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Items: 15

1.

Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice.

Choi JY, Lye ZN, Groen SC, Dai X, Rughani P, Zaaijer S, Harrington ED, Juul S, Purugganan MD.

Genome Biol. 2020 Feb 5;21(1):21. doi: 10.1186/s13059-020-1938-2.

2.

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing.

Burton AS, Stahl SE, John KK, Jain M, Juul S, Turner DJ, Harrington ED, Stoddart D, Paten B, Akeson M, Castro-Wallace SL.

Genes (Basel). 2020 Jan 9;11(1). pii: E76. doi: 10.3390/genes11010076.

3.

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC.

Genome Res. 2012 Jun;22(6):1107-19. doi: 10.1101/gr.131482.111. Epub 2012 Mar 20.

4.

SmashCell: a software framework for the analysis of single-cell amplified genome sequences.

Harrington ED, Arumugam M, Raes J, Bork P, Relman DA.

Bioinformatics. 2010 Dec 1;26(23):2979-80. doi: 10.1093/bioinformatics/btq564. Epub 2010 Oct 21.

5.

SmashCommunity: a metagenomic annotation and analysis tool.

Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P.

Bioinformatics. 2010 Dec 1;26(23):2977-8. doi: 10.1093/bioinformatics/btq536. Epub 2010 Oct 19.

PMID:
20959381
6.

A network of conserved co-occurring motifs for the regulation of alternative splicing.

Suyama M, Harrington ED, Vinokourova S, von Knebel Doeberitz M, Ohara O, Bork P.

Nucleic Acids Res. 2010 Dec;38(22):7916-26. doi: 10.1093/nar/gkq705. Epub 2010 Aug 11.

7.

Sircah: a tool for the detection and visualization of alternative transcripts.

Harrington ED, Bork P.

Bioinformatics. 2008 Sep 1;24(17):1959-60. doi: 10.1093/bioinformatics/btn361. Epub 2008 Jul 17.

PMID:
18635569
8.

Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?

Pallejà A, Harrington ED, Bork P.

BMC Genomics. 2008 Jul 15;9:335. doi: 10.1186/1471-2164-9-335.

9.

A molecular study of microbe transfer between distant environments.

Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P.

PLoS One. 2008 Jul 9;3(7):e2607. doi: 10.1371/journal.pone.0002607.

10.

Predicting biological networks from genomic data.

Harrington ED, Jensen LJ, Bork P.

FEBS Lett. 2008 Apr 9;582(8):1251-8. doi: 10.1016/j.febslet.2008.02.033. Epub 2008 Feb 21. Review.

11.

Quantitative assessment of protein function prediction from metagenomics shotgun sequences.

Harrington ED, Singh AH, Doerks T, Letunic I, von Mering C, Jensen LJ, Raes J, Bork P.

Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13913-8. Epub 2007 Aug 23.

12.

Protein function space: viewing the limits or limited by our view?

Raes J, Harrington ED, Singh AH, Bork P.

Curr Opin Struct Biol. 2007 Jun;17(3):362-9. Epub 2007 Jun 15. Review.

PMID:
17574832
13.

Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.

Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P.

Nucleic Acids Res. 2005 Feb 16;33(3):946-54. Print 2005.

14.

Complex genomic rearrangements lead to novel primate gene function.

Ciccarelli FD, von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P.

Genome Res. 2005 Mar;15(3):343-51. Epub 2005 Feb 14.

15.

A procedure for hospital admission designed as a model for training residents in patient care.

CECIL HS, BRIDGERS JD, HARRINGTON ED.

J Pediatr. 1961 Dec;59:958-65. No abstract available.

PMID:
13877584

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