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Items: 1 to 50 of 216

1.

Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey.

Seersholm FV, Cole TL, Grealy A, Rawlence NJ, Greig K, Knapp M, Stat M, Hansen AJ, Easton LJ, Shepherd L, Tennyson AJD, Scofield RP, Walter R, Bunce M.

Proc Natl Acad Sci U S A. 2018 Jul 9. pii: 201803573. doi: 10.1073/pnas.1803573115. [Epub ahead of print]

2.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
3.

Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans.

Mühlemann B, Margaryan A, Damgaard PB, Allentoft ME, Vinner L, Hansen AJ, Weber A, Bazaliiskii VI, Molak M, Arneborg J, Bogdanowicz W, Falys C, Sablin M, Smrčka V, Sten S, Tashbaeva K, Lynnerup N, Sikora M, Smith DJ, Fouchier RAM, Drosten C, Sjögren KG, Kristiansen K, Willerslev E, Jones TC.

Proc Natl Acad Sci U S A. 2018 Jul 17;115(29):7557-7562. doi: 10.1073/pnas.1804921115. Epub 2018 Jul 2.

PMID:
29967156
4.

Parasitic infections and resource economy of Danish Iron Age settlement through ancient DNA sequencing.

Tams KW, Jensen Søe M, Merkyte I, Valeur Seersholm F, Henriksen PS, Klingenberg S, Willerslev E, Kjær KH, Hansen AJ, Kapel CMO.

PLoS One. 2018 Jun 20;13(6):e0197399. doi: 10.1371/journal.pone.0197399. eCollection 2018.

5.

Greenland sled dogs at risk of extinction.

Sonne C, Langebæk R, Dietz R, Andersen-Ranberg E, Houser G, Hansen AJ, Sinding MS, Olsen MT, Egevang C, Gilbert MTP, Meldgaard M.

Science. 2018 Jun 8;360(6393):1080. doi: 10.1126/science.aat9578. No abstract available.

PMID:
29880678
6.

Ancient hepatitis B viruses from the Bronze Age to the Medieval period.

Mühlemann B, Jones TC, Damgaard PB, Allentoft ME, Shevnina I, Logvin A, Usmanova E, Panyushkina IP, Boldgiv B, Bazartseren T, Tashbaeva K, Merz V, Lau N, Smrčka V, Voyakin D, Kitov E, Epimakhov A, Pokutta D, Vicze M, Price TD, Moiseyev V, Hansen AJ, Orlando L, Rasmussen S, Sikora M, Vinner L, Osterhaus ADME, Smith DJ, Glebe D, Fouchier RAM, Drosten C, Sjögren KG, Kristiansen K, Willerslev E.

Nature. 2018 May;557(7705):418-423. doi: 10.1038/s41586-018-0097-z. Epub 2018 May 9.

PMID:
29743673
7.

Putting Climate Adaptation on the Map: Developing Spatial Management Strategies for Whitebark Pine in the Greater Yellowstone Ecosystem.

Ireland KB, Hansen AJ, Keane RE, Legg K, Gump RL.

Environ Manage. 2018 Jun;61(6):981-1001. doi: 10.1007/s00267-018-1029-2. Epub 2018 Mar 29.

PMID:
29600435
8.

Circular DNA elements of chromosomal origin are common in healthy human somatic tissue.

Møller HD, Mohiyuddin M, Prada-Luengo I, Sailani MR, Halling JF, Plomgaard P, Maretty L, Hansen AJ, Snyder MP, Pilegaard H, Lam HYK, Regenberg B.

Nat Commun. 2018 Mar 14;9(1):1069. doi: 10.1038/s41467-018-03369-8.

9.

Correction to: Cancer associated fibroblasts (CAFs) are activated in cutaneous basal cell carcinoma and in the peritumoural skin.

Omland SH, Wettergren EE, Mollerup S, Asplund M, Mourier T, Hansen AJ, Gniadecki R.

BMC Cancer. 2018 Jan 30;18(1):111. doi: 10.1186/s12885-018-3987-4.

10.

