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Superoxide Dismutase and Pseudocatalase Increase Tolerance to Hg(II) in Thermus thermophilus HB27 by Maintaining the Reduced Bacillithiol Pool.

Norambuena J, Hanson TE, Barkay T, Boyd JM.

mBio. 2019 Apr 2;10(2). pii: e00183-19. doi: 10.1128/mBio.00183-19.


Insights Into the Mineralogy and Surface Chemistry of Extracellular Biogenic S0 Globules Produced by Chlorobaculum tepidum.

Marnocha CL, Sabanayagam CR, Modla S, Powell DH, Henri PA, Steele AS, Hanson TE, Webb SM, Chan CS.

Front Microbiol. 2019 Feb 25;10:271. doi: 10.3389/fmicb.2019.00271. eCollection 2019. Erratum in: Front Microbiol. 2019 Sep 24;10:2237.


Estimation of sensitivity and specificity of multiple repeated binary tests without a gold standard.

Wang C, Hanson TE.

Stat Med. 2019 Jun 15;38(13):2381-2390. doi: 10.1002/sim.8114. Epub 2019 Feb 27.


Physiological Studies of Chlorobiaceae Suggest that Bacillithiol Derivatives Are the Most Widespread Thiols in Bacteria.

Hiras J, Sharma SV, Raman V, Tinson RAJ, Arbach M, Rodrigues DF, Norambuena J, Hamilton CJ, Hanson TE.

mBio. 2018 Nov 27;9(6). pii: e01603-18. doi: 10.1128/mBio.01603-18.


Erratum: Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ, Hanson TE, Woyke T, Klotz MG, Hugenholtz P.

Front Microbiol. 2018 Apr 18;9:772. doi: 10.3389/fmicb.2018.00772. eCollection 2018.


Marginal Bayesian Semiparametric Modeling of Mismeasured Multivariate Interval-Censored Data.

Li L, Jara A, García-Zattera MJ, Hanson TE.

J Am Stat Assoc. 2018;114(525):129-145. doi: 10.1080/01621459.2018.1476240. Epub 2018 Oct 26.


Differential RNA Sequencing Implicates Sulfide as the Master Regulator of S0 Metabolism in Chlorobaculum tepidum and Other Green Sulfur Bacteria.

Hilzinger JM, Raman V, Shuman KE, Eddie BJ, Hanson TE.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e01966-17. doi: 10.1128/AEM.01966-17. Print 2018 Feb 1.


Peculiar citric acid cycle of hydrothermal vent chemolithoautotroph Hydrogenovibrio crunogenus, and insights into carbon metabolism by obligate autotrophs.

Quasem I, Achille AN, Caddick BA, Carter TA, Daniels C, Delaney JA, Delic V, Denton KA, Duran MC, Fatica MK, Ference CM, Galkiewicz JP, Garcia AM, Hendrick JD, Horton SA, Kun MS, Koch PW, Lee TM, McCabe CR, McHale S, McDaniel LD, Menning DM, Menning KJ, Mirzaei-Souderjani H, Mostajabian S, Nicholson DA, Nugent CK, Osman NP, Pappas DI, Rocha AM, Rosario K, Rubelmann H, Schwartz JA, Seeley KW, Staley CM, Wallace EM, Wong TM, Zielinski BL, Hanson TE, Scott KM.

FEMS Microbiol Lett. 2017 Aug 1;364(14). doi: 10.1093/femsle/fnx148.


Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ, Hanson TE, Woyke T, Klotz MG, Hugenholtz P.

Front Microbiol. 2017 Apr 24;8:682. doi: 10.3389/fmicb.2017.00682. eCollection 2017. Erratum in: Front Microbiol. 2018 Apr 18;9:772.


Bayesian regression for group testing data.

McMahan CS, Tebbs JM, Hanson TE, Bilder CR.

Biometrics. 2017 Dec;73(4):1443-1452. doi: 10.1111/biom.12704. Epub 2017 Apr 12.


Diverse sulfur metabolisms from two subterranean sulfidic spring systems.

Rossmassler K, Hanson TE, Campbell BJ.

FEMS Microbiol Lett. 2016 Aug;363(16). pii: fnw162. doi: 10.1093/femsle/fnw162. Epub 2016 Jun 19.


A sulfide:quinone oxidoreductase from Chlorobaculum tepidum displays unusual kinetic properties.

Shuman KE, Hanson TE.

FEMS Microbiol Lett. 2016 Jun;363(12). pii: fnw100. doi: 10.1093/femsle/fnw100. Epub 2016 Apr 18.


D1FHS, the Type Strain of the Ammonia-Oxidizing Bacterium Nitrosococcus wardiae spec. nov.: Enrichment, Isolation, Phylogenetic, and Growth Physiological Characterization.

Wang L, Lim CK, Dang H, Hanson TE, Klotz MG.

Front Microbiol. 2016 Apr 14;7:512. doi: 10.3389/fmicb.2016.00512. eCollection 2016.


