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Items: 1 to 50 of 149

1.

A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera).

Schmidt H, Hellmann SL, Waldvogel AM, Feldmeyer B, Hankeln T, Pfenninger M.

G3 (Bethesda). 2020 Feb 14. pii: g3.400710.2019. doi: 10.1534/g3.119.400710. [Epub ahead of print]

2.

The Antioxidative Role of Cytoglobin in Podocytes: Implications for a Role in Chronic Kidney Disease.

Randi EB, Vervaet B, Tsachaki M, Porto E, Vermeylen S, Lindenmeyer MT, Thuy LTT, Cohen CD, Devuyst O, Kistler AD, Szabo C, Kawada N, Hankeln T, Odermatt A, Dewilde S, Wenger RH, Hoogewijs D.

Antioxid Redox Signal. 2020 Feb 6. doi: 10.1089/ars.2019.7868. [Epub ahead of print]

PMID:
31910047
3.

The role of myoglobin in epithelial cancers: Insights from transcriptomics.

Bicker A, Nauth T, Gerst D, Aboouf MA, Fandrey J, Kristiansen G, Gorr TA, Hankeln T.

Int J Mol Med. 2020 Feb;45(2):385-400. doi: 10.3892/ijmm.2019.4433. Epub 2019 Dec 18.

4.

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria.

Philippe H, Poustka AJ, Chiodin M, Hoff KJ, Dessimoz C, Tomiczek B, Schiffer PH, Müller S, Domman D, Horn M, Kuhl H, Timmermann B, Satoh N, Hikosaka-Katayama T, Nakano H, Rowe ML, Elphick MR, Thomas-Chollier M, Hankeln T, Mertes F, Wallberg A, Rast JP, Copley RR, Martinez P, Telford MJ.

Curr Biol. 2019 Jun 3;29(11):1818-1826.e6. doi: 10.1016/j.cub.2019.04.009. Epub 2019 May 16.

PMID:
31104936
5.

The genomic footprint of climate adaptation in Chironomus riparius.

Waldvogel AM, Wieser A, Schell T, Patel S, Schmidt H, Hankeln T, Feldmeyer B, Pfenninger M.

Mol Ecol. 2018 Mar;27(6):1439-1456. doi: 10.1111/mec.14543. Epub 2018 Mar 23.

PMID:
29473242
6.

Loss of Neuroglobin Expression Alters Cdkn1a/Cdk6-Expression Resulting in Increased Proliferation of Neural Stem Cells.

Luyckx E, Van Leuven W, Andre D, Quarta A, Reekmans K, Fransen E, Moens L, Hankeln T, Ponsaerts P, Dewilde S.

Stem Cells Dev. 2018 Mar 15;27(6):378-390. doi: 10.1089/scd.2017.0097. Epub 2018 Feb 27.

PMID:
29357734
7.

De novo Transcriptome Assembly and Comparison of C3, C3-C4, and C4 Species of Tribe Salsoleae (Chenopodiaceae).

Lauterbach M, Schmidt H, Billakurthi K, Hankeln T, Westhoff P, Gowik U, Kadereit G.

Front Plant Sci. 2017 Nov 14;8:1939. doi: 10.3389/fpls.2017.01939. eCollection 2017.

8.

Hypoxia tolerance, longevity and cancer-resistance in the mole rat Spalax - a liver transcriptomics approach.

Schmidt H, Malik A, Bicker A, Poetzsch G, Avivi A, Shams I, Hankeln T.

Sci Rep. 2017 Oct 30;7(1):14348. doi: 10.1038/s41598-017-13905-z.

9.

Hearing Without Neuroglobin.

Nowotny M, Kiefer L, Andre D, Fabrizius A, Hankeln T, Reuss S.

Neuroscience. 2017 Dec 16;366:138-148. doi: 10.1016/j.neuroscience.2017.10.010. Epub 2017 Oct 13.

PMID:
29031607
10.

MetaCache: context-aware classification of metagenomic reads using minhashing.

Müller A, Hundt C, Hildebrandt A, Hankeln T, Schmidt B.

Bioinformatics. 2017 Dec 1;33(23):3740-3748. doi: 10.1093/bioinformatics/btx520.

PMID:
28961782
11.

Divergent roles of the Drosophila melanogaster globins.

Burmester T, Wawrowski A, Diepenbruck I, Schrick K, Seiwert N, Ripp F, Prothmann A, Hankeln T.