Mitochondrial DNA of pre-last glacial maximum red deer from NW Spain suggests a more complex phylogeographical history for the species.

Rey-Iglesia A, Grandal-d'Anglade A, Campos PF, Hansen AJ.

Ecol Evol. 2017 Nov 7;7(24):10690-10700. doi: 10.1002/ece3.3553. eCollection 2017 Dec.

11.

C5a and C5aR are elevated in joints of rheumatoid and psoriatic arthritis patients, and C5aR blockade attenuates leukocyte migration to synovial fluid.

Hornum L, Hansen AJ, Tornehave D, Fjording MS, Colmenero P, Wätjen IF, Søe Nielsen NH, Bliddal H, Bartels EM.

PLoS One. 2017 Dec 8;12(12):e0189017. doi: 10.1371/journal.pone.0189017. eCollection 2017.

12.

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates.

Frøslev TG, Kjøller R, Bruun HH, Ejrnæs R, Brunbjerg AK, Pietroni C, Hansen AJ.

Nat Commun. 2017 Oct 30;8(1):1188. doi: 10.1038/s41467-017-01312-x.

13.

Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites.

Liu YH, Wang L, Xu T, Guo X, Li Y, Yin TT, Yang HC, Hu Y, Adeola AC, Sanke OJ, Otecko NO, Wang M, Ma Y, Charles OS, Sinding MS, Gopalakrishnan S, Alfredo Samaniego J, Hansen AJ, Fernandes C, Gaubert P, Budd J, Dawuda PM, Knispel Rueness E, Jiang L, Zhai W, Gilbert MTP, Peng MS, Qi X, Wang GD, Zhang YP.

Mol Biol Evol. 2018 Feb 1;35(2):287-298. doi: 10.1093/molbev/msx258.

PMID:
29040727
14.

Cancer associated fibroblasts (CAFs) are activated in cutaneous basal cell carcinoma and in the peritumoural skin.

Omland SH, Wettergren EE, Mollerup S, Asplund M, Mourier T, Hansen AJ, Gniadecki R.

BMC Cancer. 2017 Oct 7;17(1):675. doi: 10.1186/s12885-017-3663-0. Erratum in: BMC Cancer. 2018 Jan 30;18(1):111.

15.

High Y-chromosomal Differentiation Among Ethnic Groups of Dir and Swat Districts, Pakistan.

Ullah I, Olofsson JK, Margaryan A, Ilardo M, Ahmad H, Sikora M, Hansen AJ, Shahid Nadeem M, Fazal N, Ali M, Buchard A, Hemphill BE, Willerslev E, Allentoft ME.

Ann Hum Genet. 2017 Nov;81(6):234-248. doi: 10.1111/ahg.12204. Epub 2017 Aug 3.

PMID:
28771684
16.

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics.

Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP.

BMC Genomics. 2017 Jun 29;18(1):495. doi: 10.1186/s12864-017-3883-3.

17.

The endothelial border to health: Mechanistic evidence of the hyperglycemic culprit of inflammatory disease acceleration.

Hansen NW, Hansen AJ, Sams A.

IUBMB Life. 2017 Mar;69(3):148-161. doi: 10.1002/iub.1610. Review.

18.

Cutavirus in Cutaneous Malignant Melanoma.

Mollerup S, Fridholm H, Vinner L, Kjartansdóttir KR, Friis-Nielsen J, Asplund M, Herrera JA, Steiniche T, Mourier T, Brunak S, Willerslev E, Izarzugaza JM, Hansen AJ, Nielsen LP.

Emerg Infect Dis. 2017 Feb;23(2):363-365. doi: 10.3201/eid2302.161564.

19.

Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms.

Harms K, Lunnan A, Hülter N, Mourier T, Vinner L, Andam CP, Marttinen P, Fridholm H, Hansen AJ, Hanage WP, Nielsen KM, Willerslev E, Johnsen PJ.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15066-15071. doi: 10.1073/pnas.1615819114. Epub 2016 Dec 12.

20.

