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Items: 13


A geographically-diverse collection of 418 human gut microbiome pathway genome databases.

Hahn AS, Altman T, Konwar KM, Hanson NW, Kim D, Relman DA, Dill DL, Hallam SJ.

Sci Data. 2017 Apr 11;4:170035. doi: 10.1038/sdata.2017.35.


LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes.

Hanson NW, Konwar KM, Hallam SJ.

Bioinformatics. 2016 Dec 1;32(23):3535-3542. Epub 2016 Aug 11.


The information science of microbial ecology.

Hahn AS, Konwar KM, Louca S, Hanson NW, Hallam SJ.

Curr Opin Microbiol. 2016 Jun;31:209-216. doi: 10.1016/j.mib.2016.04.014. Epub 2016 May 13. Review.


MetaPathways v2.5: quantitative functional, taxonomic and usability improvements.

Konwar KM, Hanson NW, Bhatia MP, Kim D, Wu SJ, Hahn AS, Morgan-Lang C, Cheung HK, Hallam SJ.

Bioinformatics. 2015 Oct 15;31(20):3345-7. doi: 10.1093/bioinformatics/btv361. Epub 2015 Jun 15.


Rare taxa have potential to make metabolic contributions in enhanced biological phosphorus removal ecosystems.

Lawson CE, Strachan BJ, Hanson NW, Hahn AS, Hall ER, Rabinowitz B, Mavinic DS, Ramey WD, Hallam SJ.

Environ Microbiol. 2015 Dec;17(12):4979-93. doi: 10.1111/1462-2920.12875. Epub 2015 May 14.


Metabolic pathways for the whole community.

Hanson NW, Konwar KM, Hawley AK, Altman T, Karp PD, Hallam SJ.

BMC Genomics. 2014 Jul 22;15:619. doi: 10.1186/1471-2164-15-619.


Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle.

Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ.

ISME J. 2014 Feb;8(2):455-68. doi: 10.1038/ismej.2013.152. Epub 2013 Sep 12.


Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common.

An D, Caffrey SM, Soh J, Agrawal A, Brown D, Budwill K, Dong X, Dunfield PF, Foght J, Gieg LM, Hallam SJ, Hanson NW, He Z, Jack TR, Klassen J, Konwar KM, Kuatsjah E, Li C, Larter S, Leopatra V, Nesbø CL, Oldenburg T, Pagé AP, Ramos-Padron E, Rochman FF, Saidi-Mehrabad A, Sensen CW, Sipahimalani P, Song YC, Wilson S, Wolbring G, Wong ML, Voordouw G.

Environ Sci Technol. 2013 Sep 17;47(18):10708-17. doi: 10.1021/es4020184. Epub 2013 Aug 26.


Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.

Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, Moran MA, Hallam SJ, Cavicchioli R, Woyke T, Stepanauskas R.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11463-8. doi: 10.1073/pnas.1304246110. Epub 2013 Jun 25.


MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information.

Konwar KM, Hanson NW, Pagé AP, Hallam SJ.

BMC Bioinformatics. 2013 Jun 21;14:202. doi: 10.1186/1471-2105-14-202.


Expanding the boundaries of local similarity analysis.

Durno WE, Hanson NW, Konwar KM, Hallam SJ.

BMC Genomics. 2013;14 Suppl 1:S3. doi: 10.1186/1471-2164-14-S1-S3. Epub 2013 Jan 21.


A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities.

Leung K, Zahn H, Leaver T, Konwar KM, Hanson NW, Pagé AP, Lo CC, Chain PS, Hallam SJ, Hansen CL.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7665-70. doi: 10.1073/pnas.1106752109. Epub 2012 Apr 30.


JAAD grand rounds quiz. Linear scalp plaques.

Pinoli ML, Hanson NW, Wells MJ, Stetson CL.

J Am Acad Dermatol. 2010 Mar;62(3):538-9. doi: 10.1016/j.jaad.2009.05.036. No abstract available.


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