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Response to Comment on "Mucus Microbiome of Anastomotic Tissue During Surgery Has Predictive Value for Colorectal Anastomotic Leakage".

van Praagh JB, de Goffau MC, Harmsen HJM, Havenga K.

Ann Surg. 2019 May;269(5):e69-e70. doi: 10.1097/SLA.0000000000002857. No abstract available.


Short Chain Fatty Acids (SCFAs)-Mediated Gut Epithelial and Immune Regulation and Its Relevance for Inflammatory Bowel Diseases.

Parada Venegas D, De la Fuente MK, Landskron G, González MJ, Quera R, Dijkstra G, Harmsen HJM, Faber KN, Hermoso MA.

Front Immunol. 2019 Mar 11;10:277. doi: 10.3389/fimmu.2019.00277. eCollection 2019. Review.


Assessing intestinal permeability in Crohn's disease patients using orally administered 52Cr-EDTA.

von Martels JZH, Bourgonje AR, Harmsen HJM, Faber KN, Dijkstra G.

PLoS One. 2019 Feb 7;14(2):e0211973. doi: 10.1371/journal.pone.0211973. eCollection 2019.


Normal vaginal microbiome in women with primary Sjögren's syndrome-associated vaginal dryness.

van der Meulen TA, van Nimwegen JF, Harmsen HJM, Liefers SC, van der Tuuk K, Kroese FGM, Mourits MJE, Vissink A, Bootsma H.

Ann Rheum Dis. 2019 May;78(5):707-709. doi: 10.1136/annrheumdis-2018-214404. Epub 2018 Nov 28. No abstract available.


Absence of Intestinal Microbiota during Gestation and Lactation Does Not Alter the Metabolic Response to a Western-type Diet in Adulthood.

Lohuis MAM, Werkman CCN, Harmsen HJM, Tietge UJF, Verkade HJ.

Mol Nutr Food Res. 2019 Feb;63(3):e1800809. doi: 10.1002/mnfr.201800809. Epub 2018 Dec 5.


Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus.

van der Meulen TA, Harmsen HJM, Vila AV, Kurilshikov A, Liefers SC, Zhernakova A, Fu J, Wijmenga C, Weersma RK, de Leeuw K, Bootsma H, Spijkervet FKL, Vissink A, Kroese FGM.

J Autoimmun. 2019 Feb;97:77-87. doi: 10.1016/j.jaut.2018.10.009. Epub 2018 Nov 9.


Targeted Diet Modification Reduces Multiple Sclerosis-like Disease in Adult Marmoset Monkeys from an Outbred Colony.

Kap YS, Bus-Spoor C, van Driel N, Dubbelaar ML, Grit C, Kooistra SM, Fagrouch ZC, Verschoor EJ, Bauer J, Eggen BJL, Harmsen HJM, Laman JD, 't Hart BA.

J Immunol. 2018 Dec 1;201(11):3229-3243. doi: 10.4049/jimmunol.1800822. Epub 2018 Oct 19.


Talk to your gut: the oral-gut microbiome axis and its immunomodulatory role in the etiology of rheumatoid arthritis.

du Teil Espina M, Gabarrini G, Harmsen HJM, Westra J, van Winkelhoff AJ, van Dijl JM.

FEMS Microbiol Rev. 2019 Jan 1;43(1):1-18. doi: 10.1093/femsre/fuy035. Review.


Dysbiosis of the buccal mucosa microbiome in primary Sjögren's syndrome patients.

van der Meulen TA, Harmsen HJM, Bootsma H, Liefers SC, Vich Vila A, Zhernakova A, Fu J, Wijmenga C, Spijkervet FKL, Kroese FGM, Vissink A.

Rheumatology (Oxford). 2018 Dec 1;57(12):2225-2234. doi: 10.1093/rheumatology/key215.


Response to "Letter to the Editor for Mucus Microbiome Composition as a Predictor for Colorectal Anastomotic Leakage".

van Praagh JB, de Goffau MC, Harmsen HJM, Havenga K.

Ann Surg. 2018 Jun 18. doi: 10.1097/SLA.0000000000002857. [Epub ahead of print] No abstract available.


The role of the microbiome for human health: from basic science to clinical applications.

Mohajeri MH, Brummer RJM, Rastall RA, Weersma RK, Harmsen HJM, Faas M, Eggersdorfer M.

Eur J Nutr. 2018 May;57(Suppl 1):1-14. doi: 10.1007/s00394-018-1703-4.


Reduced salivary secretion contributes more to changes in the oral microbiome of patients with primary Sjögren's syndrome than underlying disease.

van der Meulen TA, Harmsen HJM, Bootsma H, Liefers SC, Vich Vila A, Zhernakova A, Weersma RK, Spijkervet FKL, Kroese FGM, Vissink A.