Mechanisms of extracellular S0 globule production and degradation in Chlorobaculumtepidum via dynamic cell-globule interactions.

Marnocha CL, Levy AT, Powell DH, Hanson TE, Chan CS.

Microbiology. 2016 Jul;162(7):1125-1134. doi: 10.1099/mic.0.000294. Epub 2016 Apr 26.


Back to the future: function-first metagenomics returns to the fore.

Hanson TE.

Environ Microbiol. 2016 Apr;18(4):1094-5. doi: 10.1111/1462-2920.13260. Epub 2016 Mar 18. No abstract available.


Bait Preference of Free-Ranging Feral Swine for Delivery of a Novel Toxicant.

Snow NP, Halseth JM, Lavelle MJ, Hanson TE, Blass CR, Foster JA, Humphrys ST, Staples LD, Hewitt DG, VerCauteren KC.

PLoS One. 2016 Jan 26;11(1):e0146712. doi: 10.1371/journal.pone.0146712. eCollection 2016.


Light-dependent sulfide oxidation in the anoxic zone of the Chesapeake Bay can be explained by small populations of phototrophic bacteria.

Findlay AJ, Bennett AJ, Hanson TE, Luther GW 3rd.

Appl Environ Microbiol. 2015 Nov;81(21):7560-9. doi: 10.1128/AEM.02062-15. Epub 2015 Aug 21.


Flexible regression models for ROC and risk analysis, with or without a gold standard.

Branscum AJ, Johnson WO, Hanson TE, Baron AT.

Stat Med. 2015 Dec 30;34(30):3997-4015. doi: 10.1002/sim.6610. Epub 2015 Aug 3.


Chlorobaculum tepidum growth on biogenic S(0) as the sole photosynthetic electron donor.

Hanson TE, Bonsu E, Tuerk A, Marnocha CL, Powell DH, Chan CS.

Environ Microbiol. 2016 Sep;18(9):2856-67. doi: 10.1111/1462-2920.12995. Epub 2015 Aug 28.


Phototrophic sulfide oxidation: environmental insights and a method for kinetic analysis.

Hanson TE, Luther GW 3rd, Findlay AJ, Macdonald DJ, Hess D.

Front Microbiol. 2013 Dec 19;4:382. doi: 10.3389/fmicb.2013.00382. Review.


Sample size requirements for establishing clinical test-retest standards.

McMillan GP, Hanson TE.

Ear Hear. 2014 Mar-Apr;35(2):283-6. doi: 10.1097/01.aud.0000438377.15003.6b.


Nitrate ammonification by Nautilia profundicola AmH: experimental evidence consistent with a free hydroxylamine intermediate.

Hanson TE, Campbell BJ, Kalis KM, Campbell MA, Klotz MG.

Front Microbiol. 2013 Jul 4;4:180. doi: 10.3389/fmicb.2013.00180. eCollection 2013.


Bioenergetics of photoheterotrophic bacteria in the oceans.

Kirchman DL, Hanson TE.

Environ Microbiol Rep. 2013 Apr;5(2):188-99. doi: 10.1111/j.1758-2229.2012.00367.x. Epub 2012 Jul 24. Review.


A Bayesian goodness of fit test and semiparametric generalization of logistic regression with measurement data.

Schörgendorfer A, Branscum AJ, Hanson TE.

Biometrics. 2013 Jun;69(2):508-19. doi: 10.1111/biom.12007. Epub 2013 Mar 14.


Chlorobaculum tepidum TLS displays a complex transcriptional response to sulfide addition.

Eddie BJ, Hanson TE.

J Bacteriol. 2013 Jan;195(2):399-408. doi: 10.1128/JB.01342-12. Epub 2012 Nov 16.


Volatile dimethyl polonium produced by aerobic marine microorganisms.

Bahrou AS, Ollivier PR, Hanson TE, Tessier E, Amouroux D, Church TM.

Environ Sci Technol. 2012 Oct 16;46(20):11402-7. doi: 10.1021/es3006546. Epub 2012 Sep 25.


A class of mixtures of dependent tail-free processes.

Jara A, Hanson TE.

Biometrika. 2011 Sep;98(3):553-566.


Isolation and characterization of a novel biomineral stalk-forming iron-oxidizing bacterium from a circumneutral groundwater seep.

Krepski ST, Hanson TE, Chan CS.

Environ Microbiol. 2012 Jul;14(7):1671-80. doi: 10.1111/j.1462-2920.2011.02652.x. Epub 2011 Dec 12.


The microbial sulfur cycle.

Klotz MG, Bryant DA, Hanson TE.

Front Microbiol. 2011 Dec 2;2:241. doi: 10.3389/fmicb.2011.00241. eCollection 2011. No abstract available.


The Polya Tree Sampler: Towards Efficient and Automatic Independent Metropolis-Hastings Proposals.

Hanson TE, Monteiro JV, Jara A.

J Comput Graph Stat. 2011 Mar 1;20(1):41-62.


Drivers of epsilonproteobacterial community composition in sulfidic caves and springs.

