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Items: 11

1.

A "Starry-Sky" Chest X-Ray.

Lindner A, Härer J, Stocker H.

Dtsch Arztebl Int. 2018 Apr 20;115(16):286. doi: 10.3238/arztebl.2018.0286b. No abstract available.

2.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

3.

Predicting local field potentials with recurrent neural networks.

Kim L, Harer J, Rangamani A, Moran J, Parks PD, Widge A, Eskandar E, Dougherty D, Chin SP.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:808-811. doi: 10.1109/EMBC.2016.7590824.

PMID:
28268448
4.

The Local Edge Machine: inference of dynamic models of gene regulation.

McGoff KA, Guo X, Deckard A, Kelliher CM, Leman AR, Francey LJ, Hogenesch JB, Haase SB, Harer JL.

Genome Biol. 2016 Oct 19;17(1):214.

5.

SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.

Perea JA, Deckard A, Haase SB, Harer J.

BMC Bioinformatics. 2015 Aug 16;16:257. doi: 10.1186/s12859-015-0645-6.

6.

Easily repairable networks: reconnecting nodes after damage.

Farr RS, Harer JL, Fink TM.

Phys Rev Lett. 2014 Sep 26;113(13):138701. Epub 2014 Sep 26.

PMID:
25302922
7.

Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.

Bristow SL, Leman AR, Simmons Kovacs LA, Deckard A, Harer J, Haase SB.

Genome Biol. 2014 Sep 5;15(9):446. doi: 10.1186/s13059-014-0446-7.

8.

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.

Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J.

Bioinformatics. 2013 Dec 15;29(24):3174-80. doi: 10.1093/bioinformatics/btt541. Epub 2013 Sep 20.

9.

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.

Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, Benfey PN.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):E1695-704. doi: 10.1073/pnas.1304354110. Epub 2013 Apr 11.

10.

GiA Roots: software for the high throughput analysis of plant root system architecture.

Galkovskyi T, Mileyko Y, Bucksch A, Moore B, Symonova O, Price CA, Topp CN, Iyer-Pascuzzi AS, Zurek PR, Fang S, Harer J, Benfey PN, Weitz JS.

BMC Plant Biol. 2012 Jul 26;12:116. doi: 10.1186/1471-2229-12-116.

11.

Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems.

Iyer-Pascuzzi AS, Symonova O, Mileyko Y, Hao Y, Belcher H, Harer J, Weitz JS, Benfey PN.

Plant Physiol. 2010 Mar;152(3):1148-57. doi: 10.1104/pp.109.150748. Epub 2010 Jan 27.

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