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Items: 1 to 50 of 124

1.

Identification of Candidate Signature Genes and Key Regulators Associated With Trypanotolerance in the Sheko Breed.

Mekonnen YA, Gültas M, Effa K, Hanotte O, Schmitt AO.

Front Genet. 2019 Nov 14;10:1095. doi: 10.3389/fgene.2019.01095. eCollection 2019.

2.

Whole metagenome sequencing of cecum microbiomes in Ethiopian indigenous chickens from two different altitudes reveals antibiotic resistance genes.

Kumar H, Park W, Lim D, Srikanth K, Kim JM, Jia XZ, Han JL, Hanotte O, Park JE, Oyola SO.

Genomics. 2019 Nov 21. pii: S0888-7543(19)30577-4. doi: 10.1016/j.ygeno.2019.11.011. [Epub ahead of print]

PMID:
31759120
3.

Genome Diversity and Signatures of Selection for Production and Performance Traits in Dromedary Camels.

Bahbahani H, Musa HH, Wragg D, Shuiep ES, Almathen F, Hanotte O.

Front Genet. 2019 Sep 19;10:893. doi: 10.3389/fgene.2019.00893. eCollection 2019.

4.

Genome Analysis Reveals Genetic Admixture and Signature of Selection for Productivity and Environmental Traits in Iraqi Cattle.

Alshawi A, Essa A, Al-Bayatti S, Hanotte O.

Front Genet. 2019 Jul 16;10:609. doi: 10.3389/fgene.2019.00609. eCollection 2019.

5.

Genome Sequence Analysis Reveals Selection Signatures in Endangered Trypanotolerant West African Muturu Cattle.

Tijjani A, Utsunomiya YT, Ezekwe AG, Nashiru O, Hanotte O.

Front Genet. 2019 Jun 4;10:442. doi: 10.3389/fgene.2019.00442. eCollection 2019.

6.

Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia.

Mastrangelo S, Bahbahani H, Moioli B, Ahbara A, Al Abri M, Almathen F, da Silva A, Belabdi I, Portolano B, Mwacharo JM, Hanotte O, Pilla F, Ciani E.

PLoS One. 2019 Jun 14;14(6):e0209632. doi: 10.1371/journal.pone.0209632. eCollection 2019.

7.

Comparative analysis of the chicken IFITM locus by targeted genome sequencing reveals evolution of the locus and positive selection in IFITM1 and IFITM3.

Bassano I, Ong SH, Sanz-Hernandez M, Vinkler M, Kebede A, Hanotte O, Onuigbo E, Fife M, Kellam P.

BMC Genomics. 2019 Apr 5;20(1):272. doi: 10.1186/s12864-019-5621-5.

8.

Genome-Wide Variation, Candidate Regions and Genes Associated With Fat Deposition and Tail Morphology in Ethiopian Indigenous Sheep.

Ahbara A, Bahbahani H, Almathen F, Al Abri M, Agoub MO, Abeba A, Kebede A, Musa HH, Mastrangelo S, Pilla F, Ciani E, Hanotte O, Mwacharo JM.

Front Genet. 2019 Jan 9;9:699. doi: 10.3389/fgene.2018.00699. eCollection 2018.

9.

Association of Copy Number Variation at Intron 3 of HMGA2 With Navel Length in Bos indicus.

Aguiar TS, Torrecilha RBP, Milanesi M, Utsunomiya ATH, Trigo BB, Tijjani A, Musa HH, Lopes FL, Ajmone-Marsan P, Carvalheiro R, Neves HHR, do Carmo AS, Hanotte O, Sonstegard TS, Garcia JF, Utsunomiya YT.

Front Genet. 2018 Dec 7;9:627. doi: 10.3389/fgene.2018.00627. eCollection 2018.

10.

The role of local adaptation in sustainable village chicken production.

Bettridge JM, Psifidi A, Terfa ZG, Desta TT, Lozano-Jaramillo M, Dessie T, Kaiser P, Wigley P, Hanotte O, Christley RM.

Nat Sustain. 2018 Oct;1(10):574-582. doi: 10.1038/s41893-018-0150-9. Epub 2018 Oct 15.

11.

