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Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.

Racle J, Michaux J, Rockinger GA, Arnaud M, Bobisse S, Chong C, Guillaume P, Coukos G, Harari A, Jandus C, Bassani-Sternberg M, Gfeller D.

Nat Biotechnol. 2019 Nov;37(11):1283-1286. doi: 10.1038/s41587-019-0289-6. Epub 2019 Oct 14.


Adenosine mediates functional and metabolic suppression of peripheral and tumor-infiltrating CD8+ T cells.

Mastelic-Gavillet B, Navarro Rodrigo B, Décombaz L, Wang H, Ercolano G, Ahmed R, Lozano LE, Ianaro A, Derré L, Valerio M, Tawadros T, Jichlinski P, Nguyen-Ngoc T, Speiser DE, Verdeil G, Gestermann N, Dormond O, Kandalaft L, Coukos G, Jandus C, Ménétrier-Caux C, Caux C, Ho PC, Romero P, Harari A, Vigano S.

J Immunother Cancer. 2019 Oct 10;7(1):257. doi: 10.1186/s40425-019-0719-5.


Three Patients with Lithium-Associated Hyperparathyroidism: Literature Review Regarding Medical and Surgical Management.

Hanna RM, Hasnain H, Sangalang MD, Han J, Arasu A, Arman F, Barsoum M, Poa H, Rastogi A, Harari A.

Case Rep Nephrol Dial. 2019 Aug 20;9(2):108-118. doi: 10.1159/000502399. eCollection 2019 May-Aug.


Obesity and Insulin Resistance Are Inversely Associated with Serum and Adipose Tissue Carotenoid Concentrations in Adults.

Harari A, Coster AC, Jenkins A, Xu A, Greenfield JR, Harats D, Shaish A, Samocha-Bonet D.

J Nutr. 2019 Aug 28. pii: nxz184. doi: 10.1093/jn/nxz184. [Epub ahead of print]


A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma-A Proof of Antigen Discovery Feasibility in Three Patients.

Bassani-Sternberg M, Digklia A, Huber F, Wagner D, Sempoux C, Stevenson BJ, Thierry AC, Michaux J, Pak H, Racle J, Boudousquie C, Balint K, Coukos G, Gfeller D, Martin Lluesma S, Harari A, Demartines N, Kandalaft LE.

Front Immunol. 2019 Aug 8;10:1832. doi: 10.3389/fimmu.2019.01832. eCollection 2019.


Pheromone gland transcriptome of the pink bollworm moth, Pectinophora gossypiella: Comparison between a laboratory and field population.

Dou X, Liu S, Soroker V, Harari A, Jurenka R.

PLoS One. 2019 Jul 22;14(7):e0220187. doi: 10.1371/journal.pone.0220187. eCollection 2019.


High-throughput Screening of Human Tumor Antigen-specific CD4 T Cells, Including Neoantigen-reactive T Cells.

Costa-Nunes C, Cachot A, Bobisse S, Arnaud M, Genolet R, Baumgaertner P, Speiser DE, Sousa Alves PM, Sandoval F, Adotévi O, Reith W, Protti MP, Coukos G, Harari A, Romero P, Jandus C.

Clin Cancer Res. 2019 Jul 15;25(14):4320-4331. doi: 10.1158/1078-0432.CCR-18-1356. Epub 2019 Apr 23.


Tumor-associated factors are enriched in lymphatic exudate compared to plasma in metastatic melanoma patients.

Broggi MAS, Maillat L, Clement CC, Bordry N, Corthésy P, Auger A, Matter M, Hamelin R, Potin L, Demurtas D, Romano E, Harari A, Speiser DE, Santambrogio L, Swartz MA.

J Exp Med. 2019 May 6;216(5):1091-1107. doi: 10.1084/jem.20181618. Epub 2019 Apr 11.


Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.

Pyke RM, Genolet R, Harari A, Coukos G, Gfeller D, Carter H.

Pac Symp Biocomput. 2019;24:148-159.


