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Items: 45

1.

Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Fresno Isolate Recovered from a Bovine Lymph Node.

Haley BJ, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Kim SW, Van Kessel JAS, Harhay DM.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01338-18. doi: 10.1128/MRA.01338-18. eCollection 2019 Jan.

2.

Complete Closed Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Dublin Strains Isolated from Cattle at Harvest.

Harhay DM, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Haley BJ, Kim SW, Van Kessel JAS.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01334-18. doi: 10.1128/MRA.01334-18. eCollection 2018 Nov.

3.

Closed Genome Sequences and Antibiograms of 16 Pasteurella multocida Isolates from Bovine Respiratory Disease Complex Cases and Apparently Healthy Controls.

Harhay GP, Harhay DM, Bono JL, Smith TPL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e00976-18. doi: 10.1128/MRA.00976-18. eCollection 2018 Sep.

4.

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.

Nguyen SV, Harhay DM, Bono JL, Smith TPL, Fields PI, Dinsmore BA, Santovenia M, Wang R, Bosilevac JM, Harhay GP.

Microb Genom. 2018 Aug;4(8). doi: 10.1099/mgen.0.000202. Epub 2018 Jul 27.

5.

Closed Genome Sequences of Seven Histophilus somni Isolates from Beef Calves with Bovine Respiratory Disease Complex.

Harhay GP, Harhay DM, Bono JL, Smith TPL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL.

Genome Announc. 2017 Oct 5;5(40). pii: e01099-17. doi: 10.1128/genomeA.01099-17.

6.

Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms.

Nguyen SV, Harhay GP, Bono JL, Smith TP, Harhay DM.

mSystems. 2017 Feb 28;2(1). pii: e00190-16. doi: 10.1128/mSystems.00190-16. eCollection 2017 Jan-Feb.

7.

Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease.

Capik SF, White BJ, Lubbers BV, Apley MD, DeDonder KD, Larson RL, Harhay GP, Chitko-McKown CG, Harhay DM, Kalbfleisch TS, Schuller G, Clawson ML.

Am J Vet Res. 2017 Mar;78(3):350-358. doi: 10.2460/ajvr.78.3.350.

PMID:
28240958
8.

Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.

Clawson ML, Murray RW, Sweeney MT, Apley MD, DeDonder KD, Capik SF, Larson RL, Lubbers BV, White BJ, Kalbfleisch TS, Schuller G, Dickey AM, Harhay GP, Heaton MP, Chitko-McKown CG, Brichta-Harhay DM, Bono JL, Smith TP.

BMC Genomics. 2016 Nov 29;17(1):982.

9.

Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources.

Nguyen SV, Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Bosilevac JM, Harhay GP.

Genome Announc. 2016 Nov 3;4(6). pii: e01212-16. doi: 10.1128/genomeA.01212-16.

10.

Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.

Anton BP, Harhay GP, Smith TP, Blom J, Roberts RJ.

PLoS One. 2016 Aug 24;11(8):e0161499. doi: 10.1371/journal.pone.0161499. eCollection 2016.

11.

Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases.

DeDonder KD, Harhay DM, Apley MD, Lubbers BV, Clawson ML, Schuller G, Harhay GP, White BJ, Larson RL, Capik SF, Riviere JE, Kalbfleisch T, Tessman RK.

Vet Microbiol. 2016 Aug 30;192:186-193. doi: 10.1016/j.vetmic.2016.07.021. Epub 2016 Jul 26.

PMID:
27527782
12.

Resolving Bovine viral diarrhea virus subtypes from persistently infected U.S. beef calves with complete genome sequence.

Workman AM, Heaton MP, Harhay GP, Smith TP, Grotelueschen DM, Sjeklocha D, Brodersen B, Petersen JL, Chitko-McKown CG.

J Vet Diagn Invest. 2016 Sep;28(5):519-28. doi: 10.1177/1040638716654943. Epub 2016 Jul 7.

13.

Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.

Nguyen SV, Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Bosilevac JM, Harhay GP.

Genome Announc. 2016 Jun 2;4(3). pii: e00447-16. doi: 10.1128/genomeA.00447-16.

14.

Complete Closed Genome Sequences of Salmonella enterica subsp. enterica Serotypes Anatum, Montevideo, Typhimurium, and Newport, Isolated from Beef, Cattle, and Humans.

Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Harhay GP.

Genome Announc. 2016 Feb 4;4(1). pii: e01683-15. doi: 10.1128/genomeA.01683-15.

15.

Full-length coding sequences for 12 bovine viral diarrhea virus isolates from persistently infected cattle in a feedyard in kansas.

Workman AM, Harhay GP, Heaton MP, Grotelueschen DM, Sjeklocha D, Smith TP.