Whole-Genome Resequencing of Red Junglefowl and Indigenous Village Chicken Reveal New Insights on the Genome Dynamics of the Species.

Lawal RA, Al-Atiyat RM, Aljumaah RS, Silva P, Mwacharo JM, Hanotte O.

Front Genet. 2018 Jul 20;9:264. doi: 10.3389/fgene.2018.00264. eCollection 2018.

12.

Polymorphisms in MC1R and ASIP Genes are Associated with Coat Color Variation in the Arabian Camel.

Almathen F, Elbir H, Bahbahani H, Mwacharo J, Hanotte O.

J Hered. 2018 Aug 24;109(6):700-706. doi: 10.1093/jhered/esy024.

13.

c-Myc inhibits myoblast differentiation and promotes myoblast proliferation and muscle fibre hypertrophy by regulating the expression of its target genes, miRNAs and lincRNAs.

Luo W, Chen J, Li L, Ren X, Cheng T, Lu S, Lawal RA, Nie Q, Zhang X, Hanotte O.

Cell Death Differ. 2019 Mar;26(3):426-442. doi: 10.1038/s41418-018-0129-0. Epub 2018 May 21.

PMID:
29786076
14.

Signatures of positive selection in African Butana and Kenana dairy zebu cattle.

Bahbahani H, Salim B, Almathen F, Al Enezi F, Mwacharo JM, Hanotte O.

PLoS One. 2018 Jan 4;13(1):e0190446. doi: 10.1371/journal.pone.0190446. eCollection 2018.

15.

Genome-wide SNP data unveils the globalization of domesticated pigs.

Yang B, Cui L, Perez-Enciso M, Traspov A, Crooijmans RPMA, Zinovieva N, Schook LB, Archibald A, Gatphayak K, Knorr C, Triantafyllidis A, Alexandri P, Semiadi G, Hanotte O, Dias D, Dovč P, Uimari P, Iacolina L, Scandura M, Groenen MAM, Huang L, Megens HJ.

Genet Sel Evol. 2017 Sep 21;49(1):71. doi: 10.1186/s12711-017-0345-y.

16.

Exploring evidence of positive selection signatures in cattle breeds selected for different traits.

Taye M, Lee W, Jeon S, Yoon J, Dessie T, Hanotte O, Mwai OA, Kemp S, Cho S, Oh SJ, Lee HK, Kim H.

Mamm Genome. 2017 Dec;28(11-12):528-541. doi: 10.1007/s00335-017-9715-6. Epub 2017 Sep 13.

PMID:
28905131
17.

Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance.

Taye M, Lee W, Caetano-Anolles K, Dessie T, Hanotte O, Mwai OA, Kemp S, Cho S, Oh SJ, Lee HK, Kim H.

Anim Sci J. 2017 Dec;88(12):1889-1901. doi: 10.1111/asj.12851. Epub 2017 Jul 27.

PMID:
28748670
18.

Whole genome structural analysis of Caribbean hair sheep reveals quantitative link to West African ancestry.

Spangler GL, Rosen BD, Ilori MB, Hanotte O, Kim ES, Sonstegard TS, Burke JM, Morgan JLM, Notter DR, Van Tassell CP.

PLoS One. 2017 Jun 29;12(6):e0179021. doi: 10.1371/journal.pone.0179021. eCollection 2017.

19.

Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu.

Bahbahani H, Tijjani A, Mukasa C, Wragg D, Almathen F, Nash O, Akpa GN, Mbole-Kariuki M, Malla S, Woolhouse M, Sonstegard T, Van Tassell C, Blythe M, Huson H, Hanotte O.

Front Genet. 2017 Jun 8;8:68. doi: 10.3389/fgene.2017.00068. eCollection 2017.

20.

Cattle genome-wide analysis reveals genetic signatures in trypanotolerant N'Dama.

Kim SJ, Ka S, Ha JW, Kim J, Yoo D, Kim K, Lee HK, Lim D, Cho S, Hanotte O, Mwai OA, Dessie T, Kemp S, Oh SJ, Kim H.

BMC Genomics. 2017 May 12;18(1):371. doi: 10.1186/s12864-017-3742-2.

21.

The genome landscape of indigenous African cattle.