50-Gy Stereotactic Body Radiation Therapy to the Dominant Intraprostatic Nodule: Results From a Phase 1a/b Trial.

Herrera FG, Valerio M, Berthold D, Tawadros T, Meuwly JY, Vallet V, Baumgartner P, Thierry AC, De Bari B, Jichlinski P, Kandalaft L, Coukos G, Harari A, Bourhis J.

Int J Radiat Oncol Biol Phys. 2019 Feb 1;103(2):320-334. doi: 10.1016/j.ijrobp.2018.09.023. Epub 2018 Sep 27.


Moth-inspired navigation algorithm in a turbulent odor plume from a pulsating source.

Liberzon A, Harrington K, Daniel N, Gurka R, Harari A, Zilman G.

PLoS One. 2018 Jun 13;13(6):e0198422. doi: 10.1371/journal.pone.0198422. eCollection 2018.


Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer.

Tanyi JL, Bobisse S, Ophir E, Tuyaerts S, Roberti A, Genolet R, Baumgartner P, Stevenson BJ, Iseli C, Dangaj D, Czerniecki B, Semilietof A, Racle J, Michel A, Xenarios I, Chiang C, Monos DS, Torigian DA, Nisenbaum HL, Michielin O, June CH, Levine BL, Powell DJ Jr, Gfeller D, Mick R, Dafni U, Zoete V, Harari A, Coukos G, Kandalaft LE.

Sci Transl Med. 2018 Apr 11;10(436). pii: eaao5931. doi: 10.1126/scitranslmed.aao5931.


Sensitive and frequent identification of high avidity neo-epitope specific CD8 + T cells in immunotherapy-naive ovarian cancer.

Bobisse S, Genolet R, Roberti A, Tanyi JL, Racle J, Stevenson BJ, Iseli C, Michel A, Le Bitoux MA, Guillaume P, Schmidt J, Bianchi V, Dangaj D, Fenwick C, Derré L, Xenarios I, Michielin O, Romero P, Monos DS, Zoete V, Gfeller D, Kandalaft LE, Coukos G, Harari A.

Nat Commun. 2018 Mar 15;9(1):1092. doi: 10.1038/s41467-018-03301-0.


Precopulatory behavior and sexual conflict in the desert locust.

Golov Y, Rillich J, Harari A, Ayali A.

PeerJ. 2018 Feb 28;6:e4356. doi: 10.7717/peerj.4356. eCollection 2018.


Does mating disruption of Planococcus ficus and Lobesia botrana affect the diversity, abundance and composition of natural enemies in Israeli vineyards?

Shapira I, Keasar T, Harari AR, Gavish-Regev E, Kishinevsky M, Steinitz H, Sofer-Arad C, Tomer M, Avraham A, Sharon R.

Pest Manag Sci. 2018 Aug;74(8):1837-1844. doi: 10.1002/ps.4883. Epub 2018 Mar 14.


Dysregulated Innate Lymphocytes in Patients With Primary Antibody Deficiency Treated With Intravenous Immunoglobulin.

Vigano S, Trabanelli S, Indulsi F, Salomé B, Harari A, Romero P, Helbling A, Jandus C, Jandus P.

J Investig Allergol Clin Immunol. 2017;27(6):394-396. doi: 10.18176/jiaci.0200. No abstract available.


Sustained Growth of a University-Based Endocrine Surgery Program Over 10 Years.

Sho S, Singer ES, Kwok E, Hissom R, Harari A, Livhits MJ, Yeh MW.

Ann Surg Oncol. 2017 Oct;24(11):3306-3311. doi: 10.1245/s10434-017-6012-2. Epub 2017 Jul 26.


Cancer Vaccines in Ovarian Cancer: How Can We Improve?

Martin Lluesma S, Wolfer A, Harari A, Kandalaft LE.

Biomedicines. 2016 May 3;4(2). pii: E10. doi: 10.3390/biomedicines4020010. Review.


Vitamin D and rheumatoid arthritis: an ongoing mystery.