DNA evidence of bowhead whale exploitation by Greenlandic Paleo-Inuit 4,000 years ago.

Seersholm FV, Pedersen MW, Søe MJ, Shokry H, Mak SS, Ruter A, Raghavan M, Fitzhugh W, Kjær KH, Willerslev E, Meldgaard M, Kapel CM, Hansen AJ.

Nat Commun. 2016 Nov 8;7:13389. doi: 10.1038/ncomms13389.

21.

GLP-1 inhibits VEGFA-mediated signaling in isolated human endothelial cells and VEGFA-induced dilation of rat mesenteric arteries.

Egholm C, Khammy MM, Dalsgaard T, Mazur A, Tritsaris K, Hansen AJ, Aalkjaer C, Dissing S.

Am J Physiol Heart Circ Physiol. 2016 Nov 1;311(5):H1214-H1224. doi: 10.1152/ajpheart.00316.2016. Epub 2016 Sep 16.

22.

High diversity of picornaviruses in rats from different continents revealed by deep sequencing.

Hansen TA, Mollerup S, Nguyen NP, White NE, Coghlan M, Alquezar-Planas DE, Joshi T, Jensen RH, Fridholm H, Kjartansdóttir KR, Mourier T, Warnow T, Belsham GJ, Bunce M, Willerslev E, Nielsen LP, Vinner L, Hansen AJ.

Emerg Microbes Infect. 2016 Aug 17;5(8):e90. doi: 10.1038/emi.2016.90.

23.

Vancomycin gene selection in the microbiome of urban Rattus norvegicus from hospital environment.

Hansen TA, Joshi T, Larsen AR, Andersen PS, Harms K, Mollerup S, Willerslev E, Fuursted K, Nielsen LP, Hansen AJ.

Evol Med Public Health. 2016 Aug 3;2016(1):219-26. doi: 10.1093/emph/eow021. Print 2016.

24.

The Volume Activated Potassium Channel KCNK5 is Up-Regulated in Activated Human T Cells, but Volume Regulation is Impaired.

Kirkegaard SS, Strøm PD, Gammeltoft S, Hansen AJ, Hoffmann EK.

Cell Physiol Biochem. 2016;38(3):883-92. doi: 10.1159/000443042. Epub 2016 Feb 25.

25.

Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.

Friis-Nielsen J, Kjartansdóttir KR, Mollerup S, Asplund M, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Nielsen IB, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Nielsen LP, Willerslev E, Sicheritz-Pontén T, Lund O, Hansen AJ, Izarzugaza JM, Brunak S.

Viruses. 2016 Feb 19;8(2). pii: E53. doi: 10.3390/v8020053.

26.

Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing.

Mollerup S, Friis-Nielsen J, Vinner L, Hansen TA, Richter SR, Fridholm H, Herrera JA, Lund O, Brunak S, Izarzugaza JM, Mourier T, Nielsen LP, Hansen AJ.

J Clin Microbiol. 2016 Apr;54(4):980-7. doi: 10.1128/JCM.02723-15. Epub 2016 Jan 27.

27.

Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae.

Møller HD, Larsen CE, Parsons L, Hansen AJ, Regenberg B, Mourier T.

G3 (Bethesda). 2015 Dec 17;6(2):453-62. doi: 10.1534/g3.115.025858.

28.

New Type of Papillomavirus and Novel Circular Single Stranded DNA Virus Discovered in Urban Rattus norvegicus Using Circular DNA Enrichment and Metagenomics.

Hansen TA, Fridholm H, Frøslev TG, Kjartansdóttir KR, Willerslev E, Nielsen LP, Hansen AJ.

PLoS One. 2015 Nov 11;10(11):e0141952. doi: 10.1371/journal.pone.0141952. eCollection 2015.

29.

Characterizing novel endogenous retroviruses from genetic variation inferred from short sequence reads.

Mourier T, Mollerup S, Vinner L, Hansen TA, Kjartansdóttir KR, Guldberg Frøslev T, Snogdal Boutrup T, Nielsen LP, Willerslev E, Hansen AJ.

