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Geminiviral V2 Protein Suppresses Transcriptional Gene Silencing through Interaction with AGO4.

Wang Y, Wu Y, Gong Q, Ismayil A, Yuan Y, Lian B, Jia Q, Han M, Deng H, Hong Y, Hanley-Bowdoin L, Qi Y, Liu Y.

J Virol. 2019 Mar 5;93(6). pii: e01675-18. doi: 10.1128/JVI.01675-18. Print 2019 Mar 15.


Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L).

Turpin ZM, Vera DL, Savadel SD, Lung PY, Wear EE, Mickelson-Young L, Thompson WF, Hanley-Bowdoin L, Dennis JH, Zhang J, Bass HW.

Data Brief. 2018 Aug 10;20:358-363. doi: 10.1016/j.dib.2018.08.015. eCollection 2018 Oct.


Cotton Leaf Curl Multan virus C4 protein suppresses both transcriptional and post-transcriptional gene silencing by interacting with SAM synthetase.

Ismayil A, Haxim Y, Wang Y, Li H, Qian L, Han T, Chen T, Jia Q, Yihao Liu A, Zhu S, Deng H, Gorovits R, Hong Y, Hanley-Bowdoin L, Liu Y.

PLoS Pathog. 2018 Aug 29;14(8):e1007282. doi: 10.1371/journal.ppat.1007282. eCollection 2018 Aug.


Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection.

Shen W, Bobay BG, Greeley LA, Reyes MI, Rajabu CA, Blackburn RK, Dallas MB, Goshe MB, Ascencio-Ibáñez JT, Hanley-Bowdoin L.

Plant Physiol. 2018 Sep;178(1):372-389. doi: 10.1104/pp.18.00268. Epub 2018 Jul 13.


Diacylglycerol acyltransferase 1 is activated by phosphatidate and inhibited by SnRK1-catalyzed phosphorylation.

Caldo KMP, Shen W, Xu Y, Hanley-Bowdoin L, Chen G, Weselake RJ, Lemieux MJ.

Plant J. 2018 Oct;96(2):287-299. doi: 10.1111/tpj.14029. Epub 2018 Aug 24.


Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses.

Rajabu CA, Kennedy GG, Ndunguru J, Ateka EM, Tairo F, Hanley-Bowdoin L, Ascencio-Ibáñez JT.

J Virol Methods. 2018 Jun;256:89-99. doi: 10.1016/j.jviromet.2018.03.002. Epub 2018 Mar 9.


Genome-Wide Analysis of the Arabidopsis Replication Timing Program.

Concia L, Brooks AM, Wheeler E, Zynda GJ, Wear EE, LeBlanc C, Song J, Lee TJ, Pascuzzi PE, Martienssen RA, Vaughn MW, Thompson WF, Hanley-Bowdoin L.

Plant Physiol. 2018 Mar;176(3):2166-2185. doi: 10.1104/pp.17.01537. Epub 2018 Jan 4.


A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae.

Reyes MI, Flores-Vergara MA, Guerra-Peraza O, Rajabu C, Desai J, Hiromoto-Ruiz YH, Ndunguru J, Hanley-Bowdoin L, Kjemtrup S, Ascencio-Ibáñez JT, Robertson D.

Plant J. 2017 Dec;92(5):796-807. doi: 10.1111/tpj.13716. Epub 2017 Oct 24.


Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips.

Wear EE, Song J, Zynda GJ, LeBlanc C, Lee TJ, Mickelson-Young L, Concia L, Mulvaney P, Szymanski ES, Allen GC, Martienssen RA, Vaughn MW, Hanley-Bowdoin L, Thompson WF.

Plant Cell. 2017 Sep;29(9):2126-2149. doi: 10.1105/tpc.17.00037. Epub 2017 Aug 25.


Repliscan: a tool for classifying replication timing regions.

Zynda GJ, Song J, Concia L, Wear EE, Hanley-Bowdoin L, Thompson WF, Vaughn MW.

BMC Bioinformatics. 2017 Aug 7;18(1):362. doi: 10.1186/s12859-017-1774-x.


Foundational and Translational Research Opportunities to Improve Plant Health.

Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-van den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, Harvey J, He P, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J.

Mol Plant Microbe Interact. 2017 Jul;30(7):515-516. doi: 10.1094/MPMI-01-17-0010-CR. Epub 2017 Jun 12.


A flow cytometric method for estimating S-phase duration in plants.

Mickelson-Young L, Wear E, Mulvaney P, Lee TJ, Szymanski ES, Allen G, Hanley-Bowdoin L, Thompson W.

J Exp Bot. 2016 Nov;67(21):6077-6087. Epub 2016 Oct 3.


Two Novel DNAs That Enhance Symptoms and Overcome CMD2 Resistance to Cassava Mosaic Disease.