Ann Rheum Dis. 2018 Oct;77(10):1542-1544. doi: 10.1136/annrheumdis-2018-213026. Epub 2018 Mar 23. No abstract available.


Mucus Microbiome of Anastomotic Tissue During Surgery Has Predictive Value for Colorectal Anastomotic Leakage.

van Praagh JB, de Goffau MC, Bakker IS, van Goor H, Harmsen HJM, Olinga P, Havenga K.

Ann Surg. 2019 May;269(5):911-916. doi: 10.1097/SLA.0000000000002651.


Conserved Citrullinating Exoenzymes in Porphyromonas Species.

Gabarrini G, Chlebowicz MA, Vega Quiroz ME, Veloo ACM, Rossen JWA, Harmsen HJM, Laine ML, van Dijl JM, van Winkelhoff AJ.

J Dent Res. 2018 May;97(5):556-562. doi: 10.1177/0022034517747575. Epub 2018 Jan 3.


Recent Development of Prebiotic Research-Statement from an Expert Workshop.

La Fata G, Rastall RA, Lacroix C, Harmsen HJM, Mohajeri MH, Weber P, Steinert RE.

Nutrients. 2017 Dec 20;9(12). pii: E1376. doi: 10.3390/nu9121376.


The tongue microbiome in healthy subjects and patients with intra-oral halitosis.

Seerangaiyan K, van Winkelhoff AJ, Harmsen HJM, Rossen JWA, Winkel EG.

J Breath Res. 2017 Sep 6;11(3):036010. doi: 10.1088/1752-7163/aa7c24.


Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures.

Timmerman HM, Rutten NBMM, Boekhorst J, Saulnier DM, Kortman GAM, Contractor N, Kullen M, Floris E, Harmsen HJM, Vlieger AM, Kleerebezem M, Rijkers GT.

Sci Rep. 2017 Aug 21;7(1):8327. doi: 10.1038/s41598-017-08268-4.


The role of gut microbiota in health and disease: In vitro modeling of host-microbe interactions at the aerobe-anaerobe interphase of the human gut.

von Martels JZH, Sadaghian Sadabad M, Bourgonje AR, Blokzijl T, Dijkstra G, Faber KN, Harmsen HJM.

Anaerobe. 2017 Apr;44:3-12. doi: 10.1016/j.anaerobe.2017.01.001. Epub 2017 Jan 3. Review.


The prebiotic concept and human health: a changing landscape with riboflavin as a novel prebiotic candidate?

Steinert RE, Sadaghian Sadabad M, Harmsen HJ, Weber P.

Eur J Clin Nutr. 2016 Dec;70(12):1461. doi: 10.1038/ejcn.2016.141. No abstract available.


Identification of bacterial invasion in necrotizing enterocolitis specimens using fluorescent in situ hybridization.

Heida FH, Harmsen HJ, Timmer A, Kooi EM, Bos AF, Hulscher JB.

J Perinatol. 2017 Jan;37(1):67-72. doi: 10.1038/jp.2016.165. Epub 2016 Sep 29.


The prebiotic concept and human health: a changing landscape with riboflavin as a novel prebiotic candidate?

Steinert RE, Sadaghian Sadabad M, Harmsen HJ, Weber P.

Eur J Clin Nutr. 2016 Dec;70(12):1348-1353. doi: 10.1038/ejcn.2016.119. Epub 2016 Jul 6. Review. Erratum in: Eur J Clin Nutr. 2016 Dec;70(12 ):1461.


The Human Gut Microbiota.

Harmsen HJ, de Goffau MC.

Adv Exp Med Biol. 2016;902:95-108. doi: 10.1007/978-3-319-31248-4_7. Review.


Reply to Cassir et al.

Heida FH, van Zoonen AG, Hulscher JB, Te Kiefte BJ, Wessels R, Kooi EM, Bos AF, Harmsen HJ, de Goffau MC.

Clin Infect Dis. 2016 Jun 15;62(12):1618-20. doi: 10.1093/cid/ciw205. Epub 2016 Apr 3. No abstract available.


A Necrotizing Enterocolitis-Associated Gut Microbiota Is Present in the Meconium: Results of a Prospective Study.

Heida FH, van Zoonen AGJF, Hulscher JBF, Te Kiefte BJC, Wessels R, Kooi EMW, Bos AF, Harmsen HJM, de Goffau MC.

Clin Infect Dis. 2016 Apr 1;62(7):863-870. doi: 10.1093/cid/ciw016. Epub 2016 Jan 19.


Faecalibacterium prausnitzii A2-165 has a high capacity to induce IL-10 in human and murine dendritic cells and modulates T cell responses.

Rossi O, van Berkel LA, Chain F, Tanweer Khan M, Taverne N, Sokol H, Duncan SH, Flint HJ, Harmsen HJ, Langella P, Samsom JN, Wells JM.