J Insect Physiol. 2018 Apr;106(Pt 3):224-231. doi: 10.1016/j.jinsphys.2017.06.003. Epub 2017 Jun 9.

PMID:
28606854
12.

AFS: identification and quantification of species composition by metagenomic sequencing.

Liu Y, Ripp F, Koeppel R, Schmidt H, Hellmann SL, Weber M, Krombholz CF, Schmidt B, Hankeln T.

Bioinformatics. 2017 May 1;33(9):1396-1398. doi: 10.1093/bioinformatics/btw822.

PMID:
28453677
13.

HLA class I loss in metachronous metastases prevents continuous T cell recognition of mutated neoantigens in a human melanoma model.

Schrörs B, Lübcke S, Lennerz V, Fatho M, Bicker A, Wölfel C, Derigs P, Hankeln T, Schadendorf D, Paschen A, Wölfel T.

Oncotarget. 2017 Apr 25;8(17):28312-28327. doi: 10.18632/oncotarget.16048.

14.

Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence.

Oppold AM, Schmidt H, Rose M, Hellmann SL, Dolze F, Ripp F, Weich B, Schmidt-Ott U, Schmidt E, Kofler R, Hankeln T, Pfenninger M.

Mol Ecol. 2017 Jun;26(12):3256-3275. doi: 10.1111/mec.14111. Epub 2017 Apr 12.

PMID:
28316106
15.

Ectopic Myoglobin Expression Is Associated with a Favourable Outcome in Head and Neck Squamous Cell Carcinoma Patients.

Meller S, VAN Ellen A, Gevensleben H, Bicker A, Hankeln T, Gorr TA, Sailer V, Dröge F, Schröck F, Bootz F, Schröck A, Perner S, Dietrich D, Kristiansen G.

Anticancer Res. 2016 Dec;36(12):6235-6241.

PMID:
27919941
16.

Critical re-evaluation of neuroglobin expression reveals conserved patterns among mammals.

Fabrizius A, Andre D, Laufs T, Bicker A, Reuss S, Porto E, Burmester T, Hankeln T.

Neuroscience. 2016 Nov 19;337:339-354. doi: 10.1016/j.neuroscience.2016.07.042. Epub 2016 Aug 16.

PMID:
27542528
17.

Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data.

Liu Y, Hankeln T, Schmidt B.

IEEE/ACM Trans Comput Biol Bioinform. 2016 May-Jun;13(3):592-8. doi: 10.1109/TCBB.2015.2430314.

PMID:
27295644
18.

Distribution of Cytoglobin in the Mouse Brain.

Reuss S, Wystub S, Disque-Kaiser U, Hankeln T, Burmester T.

Front Neuroanat. 2016 Apr 27;10:47. doi: 10.3389/fnana.2016.00047. eCollection 2016.

19.

Knockdown of Drosophila hemoglobin suggests a role in O2 homeostasis.

Gleixner E, Ripp F, Gorr TA, Schuh R, Wolf C, Burmester T, Hankeln T.

Insect Biochem Mol Biol. 2016 May;72:20-30. doi: 10.1016/j.ibmb.2016.03.004. Epub 2016 Mar 18.

PMID:
27001071
20.

Isolation of Microsatellite Loci by Next-Generation Sequencing of the Critically Endangered Northern Bald Ibis, Geronticus eremita.

Wirtz S, Böhm C, Fritz J, Hankeln T, Hochkirch A.

J Hered. 2016 Jul;107(4):363-6. doi: 10.1093/jhered/esw013. Epub 2016 Mar 4.

21.

Phylogeny of Syndermata (syn. Rotifera): Mitochondrial gene order verifies epizoic Seisonidea as sister to endoparasitic Acanthocephala within monophyletic Hemirotifera.

Sielaff M, Schmidt H, Struck TH, Rosenkranz D, Mark Welch DB, Hankeln T, Herlyn H.

Mol Phylogenet Evol. 2016 Mar;96:79-92. doi: 10.1016/j.ympev.2015.11.017. Epub 2015 Dec 15.

PMID:
26702959
22.

Molecular evolution of antioxidant and hypoxia response in long-lived, cancer-resistant blind mole rats: The Nrf2-Keap1 pathway.

Schmidt H, Hangmann J, Shams I, Avivi A, Hankeln T.

Gene. 2016 Feb 15;577(2):293-8. doi: 10.1016/j.gene.2015.11.038. Epub 2015 Nov 26.