Bragazzi NL, Watad A, Neumann SG, Simon M, Brown SB, Abu Much A, Harari A, Tiosano S, Amital H, Shoenfeld Y.

Curr Opin Rheumatol. 2017 Jul;29(4):378-388. doi: 10.1097/BOR.0000000000000397. Review.


Mating system, mate choice and parental care in a bark beetle.

Baruch O, Mendel Z, Scharf I, Harari AR.

Bull Entomol Res. 2017 Oct;107(5):611-619. doi: 10.1017/S0007485317000311. Epub 2017 Apr 6.


Label-free identification of activated T lymphocytes through tridimensional microsensors on chip.

Rollo E, Tenaglia E, Genolet R, Bianchi E, Harari A, Coukos G, Guiducci C.

Biosens Bioelectron. 2017 Aug 15;94:193-199. doi: 10.1016/j.bios.2017.02.047. Epub 2017 Mar 3.


Adipocyte Browning and Higher Mitochondrial Function in Periadrenal But Not SC Fat in Pheochromocytoma.

Vergnes L, Davies GR, Lin JY, Yeh MW, Livhits MJ, Harari A, Symonds ME, Sacks HS, Reue K.

J Clin Endocrinol Metab. 2016 Nov;101(11):4440-4448. Epub 2016 Aug 30.


The Role of Report Comparison, Analysis, and Discrepancy Categorization in Resident Education.

Harari AA, Conti MB, Bokhari SA, Staib LH, Taylor CR.

AJR Am J Roentgenol. 2016 Dec;207(6):1223-1231. Epub 2016 Sep 22.


Copulation with immature females increases male fitness in cannibalistic widow spiders.

Biaggio MD, Sandomirsky I, Lubin Y, Harari AR, Andrade MC.

Biol Lett. 2016 Sep;12(9). pii: 20160516. doi: 10.1098/rsbl.2016.0516.


Neoantigen-based cancer immunotherapy.

Bobisse S, Foukas PG, Coukos G, Harari A.

Ann Transl Med. 2016 Jul;4(14):262. doi: 10.21037/atm.2016.06.17. Review.


9-cis β-Carotene Increased Cholesterol Efflux to HDL in Macrophages.

Bechor S, Zolberg Relevy N, Harari A, Almog T, Kamari Y, Ben-Amotz A, Harats D, Shaish A.

Nutrients. 2016 Jul 19;8(7). pii: E435. doi: 10.3390/nu8070435.


Lens epithelial cell growth on the anterior optic of 2 hydrophobic intraocular lens models.

Weinberg T, Klein I, Zadok D, Huszar M, Harari A, Ezov N, Kleinmann G.

J Cataract Refract Surg. 2016 Feb;42(2):296-301. doi: 10.1016/j.jcrs.2015.08.020.


Effect of Schistosoma mansoni Infection on Innate and HIV-1-Specific T-Cell Immune Responses in HIV-1-Infected Ugandan Fisher Folk.

Obuku AE, Asiki G, Abaasa A, Ssonko I, Harari A, van Dam GJ, Corstjens PL, Joloba M, Ding S, Mpendo J, Nielsen L, Kamali A, Elliott AM, Pantaleo G, Kaleebu P, Pala P.

AIDS Res Hum Retroviruses. 2016 Jul;32(7):668-75. doi: 10.1089/AID.2015.0274. Epub 2016 Mar 15.


Increased rates of advanced thyroid cancer in California.

Harari A, Singh RK.

J Surg Res. 2016 Mar;201(1):244-52. doi: 10.1016/j.jss.2015.10.037. Epub 2015 Nov 2.


Novel technologies and emerging biomarkers for personalized cancer immunotherapy.

Yuan J, Hegde PS, Clynes R, Foukas PG, Harari A, Kleen TO, Kvistborg P, Maccalli C, Maecker HT, Page DB, Robins H, Song W, Stack EC, Wang E, Whiteside TL, Zhao Y, Zwierzina H, Butterfield LH, Fox BA.