Sci Rep. 2016 Jan 4;6:18507. doi: 10.1038/srep18507.


A simple coculture system shows mutualism between anaerobic faecalibacteria and epithelial Caco-2 cells.

Sadaghian Sadabad M, von Martels JZ, Khan MT, Blokzijl T, Paglia G, Dijkstra G, Harmsen HJ, Faber KN.

Sci Rep. 2015 Dec 15;5:17906. doi: 10.1038/srep17906.


Proton pump inhibitors affect the gut microbiome.

Imhann F, Bonder MJ, Vich Vila A, Fu J, Mujagic Z, Vork L, Tigchelaar EF, Jankipersadsing SA, Cenit MC, Harmsen HJ, Dijkstra G, Franke L, Xavier RJ, Jonkers D, Wijmenga C, Weersma RK, Zhernakova A.

Gut. 2016 May;65(5):740-8. doi: 10.1136/gutjnl-2015-310376. Epub 2015 Dec 9.


Intestinal microbiota and anastomotic leakage of stapled colorectal anastomoses: a pilot study.

van Praagh JB, de Goffau MC, Bakker IS, Harmsen HJ, Olinga P, Havenga K.

Surg Endosc. 2016 Jun;30(6):2259-65. doi: 10.1007/s00464-015-4508-z. Epub 2015 Sep 18.


Faecalibacterium prausnitzii Strain HTF-F and Its Extracellular Polymeric Matrix Attenuate Clinical Parameters in DSS-Induced Colitis.

Rossi O, Khan MT, Schwarzer M, Hudcovic T, Srutkova D, Duncan SH, Stolte EH, Kozakova H, Flint HJ, Samsom JN, Harmsen HJ, Wells JM.

PLoS One. 2015 Apr 24;10(4):e0123013. doi: 10.1371/journal.pone.0123013. eCollection 2015.


High level of fecal calprotectin at age 2 months as a marker of intestinal inflammation predicts atopic dermatitis and asthma by age 6.

Orivuori L, Mustonen K, de Goffau MC, Hakala S, Paasela M, Roduit C, Dalphin JC, Genuneit J, Lauener R, Riedler J, Weber J, von Mutius E, Pekkanen J, Harmsen HJM, Vaarala O; PASTURE Study Group.

Clin Exp Allergy. 2015 May;45(5):928-939. doi: 10.1111/cea.12522.


Biofilm formation on the Provox ActiValve: Composition and ingrowth analyzed by Illumina paired-end RNA sequencing, fluorescence in situ hybridization, and confocal laser scanning microscopy.

Timmermans AJ, Harmsen HJ, Bus-Spoor C, Buijssen KJ, van As-Brooks C, de Goffau MC, Tonk RH, van den Brekel MW, Hilgers FJ, van der Laan BF.

Head Neck. 2016 Apr;38 Suppl 1:E432-40. doi: 10.1002/hed.24014. Epub 2015 Jul 14.


Substantial decreases in the number and diversity of microbiota during chemotherapy-induced gastrointestinal mucositis in a rat model.

Fijlstra M, Ferdous M, Koning AM, Rings EH, Harmsen HJ, Tissing WJ.

Support Care Cancer. 2015 Jun;23(6):1513-22. doi: 10.1007/s00520-014-2487-6. Epub 2014 Nov 8.


The ATG16L1-T300A allele impairs clearance of pathosymbionts in the inflamed ileal mucosa of Crohn's disease patients.

Sadaghian Sadabad M, Regeling A, de Goffau MC, Blokzijl T, Weersma RK, Penders J, Faber KN, Harmsen HJ, Dijkstra G.

Gut. 2015 Oct;64(10):1546-52. doi: 10.1136/gutjnl-2014-307289. Epub 2014 Sep 24.


Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.

Heinken A, Khan MT, Paglia G, Rodionov DA, Harmsen HJ, Thiele I.

J Bacteriol. 2014 Sep;196(18):3289-302. doi: 10.1128/JB.01780-14. Epub 2014 Jul 7.


Aberrant gut microbiota composition at the onset of type 1 diabetes in young children.

de Goffau MC, Fuentes S, van den Bogert B, Honkanen H, de Vos WM, Welling GW, Hyöty H, Harmsen HJ.

Diabetologia. 2014 Aug;57(8):1569-77. doi: 10.1007/s00125-014-3274-0. Epub 2014 Jun 15.


The HMI™ module: a new tool to study the Host-Microbiota Interaction in the human gastrointestinal tract in vitro.

Marzorati M, Vanhoecke B, De Ryck T, Sadaghian Sadabad M, Pinheiro I, Possemiers S, Van den Abbeele P, Derycke L, Bracke M, Pieters J, Hennebel T, Harmsen HJ, Verstraete W, Van de Wiele T.