Ndunguru J, De León L, Doyle CD, Sseruwagi P, Plata G, Legg JP, Thompson G, Tohme J, Aveling T, Ascencio-Ibáñez JT, Hanley-Bowdoin L.

J Virol. 2016 Mar 28;90(8):4160-4173. doi: 10.1128/JVI.02834-15. Print 2016 Apr.


Isolation of Plant Nuclei at Defined Cell Cycle Stages Using EdU Labeling and Flow Cytometry.

Wear EE, Concia L, Brooks AM, Markham EA, Lee TJ, Allen GC, Thompson WF, Hanley-Bowdoin L.

Methods Mol Biol. 2016;1370:69-86. doi: 10.1007/978-1-4939-3142-2_6.


Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei.

Bass HW, Hoffman GG, Lee TJ, Wear EE, Joseph SR, Allen GC, Hanley-Bowdoin L, Thompson WF.

Plant Mol Biol. 2015 Nov;89(4-5):339-51. doi: 10.1007/s11103-015-0364-4. Epub 2015 Sep 22.


SnRK1 phosphorylation of AL2 delays Cabbage leaf curl virus infection in Arabidopsis.

Shen W, Dallas MB, Goshe MB, Hanley-Bowdoin L.

J Virol. 2014 Sep;88(18):10598-612. doi: 10.1128/JVI.00761-14. Epub 2014 Jul 2.


In vivo mapping of arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly(dA:dT) tracts.

Pascuzzi PE, Flores-Vergara MA, Lee TJ, Sosinski B, Vaughn MW, Hanley-Bowdoin L, Thompson WF, Allen GC.

Plant Cell. 2014 Jan;26(1):102-20. doi: 10.1105/tpc.113.121194. Epub 2014 Jan 31.


A maize root tip system to study DNA replication programmes in somatic and endocycling nuclei during plant development.

Bass HW, Wear EE, Lee TJ, Hoffman GG, Gumber HK, Allen GC, Thompson WF, Hanley-Bowdoin L.

J Exp Bot. 2014 Jun;65(10):2747-56. doi: 10.1093/jxb/ert470. Epub 2014 Jan 21. Review.


Geminiviruses: masters at redirecting and reprogramming plant processes.

Hanley-Bowdoin L, Bejarano ER, Robertson D, Mansoor S.

Nat Rev Microbiol. 2013 Nov;11(11):777-88. doi: 10.1038/nrmicro3117. Epub 2013 Oct 8. Review.


Peptide aptamers that bind to geminivirus replication proteins confer a resistance phenotype to tomato yellow leaf curl virus and tomato mottle virus infection in tomato.

Reyes MI, Nash TE, Dallas MM, Ascencio-Ibáñez JT, Hanley-Bowdoin L.

J Virol. 2013 Sep;87(17):9691-706. doi: 10.1128/JVI.01095-13. Epub 2013 Jul 3.


Tomato SlSnRK1 protein interacts with and phosphorylates βC1, a pathogenesis protein encoded by a geminivirus β-satellite.

Shen Q, Liu Z, Song F, Xie Q, Hanley-Bowdoin L, Zhou X.

Plant Physiol. 2011 Nov;157(3):1394-406. doi: 10.1104/pp.111.184648. Epub 2011 Sep 1.


Interaction between geminivirus replication protein and the SUMO-conjugating enzyme is required for viral infection.

Sánchez-Durán MA, Dallas MB, Ascencio-Ibañez JT, Reyes MI, Arroyo-Mateos M, Ruiz-Albert J, Hanley-Bowdoin L, Bejarano ER.

J Virol. 2011 Oct;85(19):9789-800. doi: 10.1128/JVI.02566-10. Epub 2011 Jul 20.


Functional analysis of a novel motif conserved across geminivirus Rep proteins.

Nash TE, Dallas MB, Reyes MI, Buhrman GK, Ascencio-Ibañez JT, Hanley-Bowdoin L.

J Virol. 2011 Feb;85(3):1182-92. doi: 10.1128/JVI.02143-10. Epub 2010 Nov 17.


Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

Lee TJ, Pascuzzi PE, Settlage SB, Shultz RW, Tanurdzic M, Rabinowicz PD, Menges M, Zheng P, Main D, Murray JA, Sosinski B, Allen GC, Martienssen RA, Hanley-Bowdoin L, Vaughn MW, Thompson WF.

PLoS Genet. 2010 Jun 10;6(6):e1000982. doi: 10.1371/journal.pgen.1000982.


The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis.

Sozzani R, Maggio C, Giordo R, Umana E, Ascencio-Ibañez JT, Hanley-Bowdoin L, Bergounioux C, Cella R, Albani D.

Plant Mol Biol. 2010 Mar;72(4-5):381-95. doi: 10.1007/s11103-009-9577-8. Epub 2009 Nov 25.


Isolation of Peptide aptamers to target protein function.

Lopez-Ochoa L, Nash TE, Ramirez-Prado J, Hanley-Bowdoin L.