Genome Announc. 2015 May 21;3(3). pii: e00487-15. doi: 10.1128/genomeA.00487-15.

16.

Complete Closed Genome Sequences of a Mannheimia haemolytica Serotype A1 Leukotoxin Deletion Mutant and Its Wild-Type Parent Strain.

Heaton MP, Harhay GP, Smith TP, Bono JL, Chitko-McKown CG.

Genome Announc. 2015 May 7;3(3). pii: e00417-15. doi: 10.1128/genomeA.00417-15.

17.

Evolutionary characterization of pig interferon-inducible transmembrane gene family and member expression dynamics in tracheobronchial lymph nodes of pigs infected with swine respiratory disease viruses.

Miller LC, Jiang Z, Sang Y, Harhay GP, Lager KM.

Vet Immunol Immunopathol. 2014 Jun 15;159(3-4):180-91. doi: 10.1016/j.vetimm.2014.02.015. Epub 2014 Mar 3.

18.

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.

Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00088-14. doi: 10.1128/genomeA.00088-14.

19.

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00084-14. doi: 10.1128/genomeA.00084-14.

20.

Reducing assembly complexity of microbial genomes with single-molecule sequencing.

Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM.

Genome Biol. 2013;14(9):R101.

21.

Effects of TMEM154 haplotypes 1 and 3 on susceptibility to ovine progressive pneumonia virus following natural exposure in sheep.

Leymaster KA, Chitko-McKown CG, Clawson ML, Harhay GP, Heaton MP.

J Anim Sci. 2013 Nov;91(11):5114-21. doi: 10.2527/jas.2013-6663. Epub 2013 Aug 29.

PMID:
23989875
22.

Small ruminant lentivirus genetic subgroups associate with sheep TMEM154 genotypes.

Sider LH, Heaton MP, Chitko-McKown CG, Harhay GP, Smith TP, Leymaster KA, Laegreid WW, Clawson ML.

Vet Res. 2013 Jul 29;44:64. doi: 10.1186/1297-9716-44-64.

23.

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle.

Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2013 May 16;1(3). pii: e00188-13. doi: 10.1128/genomeA.00188-13.

24.

Reactomes of porcine alveolar macrophages infected with porcine reproductive and respiratory syndrome virus.

Jiang Z, Zhou X, Michal JJ, Wu XL, Zhang L, Zhang M, Ding B, Liu B, Manoranjan VS, Neill JD, Harhay GP, Kehrli ME Jr, Miller LC.

PLoS One. 2013;8(3):e59229. doi: 10.1371/journal.pone.0059229. Epub 2013 Mar 19.

25.

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

Heaton MP, Kalbfleisch TS, Petrik DT, Simpson B, Kijas JW, Clawson ML, Chitko-McKown CG, Harhay GP, Leymaster KA; International Sheep Genomics Consortium.

PLoS One. 2013;8(2):e55490. doi: 10.1371/journal.pone.0055490. Epub 2013 Feb 11.

26.

Next-generation sequencing of the porcine skeletal muscle transcriptome for computational prediction of microRNA gene targets.

McDaneld TG, Smith TP, Harhay GP, Wiedmann RT.

PLoS One. 2012;7(7):e42039. doi: 10.1371/journal.pone.0042039. Epub 2012 Jul 27.

27.

Comparison of bacterial communities in faeces of beef cattle fed diets containing corn and wet distillers' grain with solubles.

Durso LM, Wells JE, Harhay GP, Rice WC, Kuehn L, Bono JL, Shackelford S, Wheeler T, Smith TP.

Lett Appl Microbiol. 2012 Aug;55(2):109-14. doi: 10.1111/j.1472-765X.2012.03265.x. Epub 2012 Jun 13.

28.

Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans.

Bono JL, Smith TP, Keen JE, Harhay GP, McDaneld TG, Mandrell RE, Jung WK, Besser TE, Gerner-Smidt P, Bielaszewska M, Karch H, Clawson ML.

Mol Biol Evol. 2012 Aug;29(8):2047-62. doi: 10.1093/molbev/mss072. Epub 2012 Feb 21.

29.

Reduced lentivirus susceptibility in sheep with TMEM154 mutations.

Heaton MP, Clawson ML, Chitko-Mckown CG, Leymaster KA, Smith TP, Harhay GP, White SN, Herrmann-Hoesing LM, Mousel MR, Lewis GS, Kalbfleisch TS, Keen JE, Laegreid WW.

PLoS Genet. 2012 Jan;8(1):e1002467. doi: 10.1371/journal.pgen.1002467. Epub 2012 Jan 26.

30.

Bacterial community analysis of beef cattle feedlots reveals that pen surface is distinct from feces.