BMC Microbiol. 2014 May 22;14:133. doi: 10.1186/1471-2180-14-133.


Antioxidants keep the potentially probiotic but highly oxygen-sensitive human gut bacterium Faecalibacterium prausnitzii alive at ambient air.

Khan MT, van Dijl JM, Harmsen HJ.

PLoS One. 2014 May 5;9(5):e96097. doi: 10.1371/journal.pone.0096097. eCollection 2014.


Oral cavity anaerobic pathogens in biofilm formation on voice prostheses.

Bertl K, Zijnge V, Zatorska B, Leonhard M, Schneider-Stickler B, Harmsen HJ.

Head Neck. 2015 Apr;37(4):524-9. doi: 10.1002/hed.23625. Epub 2014 Apr 9.


Porphyromonas Gingivalis and E-coli induce different cytokine production patterns in pregnant women.

Faas MM, Kunnen A, Dekker DC, Harmsen HJ, Aarnoudse JG, Abbas F, De Vos P, Van Pampus MG.

PLoS One. 2014 Jan 22;9(1):e86355. doi: 10.1371/journal.pone.0086355. eCollection 2014.


Real-time in vivo imaging of invasive- and biomaterial-associated bacterial infections using fluorescently labelled vancomycin.

van Oosten M, Schäfer T, Gazendam JA, Ohlsen K, Tsompanidou E, de Goffau MC, Harmsen HJ, Crane LM, Lim E, Francis KP, Cheung L, Olive M, Ntziachristos V, van Dijl JM, van Dam GM.

Nat Commun. 2013;4:2584. doi: 10.1038/ncomms3584.


Topography of distinct Staphylococcus aureus types in chronic wounds of patients with epidermolysis bullosa.

van der Kooi-Pol MM, Sadaghian Sadabad M, Duipmans JC, Sabat AJ, Stobernack T, Omansen TF, Westerhout-Pluister GN, Jonkman MF, Harmsen HJ, van Dijl JM.

PLoS One. 2013 Jun 25;8(6):e67272. doi: 10.1371/journal.pone.0067272. Print 2013.


Fecal microbiota composition differs between children with β-cell autoimmunity and those without.

de Goffau MC, Luopajärvi K, Knip M, Ilonen J, Ruohtula T, Härkönen T, Orivuori L, Hakala S, Welling GW, Harmsen HJ, Vaarala O.

Diabetes. 2013 Apr;62(4):1238-44. doi: 10.2337/db12-0526. Epub 2012 Dec 28.


Cytokine production induced by non-encapsulated and encapsulated Porphyromonas gingivalis strains.

Kunnen A, Dekker DC, van Pampus MG, Harmsen HJ, Aarnoudse JG, Abbas F, Faas MM.

Arch Oral Biol. 2012 Nov;57(11):1558-66. doi: 10.1016/j.archoralbio.2012.07.013. Epub 2012 Aug 17.


Shifts in the microbial population in relation to in situ caries progression.

Thomas RZ, Zijnge V, Ciçek A, de Soet JJ, Harmsen HJ, Huysmans MC.

Caries Res. 2012;46(5):427-31. doi: 10.1159/000339482. Epub 2012 Jun 27.


How can Faecalibacterium prausnitzii employ riboflavin for extracellular electron transfer?

Khan MT, Browne WR, van Dijl JM, Harmsen HJ.

Antioxid Redox Signal. 2012 Nov 15;17(10):1433-40. doi: 10.1089/ars.2012.4701. Epub 2012 Jun 25.


The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases.

Khan MT, Duncan SH, Stams AJ, van Dijl JM, Flint HJ, Harmsen HJ.

ISME J. 2012 Aug;6(8):1578-85. doi: 10.1038/ismej.2012.5. Epub 2012 Feb 23.


Crohn's disease patients have more IgG-binding fecal bacteria than controls.

Harmsen HJ, Pouwels SD, Funke A, Bos NA, Dijkstra G.

Clin Vaccine Immunol. 2012 Apr;19(4):515-21. doi: 10.1128/CVI.05517-11. Epub 2012 Feb 15.


Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids, and host-derived substrates for growth.

Lopez-Siles M, Khan TM, Duncan SH, Harmsen HJ, Garcia-Gil LJ, Flint HJ.

Appl Environ Microbiol. 2012 Jan;78(2):420-8. doi: 10.1128/AEM.06858-11. Epub 2011 Nov 18.


Cold spots in neonatal incubators are hot spots for microbial contamination.

de Goffau MC, Bergman KA, de Vries HJ, Meessen NE, Degener JE, van Dijl JM, Harmsen HJ.

Appl Environ Microbiol. 2011 Dec;77(24):8568-72. doi: 10.1128/AEM.06015-11. Epub 2011 Oct 14.

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