Sci Rep. 2015 Oct 23;5:15644. doi: 10.1038/srep15644.

30.

Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing.

Vinner L, Mourier T, Friis-Nielsen J, Gniadecki R, Dybkaer K, Rosenberg J, Langhoff JL, Cruz DF, Fonager J, Izarzugaza JM, Gupta R, Sicheritz-Ponten T, Brunak S, Willerslev E, Nielsen LP, Hansen AJ.

Sci Rep. 2015 Aug 19;5:13201. doi: 10.1038/srep13201.

31.

Draft Genome Sequence of the First Human Isolate of the Ruminant Pathogen Mycoplasma capricolum subsp. capricolum.

Seersholm FV, Fischer A, Heller M, Jores J, Sachse K, Mourier T, Hansen AJ.

Genome Announc. 2015 Jun 18;3(3). pii: e00583-15. doi: 10.1128/genomeA.00583-15.

32.

Target-dependent enrichment of virions determines the reduction of high-throughput sequencing in virus discovery.

Jensen RH, Mollerup S, Mourier T, Hansen TA, Fridholm H, Nielsen LP, Willerslev E, Hansen AJ, Vinner L.

PLoS One. 2015 Apr 8;10(4):e0122636. doi: 10.1371/journal.pone.0122636. eCollection 2015.

33.

Traces of ATCV-1 associated with laboratory component contamination.

Kjartansdóttir KR, Friis-Nielsen J, Asplund M, Mollerup S, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Sicheritz-Pontén T, Nielsen LP, Brunak S, Willerslev E, Izarzugaza JM, Hansen AJ.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E925-6. doi: 10.1073/pnas.1423756112. Epub 2015 Feb 5. No abstract available.

34.

Cutting Edge: identification of neutrophil PGLYRP1 as a ligand for TREM-1.

Read CB, Kuijper JL, Hjorth SA, Heipel MD, Tang X, Fleetwood AJ, Dantzler JL, Grell SN, Kastrup J, Wang C, Brandt CS, Hansen AJ, Wagtmann NR, Xu W, Stennicke VW.

J Immunol. 2015 Feb 15;194(4):1417-21. doi: 10.4049/jimmunol.1402303. Epub 2015 Jan 16.

35.

Ancient genomics.

Der Sarkissian C, Allentoft ME, Ávila-Arcos MC, Barnett R, Campos PF, Cappellini E, Ermini L, Fernández R, da Fonseca R, Ginolhac A, Hansen AJ, Jónsson H, Korneliussen T, Margaryan A, Martin MD, Moreno-Mayar JV, Raghavan M, Rasmussen M, Velasco MS, Schroeder H, Schubert M, Seguin-Orlando A, Wales N, Gilbert MT, Willerslev E, Orlando L.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130387. doi: 10.1098/rstb.2013.0387. Review.

36.

Ancient and modern environmental DNA.

Pedersen MW, Overballe-Petersen S, Ermini L, Sarkissian CD, Haile J, Hellstrom M, Spens J, Thomsen PF, Bohmann K, Cappellini E, Schnell IB, Wales NA, Carøe C, Campos PF, Schmidt AM, Gilbert MT, Hansen AJ, Orlando L, Willerslev E.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130383. doi: 10.1098/rstb.2013.0383. Review.

37.

Patterns and variability of projected bioclimatic habitat for Pinus albicaulis in the Greater Yellowstone Area.

Chang T, Hansen AJ, Piekielek N.

PLoS One. 2014 Nov 5;9(11):e111669. doi: 10.1371/journal.pone.0111669. eCollection 2014.

38.

Transposable elements in cancer as a by-product of stress-induced evolvability.

Mourier T, Nielsen LP, Hansen AJ, Willerslev E.

Front Genet. 2014 May 30;5:156. doi: 10.3389/fgene.2014.00156. eCollection 2014.

39.

Massively parallel pyrosequencing of the mitochondrial genome with the 454 methodology in forensic genetics.

Mikkelsen M, Frank-Hansen R, Hansen AJ, Morling N.