J Immunother Cancer. 2016 Jan 19;4:3. doi: 10.1186/s40425-016-0107-3. eCollection 2016. Review.


Cross-protection of the Bivalent Human Papillomavirus (HPV) Vaccine Against Variants of Genetically Related High-Risk HPV Infections.

Harari A, Chen Z, Rodríguez AC, Hildesheim A, Porras C, Herrero R, Wacholder S, Panagiotou OA, Befano B, Burk RD, Schiffman M; Costa Rica HPV Vaccine Trial Group.

J Infect Dis. 2016 Mar 15;213(6):939-47. doi: 10.1093/infdis/jiv519. Epub 2015 Oct 30.


High-throughput monitoring of human tumor-specific T-cell responses with large peptide pools.

Chevalier MF, Bobisse S, Costa-Nunes C, Cesson V, Jichlinski P, Speiser DE, Harari A, Coukos G, Romero P, Nardelli-Haefliger D, Jandus C, Derré L.

Oncoimmunology. 2015 May 27;4(10):e1029702. eCollection 2015 Oct.


Immune monitoring technology primer: flow and mass cytometry.

Maecker HT, Harari A.

J Immunother Cancer. 2015 Sep 15;3:44. doi: 10.1186/s40425-015-0085-x. eCollection 2015. No abstract available.


Personalized approaches to active immunotherapy in cancer.

Ophir E, Bobisse S, Coukos G, Harari A, Kandalaft LE.

Biochim Biophys Acta. 2016 Jan;1865(1):72-82. doi: 10.1016/j.bbcan.2015.07.004. Epub 2015 Aug 1. Review.


Medical Students' Perceptions of Surgeons: Implications for Teaching and Recruitment.

Braun HJ, Dusch MN, Park SH, O'Sullivan PS, Harari A, Harleman E, Ascher NL.

J Surg Educ. 2015 Nov-Dec;72(6):1195-9. doi: 10.1016/j.jsurg.2015.05.014. Epub 2015 Jul 15.


HPV16 CpG methyl-haplotypes are associated with cervix precancer and cancer in the Guanacaste natural history study.

Frimer M, Sun C, McAndrew T, Smith B, Harari A, Chen Z, Mirabello L, Wentzensen N, Goldberg GL, Rodriguez AC, Schiffman M, Burk RD.

Gynecol Oncol. 2015 Jul;138(1):94-100. doi: 10.1016/j.ygyno.2015.05.001. Epub 2015 May 19.


Parental support and adolescent motivation for dieting: the Self-Determination Theory perspective.

Katz I, Madjar N, Harari A.

J Psychol. 2015;149(5):461-79. doi: 10.1080/00223980.2014.903890. Epub 2014 Apr 21.


Vitamin A-deficient diet accelerated atherogenesis in apolipoprotein E(-/-) mice and dietary β-carotene prevents this consequence.

Relevy NZ, Harats D, Harari A, Ben-Amotz A, Bitzur R, Rühl R, Shaish A.

Biomed Res Int. 2015;2015:758723. doi: 10.1155/2015/758723. Epub 2015 Feb 23.


Dynamic Parathyroid Computed Tomography (4DCT) Facilitates Reoperative Parathyroidectomy and Enables Cure of Missed Hyperplasia.

Cham S, Sepahdari AR, Hall KE, Yeh MW, Harari A.

Ann Surg Oncol. 2015 Oct;22(11):3537-42. doi: 10.1245/s10434-014-4331-0. Epub 2015 Feb 18.


The inhibition of macrophage foam cell formation by 9-cis β-carotene is driven by BCMO1 activity.

Zolberg Relevy N, Bechor S, Harari A, Ben-Amotz A, Kamari Y, Harats D, Shaish A.

PLoS One. 2015 Jan 28;10(1):e0115272. doi: 10.1371/journal.pone.0115272. eCollection 2015.


