemov A, Li H, Patidar R, Hansen NF, Sindiri S, Hartley SW, Wei JS, Elkahloun A, Chandrasekharappa SC; NISC Comparative Sequencing Program, Boland JF, Bass S; NCI DCEG Cancer Genomics Research Laboratory, Mullikin JC, Khan J, Widemann BC, Wallace MR, Stewart DR.

Oncogene. 2017 Jun 1;36(22):3168-3177. doi: 10.1038/onc.2016.464. Epub 2017 Jan 9.

PMID:
28068329
2.

Alternative Isoform Analysis of Ttc8 Expression in the Rat Pineal Gland Using a Multi-Platform Sequencing Approach Reveals Neural Regulation.

Hartley SW, Mullikin JC, Klein DC, Park M; NISC Comparative Sequencing Program, Coon SL.

PLoS One. 2016 Sep 29;11(9):e0163590. doi: 10.1371/journal.pone.0163590. eCollection 2016.

3.

Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq.

Hartley SW, Mullikin JC.

Nucleic Acids Res. 2016 Sep 6;44(15):e127. doi: 10.1093/nar/gkw501. Epub 2016 Jun 1.

4.

Neurotranscriptomics: The Effects of Neonatal Stimulus Deprivation on the Rat Pineal Transcriptome.

Hartley SW, Coon SL, Savastano LE, Mullikin JC; NISC Comparative Sequencing Program, Fu C, Klein DC.

PLoS One. 2015 Sep 14;10(9):e0137548. doi: 10.1371/journal.pone.0137548. eCollection 2015.

5.

QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments.

Hartley SW, Mullikin JC.

BMC Bioinformatics. 2015 Jul 19;16:224. doi: 10.1186/s12859-015-0670-5.

6.

A GCH1 haplotype confers sex-specific susceptibility to pain crises and altered endothelial function in adults with sickle cell anemia.

Belfer I, Youngblood V, Darbari DS, Wang Z, Diaw L, Freeman L, Desai K, Dizon M, Allen D, Cunnington C, Channon KM, Milton J, Hartley SW, Nolan V, Kato GJ, Steinberg MH, Goldman D, Taylor JG 6th.

Am J Hematol. 2014 Feb;89(2):187-93. doi: 10.1002/ajh.23613.

7.

PleioGRiP: genetic risk prediction with pleiotropy.

Hartley SW, Sebastiani P.

Bioinformatics. 2013 Apr 15;29(8):1086-8. doi: 10.1093/bioinformatics/btt081. Epub 2013 Feb 17.

8.

Bayesian methods for multivariate modeling of pleiotropic SNP associations and genetic risk prediction.

Hartley SW, Monti S, Liu CT, Steinberg MH, Sebastiani P.

Front Genet. 2012 Sep 11;3:176. doi: 10.3389/fgene.2012.00176. eCollection 2012.

9.

A genome-wide association study of total bilirubin and cholelithiasis risk in sickle cell anemia.

Milton JN, Sebastiani P, Solovieff N, Hartley SW, Bhatnagar P, Arking DE, Dworkis DA, Casella JF, Barron-Casella E, Bean CJ, Hooper WC, DeBaun MR, Garrett ME, Soldano K, Telen MJ, Ashley-Koch A, Gladwin MT, Baldwin CT, Steinberg MH, Klings ES.

PLoS One. 2012;7(4):e34741. doi: 10.1371/journal.pone.0034741. Epub 2012 Apr 27.

10.

Genetic signatures of exceptional longevity in humans.

Sebastiani P, Solovieff N, Dewan AT, Walsh KM, Puca A, Hartley SW, Melista E, Andersen S, Dworkis DA, Wilk JB, Myers RH, Steinberg MH, Montano M, Baldwin CT, Hoh J, Perls TT.

PLoS One. 2012;7(1):e29848. doi: 10.1371/journal.pone.0029848. Epub 2012 Jan 18.

11.

Retraction.

Sebastiani P, Solovieff N, Puca A, Hartley SW, Melista E, Andersen S, Dworkis DA, Wilk JB, Myers RH, Steinberg MH, Montano M, Baldwin CT, Perls TT.

Science. 2011 Jul 22;333(6041):404. doi: 10.1126/science.333.6041.404-a. No abstract available.

PMID:
21778381
12.

Ancestry of African Americans with sickle cell disease.

Solovieff N, Hartley SW, Baldwin CT, Klings ES, Gladwin MT, Taylor JG 6th, Kato GJ, Farrer LA, Steinberg MH, Sebastiani P.