Forensic Sci Int Genet. 2014 Sep;12:30-7. doi: 10.1016/j.fsigen.2014.03.014. Epub 2014 Apr 6.

PMID:
24879032
40.

Exposure of U.S. National Parks to land use and climate change 1900-2100.

Hansen AJ, Piekielek N, Davis C, Haas J, Theobald DM, Gross JE, Monahan WB, Olliff T, Running SW.

Ecol Appl. 2014 Apr;24(3):484-502.

PMID:
24834735
41.

IL-17A potentiates TNFα-induced secretion from human endothelial cells and alters barrier functions controlling neutrophils rights of passage.

Bosteen MH, Tritsaris K, Hansen AJ, Dissing S.

Pflugers Arch. 2014 May;466(5):961-72. doi: 10.1007/s00424-013-1354-5. Epub 2013 Sep 27.

42.

Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing.

Alquezar-Planas DE, Mourier T, Bruhn CA, Hansen AJ, Vitcetz SN, Mørk S, Gorodkin J, Nielsen HA, Guo Y, Sethuraman A, Paxinos EE, Shan T, Delwart EL, Nielsen LP.

Sci Rep. 2013;3:2468. doi: 10.1038/srep02468.

43.

Woodland dynamics at the northern range periphery: a challenge for protected area management in a changing world.

Powell SL, Hansen AJ, Rodhouse TJ, Garrett LK, Betancourt JL, Dicus GH, Lonneker MK.

PLoS One. 2013 Jul 29;8(7):e70454. doi: 10.1371/journal.pone.0070454. Print 2013.

44.

Evaluation of four automated protocols for extraction of DNA from FTA cards.

Stangegaard M, Børsting C, Ferrero-Miliani L, Frank-Hansen R, Poulsen L, Hansen AJ, Morling N.

J Lab Autom. 2013 Oct;18(5):404-10. doi: 10.1177/2211068213484472. Epub 2013 Apr 10.

PMID:
23574642
45.

Automated extraction of DNA from biological stains on fabric from crime cases. A comparison of a manual and three automated methods.

Stangegaard M, Hjort BB, Hansen TN, Hoflund A, Mogensen HS, Hansen AJ, Morling N.

Forensic Sci Int Genet. 2013 May;7(3):384-8. doi: 10.1016/j.fsigen.2012.12.009. Epub 2013 Jan 18.

PMID:
23333808
46.

Collaborative interplay between FGF-2 and VEGF-C promotes lymphangiogenesis and metastasis.

Cao R, Ji H, Feng N, Zhang Y, Yang X, Andersson P, Sun Y, Tritsaris K, Hansen AJ, Dissing S, Cao Y.

Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15894-9. Epub 2012 Sep 11.

47.

Biomek 3000: the workhorse in an automated accredited forensic genetic laboratory.

Stangegaard M, Meijer PJ, Børsting C, Hansen AJ, Morling N.

J Lab Autom. 2012 Oct;17(5):378-86. Epub 2012 May 31.

PMID:
22651936
48.

Forensic and phylogeographic characterisation of mtDNA lineages from Somalia.

Mikkelsen M, Fendt L, Röck AW, Zimmermann B, Rockenbauer E, Hansen AJ, Parson W, Morling N.

Int J Legal Med. 2012 Jul;126(4):573-9. doi: 10.1007/s00414-012-0694-6. Epub 2012 Apr 14.

PMID:
22527188
49.

Postpartum rupture of the posteromedial papillary muscle.

Hansen AJ, Sorrell VL, Cooper AD, Moulton MJ.

J Card Surg. 2012 May;27(3):313-6. doi: 10.1111/j.1540-8191.2011.01369.x. Epub 2012 Feb 7.

PMID:
22309297
50.

Narrative ability of children with speech sound disorders and the prediction of later literacy skills.

Wellman RL, Lewis BA, Freebairn LA, Avrich AA, Hansen AJ, Stein CM.

Lang Speech Hear Serv Sch. 2011 Oct;42(4):561-79. doi: 10.1044/0161-1461(2011/10-0038).

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