Kim J, Hanotte O, Mwai OA, Dessie T, Bashir S, Diallo B, Agaba M, Kim K, Kwak W, Sung S, Seo M, Jeong H, Kwon T, Taye M, Song KD, Lim D, Cho S, Lee HJ, Yoon D, Oh SJ, Kemp S, Lee HK, Kim H.

Genome Biol. 2017 Feb 20;18(1):34. doi: 10.1186/s13059-017-1153-y.

22.

Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef.

Taye M, Kim J, Yoon SH, Lee W, Hanotte O, Dessie T, Kemp S, Mwai OA, Caetano-Anolles K, Cho S, Oh SJ, Lee HK, Kim H.

BMC Genet. 2017 Feb 9;18(1):11. doi: 10.1186/s12863-016-0467-1.

23.

Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes.

Psifidi A, Banos G, Matika O, Desta TT, Bettridge J, Hume DA, Dessie T, Christley R, Wigley P, Hanotte O, Kaiser P.

Genet Sel Evol. 2016 Sep 29;48(1):74.

24.

Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya.

Callaby R, Toye P, Jennings A, Thumbi SM, Coetzer JA, Conradie Van Wyk IC, Hanotte O, Mbole-Kariuki MN, Bronsvoort BM, Kruuk LE, Woolhouse ME, Kiara H.

Res Vet Sci. 2016 Oct;108:120-4. doi: 10.1016/j.rvsc.2016.08.010. Epub 2016 Aug 26.

25.

Reply to Marom et al.: Mitochondrial panmixia in dromedaries predates ancient caravan trading.

Burger PA, Peters J, Magee P, Hanotte O.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):E4583-4. doi: 10.1073/pnas.1609984113. Epub 2016 Aug 2. No abstract available.

26.

Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary.

Almathen F, Charruau P, Mohandesan E, Mwacharo JM, Orozco-terWengel P, Pitt D, Abdussamad AM, Uerpmann M, Uerpmann HP, De Cupere B, Magee P, Alnaqeeb MA, Salim B, Raziq A, Dessie T, Abdelhadi OM, Banabazi MH, Al-Eknah M, Walzer C, Faye B, Hofreiter M, Peters J, Hanotte O, Burger PA.

Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):6707-12. doi: 10.1073/pnas.1519508113. Epub 2016 May 9.

27.

Co-infections determine patterns of mortality in a population exposed to parasite infection.

Woolhouse ME, Thumbi SM, Jennings A, Chase-Topping M, Callaby R, Kiara H, Oosthuizen MC, Mbole-Kariuki MN, Conradie I, Handel IG, Poole EJ, Njiiri E, Collins NE, Murray G, Tapio M, Auguet OT, Weir W, Morrison WI, Kruuk LE, Bronsvoort BM, Hanotte O, Coetzer K, Toye PG.

Sci Adv. 2015 Mar 20;1(2):e1400026. doi: 10.1126/sciadv.1400026. eCollection 2015 Mar.

28.

Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025.

Bruford MW, Ginja C, Hoffmann I, Joost S, Orozco-terWengel P, Alberto FJ, Amaral AJ, Barbato M, Biscarini F, Colli L, Costa M, Curik I, Duruz S, Ferenčaković M, Fischer D, Fitak R, Groeneveld LF, Hall SJ, Hanotte O, Hassan FU, Helsen P, Iacolina L, Kantanen J, Leempoel K, Lenstra JA, Ajmone-Marsan P, Masembe C, Megens HJ, Miele M, Neuditschko M, Nicolazzi EL, Pompanon F, Roosen J, Sevane N, Smetko A, Štambuk A, Streeter I, Stucki S, Supakorn C, Telo Da Gama L, Tixier-Boichard M, Wegmann D, Zhan X.

Front Genet. 2015 Oct 21;6:314. doi: 10.3389/fgene.2015.00314. eCollection 2015.

29.

Genetic resistance: tolerance to vector-borne diseases and the prospects and challenges of genomics.

Bahbahani H, Hanotte O.

Rev Sci Tech. 2015 Apr;34(1):185-97. Review.

PMID:
26470457
30.

Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken.

Wragg D, Mason AS, Yu L, Kuo R, Lawal RA, Desta TT, Mwacharo JM, Cho CY, Kemp S, Burt DW, Hanotte O.