Blood Cells Mol Dis. 2011 Jun 15;47(1):41-5. doi: 10.1016/j.bcmd.2011.04.002. Epub 2011 May 4.

13.

Severe sickle cell anemia is associated with increased plasma levels of TNF-R1 and VCAM-1.

Dworkis DA, Klings ES, Solovieff N, Li G, Milton JN, Hartley SW, Melista E, Parente J, Sebastiani P, Steinberg MH, Baldwin CT.

Am J Hematol. 2011 Feb;86(2):220-3. doi: 10.1002/ajh.21928.

14.

Clustering by genetic ancestry using genome-wide SNP data.

Solovieff N, Hartley SW, Baldwin CT, Perls TT, Steinberg MH, Sebastiani P.

BMC Genet. 2010 Dec 9;11:108. doi: 10.1186/1471-2156-11-108.

15.

Hippocampal morphometry in population-based incident Alzheimer's disease and vascular dementia: the HAAS.

Scher AI, Xu Y, Korf ES, Hartley SW, Witter MP, Scheltens P, White LR, Thompson PM, Toga AW, Valentino DJ, Launer LJ.

J Neurol Neurosurg Psychiatry. 2011 Apr;82(4):373-6. doi: 10.1136/jnnp.2008.165902. Epub 2010 Sep 8.

16.

Genetic signatures of exceptional longevity in humans.

Sebastiani P, Solovieff N, Puca A, Hartley SW, Melista E, Andersen S, Dworkis DA, Wilk JB, Myers RH, Steinberg MH, Montano M, Baldwin CT, Perls TT.

Science. 2010 Jul 1;2010. doi: 10.1126/science.1190532. Epub 2010 Jul 1. Retraction in: Sebastiani P, Solovieff N, Puca A, Hartley SW, Melista E, Andersen S, Dworkis DA, Wilk JB, Myers RH, Steinberg MH, Montano M, Baldwin CT, Perls TT. Science. 2011 Jul 22;333(6041):404.

PMID:
20595579
17.

Genetic modifiers of the severity of sickle cell anemia identified through a genome-wide association study.

Sebastiani P, Solovieff N, Hartley SW, Milton JN, Riva A, Dworkis DA, Melista E, Klings ES, Garrett ME, Telen MJ, Ashley-Koch A, Baldwin CT, Steinberg MH.

Am J Hematol. 2010 Jan;85(1):29-35. doi: 10.1002/ajh.21572.

18.

Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.

Solovieff N, Milton JN, Hartley SW, Sherva R, Sebastiani P, Dworkis DA, Klings ES, Farrer LA, Garrett ME, Ashley-Koch A, Telen MJ, Fucharoen S, Ha SY, Li CK, Chui DH, Baldwin CT, Steinberg MH.

Blood. 2010 Mar 4;115(9):1815-22. doi: 10.1182/blood-2009-08-239517. Epub 2009 Dec 16.

19.

Imputation of missing genotypes: an empirical evaluation of IMPUTE.

Zhao Z, Timofeev N, Hartley SW, Chui DH, Fucharoen S, Perls TT, Steinberg MH, Baldwin CT, Sebastiani P.

BMC Genet. 2008 Dec 12;9:85. doi: 10.1186/1471-2156-9-85.

20.

A hierarchical and modular approach to the discovery of robust associations in genome-wide association studies from pooled DNA samples.

Sebastiani P, Zhao Z, Abad-Grau MM, Riva A, Hartley SW, Sedgewick AE, Doria A, Montano M, Melista E, Terry D, Perls TT, Steinberg MH, Baldwin CT.

BMC Genet. 2008 Jan 14;9:6. doi: 10.1186/1471-2156-9-6.

21.

Hippocampal shape analysis in Alzheimer's disease: a population-based study.

Scher AI, Xu Y, Korf ES, White LR, Scheltens P, Toga AW, Thompson PM, Hartley SW, Witter MP, Valentino DJ, Launer LJ.

Neuroimage. 2007 May 15;36(1):8-18. Epub 2007 Mar 12.

PMID:
17434756
22.

Analysis and validation of automated skull stripping tools: a validation study based on 296 MR images from the Honolulu Asia aging study.

Hartley SW, Scher AI, Korf ES, White LR, Launer LJ.

Neuroimage. 2006 May 1;30(4):1179-86. Epub 2006 Jan 11.

PMID:
16376107

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