Interleukin-1- and type I interferon-dependent enhanced immunogenicity of an NYVAC-HIV-1 Env-Gag-Pol-Nef vaccine vector with dual deletions of type I and type II interferon-binding proteins.

Delaloye J, Filali-Mouhim A, Cameron MJ, Haddad EK, Harari A, Goulet JP, Gomez CE, Perdiguero B, Esteban M, Pantaleo G, Roger T, Sékaly RP, Calandra T.

J Virol. 2015 Apr;89(7):3819-32. doi: 10.1128/JVI.03061-14. Epub 2015 Jan 21.


Predictors of Multigland Disease in Primary Hyperparathyroidism: A Scoring System with 4D-CT Imaging and Biochemical Markers.

Sepahdari AR, Bahl M, Harari A, Kim HJ, Yeh MW, Hoang JK.

AJNR Am J Neuroradiol. 2015 May;36(5):987-92. doi: 10.3174/ajnr.A4213. Epub 2015 Jan 2.


L1CAM is expressed in triple-negative breast cancers and is inversely correlated with androgen receptor.

Doberstein K, Milde-Langosch K, Bretz NP, Schirmer U, Harari A, Witzel I, Ben-Arie A, Hubalek M, Müller-Holzner E, Reinold S, Zeimet AG, Altevogt P, Fogel M.

BMC Cancer. 2014 Dec 15;14:958. doi: 10.1186/1471-2407-14-958.


Surgery is associated with improved survival for adrenocortical cancer, even in metastatic disease.

Livhits M, Li N, Yeh MW, Harari A.

Surgery. 2014 Dec;156(6):1531-40; discussion 1540-1. doi: 10.1016/j.surg.2014.08.047. Epub 2014 Nov 11.


Combined use of Mycobacterium tuberculosis-specific CD4 and CD8 T-cell responses is a powerful diagnostic tool of active tuberculosis.

Rozot V, Patrizia A, Vigano S, Mazza-Stalder J, Idrizi E, Day CL, Perreau M, Lazor-Blanchet C, Ohmiti K, Goletti D, Bart PA, Hanekom W, Scriba TJ, Nicod L, Pantaleo G, Harari A.

Clin Infect Dis. 2015 Feb 1;60(3):432-7. doi: 10.1093/cid/ciu795. Epub 2014 Oct 31.


Reproductive outcomes and nononcologic complications after radioactive iodine ablation for well-differentiated thyroid cancer.

Wu JX, Young S, Ro K, Li N, Leung AM, Chiu HK, Harari A, Yeh MW.

Thyroid. 2015 Jan;25(1):133-8. doi: 10.1089/thy.2014.0343.


CD160-associated CD8 T-cell functional impairment is independent of PD-1 expression.

Viganò S, Banga R, Bellanger F, Pellaton C, Farina A, Comte D, Harari A, Perreau M.

PLoS Pathog. 2014 Sep 25;10(9):e1004380. doi: 10.1371/journal.ppat.1004380. eCollection 2014 Sep.


HPV16 methyl-haplotypes determined by a novel next-generation sequencing method are associated with cervical precancer.

Mirabello L, Frimer M, Harari A, McAndrew T, Smith B, Chen Z, Wentzensen N, Wacholder S, Castle PE, Raine-Bennett T, Schiffman M, Burk RD.

Int J Cancer. 2015 Feb 15;136(4):E146-53. doi: 10.1002/ijc.29119. Epub 2014 Sep 3.


Trends in the frequency and quality of parathyroid surgery: analysis of 17,082 cases over 10 years.

Abdulla AG, Ituarte PH, Harari A, Wu JX, Yeh MW.

Ann Surg. 2015 Apr;261(4):746-50. doi: 10.1097/SLA.0000000000000812.


Female detection of the synthetic sex pheromone contributes to the efficacy of mating disruption of the European grapevine moth, Lobesia botrana.

Harari AR, Zahavi T, Steinitz H.

Pest Manag Sci. 2015 Feb;71(2):316-22. doi: 10.1002/ps.3830. Epub 2014 Jun 26.


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