BMC Genomics. 2015 Oct 14;16:784. doi: 10.1186/s12864-015-1954-x.

31.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.

32.

Multi-locus genotyping reveals absence of genetic structure in field populations of the brown ear tick (Rhipicephalus appendiculatus) in Kenya.

Kanduma EG, Mwacharo JM, Mwaura S, Njuguna JN, Nzuki I, Kinyanjui PW, Githaka N, Heyne H, Hanotte O, Skilton RA, Bishop RP.

Ticks Tick Borne Dis. 2016 Feb;7(1):26-35. doi: 10.1016/j.ttbdis.2015.08.001. Epub 2015 Aug 5.

PMID:
26278352
33.

Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis.

Bahbahani H, Clifford H, Wragg D, Mbole-Kariuki MN, Van Tassell C, Sonstegard T, Woolhouse M, Hanotte O.

Sci Rep. 2015 Jul 1;5:11729. doi: 10.1038/srep11729.

34.

African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World.

Mwai O, Hanotte O, Kwon YJ, Cho S.

Asian-Australas J Anim Sci. 2015 Jul;28(7):911-21. doi: 10.5713/ajas.15.0002R.

35.

Trypanosomosis: potential driver of selection in African cattle.

Smetko A, Soudre A, Silbermayr K, Müller S, Brem G, Hanotte O, Boettcher PJ, Stella A, Mészáros G, Wurzinger M, Curik I, Müller M, Burgstaller J, Sölkner J.

Front Genet. 2015 Apr 21;6:137. doi: 10.3389/fgene.2015.00137. eCollection 2015.

36.

Questioning new answers regarding Holocene chicken domestication in China.

Peters J, Lebrasseur O, Best J, Miller H, Fothergill T, Dobney K, Thomas RM, Maltby M, Sykes N, Hanotte O, O'Connor T, Collins MJ, Larson G.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):E2415. doi: 10.1073/pnas.1503579112. Epub 2015 Apr 17. No abstract available.

37.

Identification of novel loci associated with gastrointestinal parasite resistance in a Red Maasai x Dorper backcross population.

Benavides MV, Sonstegard TS, Kemp S, Mugambi JM, Gibson JP, Baker RL, Hanotte O, Marshall K, Van Tassell C.

PLoS One. 2015 Apr 13;10(4):e0122797. doi: 10.1371/journal.pone.0122797. eCollection 2015.

38.

The epidemiology of tick-borne haemoparasites as determined by the reverse line blot hybridization assay in an intensively studied cohort of calves in western Kenya.

Njiiri NE, Bronsvoort BM, Collins NE, Steyn HC, Troskie M, Vorster I, Thumbi SM, Sibeko KP, Jennings A, van Wyk IC, Mbole-Kariuki M, Kiara H, Poole EJ, Hanotte O, Coetzer K, Oosthuizen MC, Woolhouse M, Toye P.

Vet Parasitol. 2015 May 30;210(1-2):69-76. doi: 10.1016/j.vetpar.2015.02.020. Epub 2015 Mar 16.

39.

Historical demographic profiles and genetic variation of the East African Butana and Kenana indigenous dairy zebu cattle.

Salim B, Taha KM, Hanotte O, Mwacharo JM.

Anim Genet. 2014 Dec;45(6):782-90. doi: 10.1111/age.12225. Epub 2014 Oct 13.

PMID:
25308478
40.

Variation and covariation in strongyle infection in East African shorthorn zebu calves.

Callaby R, Hanotte O, Conradie Van Wyk I, Kiara H, Toye P, Mbole-Kariuki MN, Jennings A, Thumbi SM, Coetzer JA, de C Bronsvoort BM, Knott SA, Woolhouse ME, Kruuk LE.

Parasitology. 2015 Mar;142(3):499-511. doi: 10.1017/S0031182014001498. Epub 2014 Sep 26.

41.

Infection-interactions in Ethiopian village chickens.

Bettridge JM, Lynch SE, Brena MC, Melese K, Dessie T, Terfa ZG, Desta TT, Rushton S, Hanotte O, Kaiser P, Wigley P, Christley RM.