Durso LM, Harhay GP, Smith TP, Bono JL, DeSantis TZ, Clawson ML.

Foodborne Pathog Dis. 2011 May;8(5):647-9. doi: 10.1089/fpd.2010.0774. Epub 2011 Jan 9.

PMID:
21214381
31.

Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach.

Durso LM, Harhay GP, Bono JL, Smith TP.

J Microbiol Methods. 2011 Feb;84(2):278-82. doi: 10.1016/j.mimet.2010.12.008. Epub 2010 Dec 16.

PMID:
21167876
32.

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation.

Harhay GP, Smith TP, Alexander LJ, Haudenschild CD, Keele JW, Matukumalli LK, Schroeder SG, Van Tassell CP, Gresham CR, Bridges SM, Burgess SC, Sonstegard TS.

Genome Biol. 2010;11(10):R102. doi: 10.1186/gb-2010-11-10-r102. Epub 2010 Oct 20.

33.

Animal-to-animal variation in fecal microbial diversity among beef cattle.

Durso LM, Harhay GP, Smith TP, Bono JL, Desantis TZ, Harhay DM, Andersen GL, Keen JE, Laegreid WW, Clawson ML.

Appl Environ Microbiol. 2010 Jul;76(14):4858-62. doi: 10.1128/AEM.00207-10. Epub 2010 May 14.

34.

In-depth global analysis of transcript abundance levels in porcine alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus.

Miller LC, Neill JD, Harhay GP, Lager KM, Laegreid WW, Kehrli ME Jr.

Adv Virol. 2010;2010:864181. doi: 10.1155/2010/864181. Epub 2011 Jan 12.

35.

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL Jr, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, Moré DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH Jr, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ.

Science. 2009 Apr 24;324(5926):522-8. doi: 10.1126/science.1169588.

36.

Effect of porcine reproductive and respiratory syndrome virus on porcine alveolar macrophage function as determined using serial analysis of gene expression (SAGE).

Miller LC, Harhay GP, Lager KM, Smith TPL, Neill JD.

Dev Biol (Basel). 2008;132:169-174. doi: 10.1159/000317157.

PMID:
18817299
37.

A sequencing strategy for identifying variation throughout the prion gene of BSE-affected cattle.

Clawson ML, Heaton MP, Keele JW, Smith TP, Harhay GP, Richt JA, Laegreid WW.

BMC Res Notes. 2008 Jun 23;1:32. doi: 10.1186/1756-0500-1-32.

38.

Prevalence of the prion protein gene E211K variant in U.S. cattle.

Heaton MP, Keele JW, Harhay GP, Richt JA, Koohmaraie M, Wheeler TL, Shackelford SD, Casas E, King DA, Sonstegard TS, Van Tassell CP, Neibergs HL, Chase CC Jr, Kalbfleisch TS, Smith TP, Clawson ML, Laegreid WW.

BMC Vet Res. 2008 Jul 14;4:25. doi: 10.1186/1746-6148-4-25.

39.

Prion gene haplotypes of U.S. cattle.

Clawson ML, Heaton MP, Keele JW, Smith TP, Harhay GP, Laegreid WW.

BMC Genet. 2006 Nov 8;7:51.

40.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

41.

Linkage mapping bovine EST-based SNP.

Snelling WM, Casas E, Stone RT, Keele JW, Harhay GP, Bennett GL, Smith TP.

BMC Genomics. 2005 May 19;6:74.

42.

Use of bovine single nucleotide polymorphism markers to verify sample tracking in beef processing.

Heaton MP, Keen JE, Clawson ML, Harhay GP, Bauer N, Shultz C, Green BT, Durso L, Chitko-McKown CG, Laegreid WW.

J Am Vet Med Assoc. 2005 Apr 15;226(8):1311-4.

PMID:
15844419
43.

Integrating linkage and radiation hybrid mapping data for bovine chromosome 15.

Snelling WM, Gautier M, Keele JW, Smith TP, Stone RT, Harhay GP, Bennett GL, Ihara N, Takasuga A, Takeda H, Sugimoto Y, Eggen A.

BMC Genomics. 2004 Oct 8;5:77.

44.

Positional candidate gene selection from livestock EST databases using Gene Ontology.

Harhay GP, Keele JW.

Bioinformatics. 2003 Jan 22;19(2):249-55.

PMID:
12538246
45.

Selection and use of SNP markers for animal identification and paternity analysis in U.S. beef cattle.

Heaton MP, Harhay GP, Bennett GL, Stone RT, Grosse WM, Casas E, Keele JW, Smith TP, Chitko-McKown CG, Laegreid WW.

Mamm Genome. 2002 May;13(5):272-81.

PMID:
12016516

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