Methods Mol Biol. 2009;535:333-60. doi: 10.1007/978-1-59745-557-2_19.


Dynamic localization of the DNA replication proteins MCM5 and MCM7 in plants.

Shultz RW, Lee TJ, Allen GC, Thompson WF, Hanley-Bowdoin L.

Plant Physiol. 2009 Jun;150(2):658-69. doi: 10.1104/pp.109.136614. Epub 2009 Apr 8.


Arabidopsis protein kinases GRIK1 and GRIK2 specifically activate SnRK1 by phosphorylating its activation loop.

Shen W, Reyes MI, Hanley-Bowdoin L.

Plant Physiol. 2009 Jun;150(2):996-1005. doi: 10.1104/pp.108.132787. Epub 2009 Apr 1.


Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.

Ascencio-Ibáñez JT, Sozzani R, Lee TJ, Chu TM, Wolfinger RD, Cella R, Hanley-Bowdoin L.

Plant Physiol. 2008 Sep;148(1):436-54. doi: 10.1104/pp.108.121038. Epub 2008 Jul 23.


High-frequency reversion of geminivirus replication protein mutants during infection.

Arguello-Astorga G, Ascencio-Ibáñez JT, Dallas MB, Orozco BM, Hanley-Bowdoin L.

J Virol. 2007 Oct;81(20):11005-15. Epub 2007 Aug 1.


Geminivirus-induced gene silencing of the tobacco retinoblastoma-related gene results in cell death and altered development.

Jordan CV, Shen W, Hanley-Bowdoin LK, Robertson DN.

Plant Mol Biol. 2007 Sep;65(1-2):163-75. Epub 2007 Jul 17.


Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice.

Shultz RW, Tatineni VM, Hanley-Bowdoin L, Thompson WF.

Plant Physiol. 2007 Aug;144(4):1697-714. Epub 2007 Jun 7.


Peptide aptamers that bind to a geminivirus replication protein interfere with viral replication in plant cells.

Lopez-Ochoa L, Ramirez-Prado J, Hanley-Bowdoin L.

J Virol. 2006 Jun;80(12):5841-53.


Geminivirus C3 protein: replication enhancement and protein interactions.

Settlage SB, See RG, Hanley-Bowdoin L.

J Virol. 2005 Aug;79(15):9885-95.


A novel motif in geminivirus replication proteins interacts with the plant retinoblastoma-related protein.

Arguello-Astorga G, Lopez-Ochoa L, Kong LJ, Orozco BM, Settlage SB, Hanley-Bowdoin L.

J Virol. 2004 May;78(9):4817-26.


Interaction between a geminivirus replication protein and the plant sumoylation system.

Castillo AG, Kong LJ, Hanley-Bowdoin L, Bejarano ER.

J Virol. 2004 Mar;78(6):2758-69.


Reprogramming plant gene expression: a prerequisite to geminivirus DNA replication.

Hanley-Bowdoin L, Settlage SB, Robertson D.

Mol Plant Pathol. 2004 Mar 1;5(2):149-56. doi: 10.1111/j.1364-3703.2004.00214.x.


Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development.

Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L.

Plant Cell. 2002 Dec;14(12):3225-36.


Host DNA replication is induced by geminivirus infection of differentiated plant cells.

Nagar S, Hanley-Bowdoin L, Robertson D.

Plant Cell. 2002 Dec;14(12):2995-3007.


Silencing of a meristematic gene using geminivirus-derived vectors.

Peele C, Jordan CV, Muangsan N, Turnage M, Egelkrout E, Eagle P, Hanley-Bowdoin L, Robertson D.

Plant J. 2001 Aug;27(4):357-66.


A geminivirus replication protein interacts with the retinoblastoma protein through a novel domain to determine symptoms and tissue specificity of infection in plants.

Kong LJ, Orozco BM, Roe JL, Nagar S, Ou S, Feiler HS, Durfee T, Miller AB, Gruissem W, Robertson D, Hanley-Bowdoin L.

EMBO J. 2000 Jul 3;19(13):3485-95.


Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation.

Hanley-Bowdoin L, Settlage SB, Orozco BM, Nagar S, Robertson D.

Crit Rev Biochem Mol Biol. 2000;35(2):105-40. Review.


Chromosome condensation induced by geminivirus infection of mature plant cells.

Bass HW, Nagar S, Hanley-Bowdoin L, Robertson D.

J Cell Sci. 2000 Apr;113 ( Pt 7):1149-60.


The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties.

Orozco BM, Kong LJ, Batts LA, Elledge S, Hanley-Bowdoin L.

J Biol Chem. 2000 Mar 3;275(9):6114-22.


Multiple cis elements contribute to geminivirus origin function.

Orozco BM, Gladfelter HJ, Settlage SB, Eagle PA, Gentry RN, Hanley-Bowdoin L.

Virology. 1998 Mar 15;242(2):346-56.

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