Prev Vet Med. 2014 Nov 15;117(2):358-66. doi: 10.1016/j.prevetmed.2014.07.002. Epub 2014 Jul 12.

42.

A longitudinal assessment of the serological response to Theileria parva and other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya.

Kiara H, Jennings A, Bronsvoort BM, Handel IG, Mwangi ST, Mbole-Kariuki M, Van Wyk IC, Poole EJ, Hanotte O, Coetzer JA, Woolhouse ME, Toye PG.

Parasitology. 2014 Sep;141(10):1289-98. doi: 10.1017/S003118201400050X. Epub 2014 May 16.

43.

Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya.

Mbole-Kariuki MN, Sonstegard T, Orth A, Thumbi SM, Bronsvoort BM, Kiara H, Toye P, Conradie I, Jennings A, Coetzer K, Woolhouse ME, Hanotte O, Tapio M.

Heredity (Edinb). 2014 Oct;113(4):297-305. doi: 10.1038/hdy.2014.31. Epub 2014 Apr 16.

44.

Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.

Decker JE, McKay SD, Rolf MM, Kim J, Molina Alcalá A, Sonstegard TS, Hanotte O, Götherström A, Seabury CM, Praharani L, Babar ME, Correia de Almeida Regitano L, Yildiz MA, Heaton MP, Liu WS, Lei CZ, Reecy JM, Saif-Ur-Rehman M, Schnabel RD, Taylor JF.

PLoS Genet. 2014 Mar 27;10(3):e1004254. doi: 10.1371/journal.pgen.1004254. eCollection 2014 Mar.

45.

Parasite co-infections and their impact on survival of indigenous cattle.

Thumbi SM, Bronsvoort BM, Poole EJ, Kiara H, Toye PG, Mbole-Kariuki MN, Conradie I, Jennings A, Handel IG, Coetzer JA, Steyl JC, Hanotte O, Woolhouse ME.

PLoS One. 2014 Feb 20;9(2):e76324. doi: 10.1371/journal.pone.0076324. eCollection 2014.

46.

The impact of co-infections on the haematological profile of East African Short-horn Zebu calves.

Van Wyk IC, Goddard A, de C Bronsvoort BM, Coetzer JA, Handel IG, Hanotte O, Jennings A, Lesosky M, Kiara H, Thumbi SM, Toye P, Woolhouse MW, Penzhorn BL.

Parasitology. 2014 Mar;141(3):374-88. doi: 10.1017/S0031182013001625.

47.

Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression.

Murray GG, Woolhouse ME, Tapio M, Mbole-Kariuki MN, Sonstegard TS, Thumbi SM, Jennings AE, van Wyk IC, Chase-Topping M, Kiara H, Toye P, Coetzer K, deC Bronsvoort BM, Hanotte O.

BMC Evol Biol. 2013 Nov 9;13:246. doi: 10.1186/1471-2148-13-246.

48.

Prevalence and molecular characterisation of Eimeria species in Ethiopian village chickens.

Luu L, Bettridge J, Christley RM, Melese K, Blake D, Dessie T, Wigley P, Desta TT, Hanotte O, Kaiser P, Terfa ZG, Collins M, Lynch SE.

BMC Vet Res. 2013 Oct 15;9:208. doi: 10.1186/1746-6148-9-208.

49.

Mortality in East African shorthorn zebu cattle under one year: predictors of infectious-disease mortality.

Thumbi SM, Bronsvoort MB, Kiara H, Toye PG, Poole J, Ndila M, Conradie I, Jennings A, Handel IG, Coetzer JA, Steyl J, Hanotte O, Woolhouse ME.

BMC Vet Res. 2013 Sep 8;9:175. doi: 10.1186/1746-6148-9-175.

50.

Parasite co-infections show synergistic and antagonistic interactions on growth performance of East African zebu cattle under one year.

Thumbi SM, de C Bronsvoort BM, Poole EJ, Kiara H, Toye P, Ndila M, Conradie I, Jennings A, Handel IG, Coetzer JA, Hanotte O, Woolhouse ME.

Parasitology. 2013 Dec;140(14):1789-98. doi: 10.1017/S0031182013001261. Epub 2013 Sep 4.

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