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Items: 25

1.

Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Fresno Isolate Recovered from a Bovine Lymph Node.

Haley BJ, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Kim SW, Van Kessel JAS, Harhay DM.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01338-18. doi: 10.1128/MRA.01338-18. eCollection 2019 Jan.

2.

Complete Closed Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Dublin Strains Isolated from Cattle at Harvest.

Harhay DM, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Haley BJ, Kim SW, Van Kessel JAS.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01334-18. doi: 10.1128/MRA.01334-18. eCollection 2018 Nov.

3.

Closed Genome Sequences and Antibiograms of 16 Pasteurella multocida Isolates from Bovine Respiratory Disease Complex Cases and Apparently Healthy Controls.

Harhay GP, Harhay DM, Bono JL, Smith TPL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e00976-18. doi: 10.1128/MRA.00976-18. eCollection 2018 Sep.

4.

Whole-Genome Sequence Analysis of CTX-M Containing Escherichia coli Isolates from Retail Meats and Cattle in the United States.

Tadesse DA, Li C, Mukherjee S, Hsu CH, Bodeis Jones S, Gaines SA, Kabera C, Loneragan GH, Torrence M, Harhay DM, McDermott PF, Zhao S.

Microb Drug Resist. 2018 Sep;24(7):939-948. doi: 10.1089/mdr.2018.0206. Epub 2018 Aug 27.

5.

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.

Nguyen SV, Harhay DM, Bono JL, Smith TPL, Fields PI, Dinsmore BA, Santovenia M, Wang R, Bosilevac JM, Harhay GP.

Microb Genom. 2018 Aug;4(8). doi: 10.1099/mgen.0.000202. Epub 2018 Jul 27.

6.

Biofilm Formation, Antimicrobial Resistance, and Sanitizer Tolerance of Salmonella enterica Strains Isolated from Beef Trim.

Wang R, Schmidt JW, Harhay DM, Bosilevac JM, King DA, Arthur TM.

Foodborne Pathog Dis. 2017 Dec;14(12):687-695. doi: 10.1089/fpd.2017.2319. Epub 2017 Oct 16.

PMID:
29035101
7.

Closed Genome Sequences of Seven Histophilus somni Isolates from Beef Calves with Bovine Respiratory Disease Complex.

Harhay GP, Harhay DM, Bono JL, Smith TPL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL.

Genome Announc. 2017 Oct 5;5(40). pii: e01099-17. doi: 10.1128/genomeA.01099-17.

8.

Transferability of antimicrobial resistance from multidrug-resistant Escherichia coli isolated from cattle in the USA to E. coli and Salmonella Newport recipients.

Poole TL, Callaway TR, Norman KN, Scott HM, Loneragan GH, Ison SA, Beier RC, Harhay DM, Norby B, Nisbet DJ.

J Glob Antimicrob Resist. 2017 Dec;11:123-132. doi: 10.1016/j.jgar.2017.08.001. Epub 2017 Aug 8.

PMID:
28801276
9.

Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms.

Nguyen SV, Harhay GP, Bono JL, Smith TP, Harhay DM.

mSystems. 2017 Feb 28;2(1). pii: e00190-16. doi: 10.1128/mSystems.00190-16. eCollection 2017 Jan-Feb.

10.

Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease.

Capik SF, White BJ, Lubbers BV, Apley MD, DeDonder KD, Larson RL, Harhay GP, Chitko-McKown CG, Harhay DM, Kalbfleisch TS, Schuller G, Clawson ML.

Am J Vet Res. 2017 Mar;78(3):350-358. doi: 10.2460/ajvr.78.3.350.

PMID:
28240958
11.

Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources.

Nguyen SV, Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Bosilevac JM, Harhay GP.

Genome Announc. 2016 Nov 3;4(6). pii: e01212-16. doi: 10.1128/genomeA.01212-16.

12.

Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases.