Rossmassler K, Engel AS, Twing KI, Hanson TE, Campbell BJ.

FEMS Microbiol Ecol. 2012 Feb;79(2):421-32. doi: 10.1111/j.1574-6941.2011.01231.x. Epub 2011 Nov 21.


Diagnostic performance tests for suspected scaphoid fractures differ with conventional and latent class analysis.

Buijze GA, Mallee WH, Beeres FJ, Hanson TE, Johnson WO, Ring D.

Clin Orthop Relat Res. 2011 Dec;469(12):3400-7. doi: 10.1007/s11999-011-2074-9. Epub 2011 Sep 30.


Thermodynamics and kinetics of sulfide oxidation by oxygen: a look at inorganically controlled reactions and biologically mediated processes in the environment.

Luther GW 3rd, Findlay AJ, Macdonald DJ, Owings SM, Hanson TE, Beinart RA, Girguis PR.

Front Microbiol. 2011 Apr 9;2:62. doi: 10.3389/fmicb.2011.00062. eCollection 2011.


DPpackage: Bayesian Non- and Semi-parametric Modelling in R.

Jara A, Hanson TE, Quintana FA, Müller P, Rosner GL.

J Stat Softw. 2011 Apr 1;40(5):1-30.


Sulfite oxidation in chlorobaculum tepidum.

Rodriguez J, Hiras J, Hanson TE.

Front Microbiol. 2011 May 23;2:112. doi: 10.3389/fmicb.2011.00112. eCollection 2011.


A statistical model of horizontal auditory localization performance data.

McMillan GP, Saunders G, Hanson TE.

J Acoust Soc Am. 2011 Jun;129(6):EL229-35. doi: 10.1121/1.3571536.


Aeration controls the reduction and methylation of tellurium by the aerobic, tellurite-resistant marine yeast Rhodotorula mucilaginosa.

Ollivier PR, Bahrou AS, Church TM, Hanson TE.

Appl Environ Microbiol. 2011 Jul;77(13):4610-7. doi: 10.1128/AEM.00351-11. Epub 2011 May 20.


Spatially dependent polya tree modeling for survival data.

Zhao L, Hanson TE.

Biometrics. 2011 Jun;67(2):391-403. doi: 10.1111/j.1541-0420.2010.01468.x. Epub 2010 Aug 19.


Risk factors for abortion in dairy cows from commercial Holstein dairy herds in the Tehran region.

Rafati N, Mehrabani-Yeganeh H, Hanson TE.

Prev Vet Med. 2010 Sep 1;96(3-4):170-8. doi: 10.1016/j.prevetmed.2010.05.008. Epub 2010 Jul 2.


Beyond the genome: functional studies of phototrophic sulfur oxidation.

Hanson TE, Morgan-Kiss RM, Chan LK, Hiras J.

Adv Exp Med Biol. 2010;675:109-21. doi: 10.1007/978-1-4419-1528-3_7.


Predictive comparison of joint longitudinal-survival modeling: a case study illustrating competing approaches.

Hanson TE, Branscum AJ, Johnson WO.

Lifetime Data Anal. 2011 Jan;17(1):3-28. doi: 10.1007/s10985-010-9162-0. Epub 2010 Apr 6.


The effect of nutrient deposition on bacterial communities in Arctic tundra soil.

Campbell BJ, Polson SW, Hanson TE, Mack MC, Schuur EA.

Environ Microbiol. 2010 Jul;12(7):1842-54. doi: 10.1111/j.1462-2920.2010.02189.x. Epub 2010 Mar 7.


Mixtures of Polya trees for flexible spatial frailty survival modelling.

Zhao L, Hanson TE, Carlin BP.

Biometrika. 2009 Jun 1;96(2):263-276.


Native plant and microbial contributions to a negative plant-plant interaction.

Bains G, Kumar AS, Rudrappa T, Alff E, Hanson TE, Bais HP.

Plant Physiol. 2009 Dec;151(4):2145-51. doi: 10.1104/pp.109.146407. Epub 2009 Sep 23.


Identifiability of models for multiple diagnostic testing in the absence of a gold standard.

Jones G, Johnson WO, Hanson TE, Christensen R.

Biometrics. 2010 Sep;66(3):855-63. doi: 10.1111/j.1541-0420.2009.01330.x.


Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.

Campbell BJ, Smith JL, Hanson TE, Klotz MG, Stein LY, Lee CK, Wu D, Robinson JM, Khouri HM, Eisen JA, Cary SC.

PLoS Genet. 2009 Feb;5(2):e1000362. doi: 10.1371/journal.pgen.1000362. Epub 2009 Feb 6.


Chemopreventive effect of kava on 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone plus benzo[a]pyrene-induced lung tumorigenesis in A/J mice.

Johnson TE, Kassie F, O'Sullivan MG, Negia M, Hanson TE, Upadhyaya P, Ruvolo PP, Hecht SS, Xing C.

Cancer Prev Res (Phila). 2008 Nov;1(6):430-8. doi: 10.1158/1940-6207.CAPR-08-0027.

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