DeDonder KD, Harhay DM, Apley MD, Lubbers BV, Clawson ML, Schuller G, Harhay GP, White BJ, Larson RL, Capik SF, Riviere JE, Kalbfleisch T, Tessman RK.

Vet Microbiol. 2016 Aug 30;192:186-193. doi: 10.1016/j.vetmic.2016.07.021. Epub 2016 Jul 26.

PMID:
27527782
13.

Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.

Nguyen SV, Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Bosilevac JM, Harhay GP.

Genome Announc. 2016 Jun 2;4(3). pii: e00447-16. doi: 10.1128/genomeA.00447-16.

14.

Effect of Direct-Fed Microbial Dosage on the Fecal Concentrations of Enterohemorrhagic Escherichia coli in Feedlot Cattle.

Luedtke BE, Bosilevac JM, Harhay DM, Arthur TM.

Foodborne Pathog Dis. 2016 Apr;13(4):190-5. doi: 10.1089/fpd.2015.2063. Epub 2016 Mar 14.

PMID:
26974651
15.

Complete Closed Genome Sequences of Salmonella enterica subsp. enterica Serotypes Anatum, Montevideo, Typhimurium, and Newport, Isolated from Beef, Cattle, and Humans.

Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Harhay GP.

Genome Announc. 2016 Feb 4;4(1). pii: e01683-15. doi: 10.1128/genomeA.01683-15.

16.

Pharmacokinetics and pharmacodynamics of gamithromycin in pulmonary epithelial lining fluid in naturally occurring bovine respiratory disease in multisource commingled feedlot cattle.

DeDonder KD, Apley MD, Li M, Gehring R, Harhay DM, Lubbers BV, White BJ, Capik SF, KuKanich B, Riviere JE, Tessman RK.

J Vet Pharmacol Ther. 2016 Apr;39(2):157-66. doi: 10.1111/jvp.12267. Epub 2015 Oct 6.

PMID:
26441021
17.

Antimicrobial-Resistant Bacterial Populations and Antimicrobial Resistance Genes Obtained from Environments Impacted by Livestock and Municipal Waste.

Agga GE, Arthur TM, Durso LM, Harhay DM, Schmidt JW.

PLoS One. 2015 Jul 21;10(7):e0132586. doi: 10.1371/journal.pone.0132586. eCollection 2015.

18.

WGS accurately predicts antimicrobial resistance in Escherichia coli.

Tyson GH, McDermott PF, Li C, Chen Y, Tadesse DA, Mukherjee S, Bodeis-Jones S, Kabera C, Gaines SA, Loneragan GH, Edrington TS, Torrence M, Harhay DM, Zhao S.

J Antimicrob Chemother. 2015 Oct;70(10):2763-9. doi: 10.1093/jac/dkv186. Epub 2015 Jul 3.

PMID:
26142410
19.

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.

Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00088-14. doi: 10.1128/genomeA.00088-14.

20.

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00084-14. doi: 10.1128/genomeA.00084-14.

21.

Reducing assembly complexity of microbial genomes with single-molecule sequencing.

Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM.

Genome Biol. 2013;14(9):R101.

22.
23.

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle.

Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2013 May 16;1(3). pii: e00188-13. doi: 10.1128/genomeA.00188-13.

24.

Biofilm formation by Shiga toxin-producing Escherichia coli O157:H7 and Non-O157 strains and their tolerance to sanitizers commonly used in the food processing environment.

Wang R, Bono JL, Kalchayanand N, Shackelford S, Harhay DM.

J Food Prot. 2012 Aug;75(8):1418-28. doi: 10.4315/0362-028X.JFP-11-427.

PMID:
22856565
25.

Animal-to-animal variation in fecal microbial diversity among beef cattle.

Durso LM, Harhay GP, Smith TP, Bono JL, Desantis TZ, Harhay DM, Andersen GL, Keen JE, Laegreid WW, Clawson ML.

Appl Environ Microbiol. 2010 Jul;76(14):4858-62. doi: 10.1128/AEM.00207-10. Epub 2010 May 14.

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