PMID:
26631622
23.

The Distinct Gene Regulatory Network of Myoglobin in Prostate and Breast Cancer.

Bicker A, Brahmer AM, Meller S, Kristiansen G, Gorr TA, Hankeln T.

PLoS One. 2015 Nov 11;10(11):e0142662. doi: 10.1371/journal.pone.0142662. eCollection 2015.

24.

Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J.

Nat Commun. 2015 Aug 12;6:8051. doi: 10.1038/ncomms9051. No abstract available.

PMID:
26264976
25.

Neuroglobin Expression in the Mammalian Auditory System.

Reuss S, Banica O, Elgurt M, Mitz S, Disque-Kaiser U, Riemann R, Hill M, Jaquish DV, Koehrn FJ, Burmester T, Hankeln T, Woolf NK.

Mol Neurobiol. 2016 Apr;53(3):1461-1477. doi: 10.1007/s12035-014-9082-1. Epub 2015 Jan 31.

26.

Myoglobin expression in prostate cancer is correlated to androgen receptor expression and markers of tumor hypoxia.

Meller S, Bicker A, Montani M, Ikenberg K, Rostamzadeh B, Sailer V, Wild P, Dietrich D, Uhl B, Sulser T, Moch H, Gorr TA, Stephan C, Jung K, Hankeln T, Kristiansen G.

Virchows Arch. 2014 Oct;465(4):419-27. doi: 10.1007/s00428-014-1646-y. Epub 2014 Aug 30.

PMID:
25172328
27.

All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing.

Ripp F, Krombholz CF, Liu Y, Weber M, Schäfer A, Schmidt B, Köppel R, Hankeln T.

BMC Genomics. 2014 Jul 31;15:639. doi: 10.1186/1471-2164-15-639.

28.

The globin gene repertoire of lampreys: convergent evolution of hemoglobin and myoglobin in jawed and jawless vertebrates.

Schwarze K, Campbell KL, Hankeln T, Storz JF, Hoffmann FG, Burmester T.

Mol Biol Evol. 2014 Oct;31(10):2708-21. doi: 10.1093/molbev/msu216. Epub 2014 Jul 23.

29.

Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J.

Nat Commun. 2014 Jun 3;5:3966. doi: 10.1038/ncomms4966. Erratum in: Nat Commun. 2015;6:8051.

PMID:
24892994
30.

Anthropophilic Anopheles species composition and malaria in Tierradentro, Córdoba, Colombia.

Schiemann DJ, Pinzón ML, Hankeln T.

Mem Inst Oswaldo Cruz. 2014 May;109(3):384-387. Epub 2014 May 20.

31.

Function and evolution of vertebrate globins.

Burmester T, Hankeln T.

Acta Physiol (Oxf). 2014 Jul;211(3):501-14. doi: 10.1111/apha.12312. Epub 2014 May 28. Review.

PMID:
24811692
32.

Platyzoan paraphyly based on phylogenomic data supports a noncoelomate ancestry of spiralia.

Struck TH, Wey-Fabrizius AR, Golombek A, Hering L, Weigert A, Bleidorn C, Klebow S, Iakovenko N, Hausdorf B, Petersen M, Kück P, Herlyn H, Hankeln T.

Mol Biol Evol. 2014 Jul;31(7):1833-49. doi: 10.1093/molbev/msu143. Epub 2014 Apr 18.

PMID:
24748651
33.

Transcriptome data reveal Syndermatan relationships and suggest the evolution of endoparasitism in Acanthocephala via an epizoic stage.

Wey-Fabrizius AR, Herlyn H, Rieger B, Rosenkranz D, Witek A, Welch DB, Ebersberger I, Hankeln T.

PLoS One. 2014 Feb 10;9(2):e88618. doi: 10.1371/journal.pone.0088618. eCollection 2014.

34.

Visual search as a tool for a quick and reliable assessment of cognitive functions in patients with multiple sclerosis.

Utz KS, Hankeln TM, Jung L, Lämmer A, Waschbisch A, Lee DH, Linker RA, Schenk T.

PLoS One. 2013 Nov 25;8(11):e81531. doi: 10.1371/journal.pone.0081531. eCollection 2013.

35.

New phylogenomic data support the monophyly of Lophophorata and an Ectoproct-Phoronid clade and indicate that Polyzoa and Kryptrochozoa are caused by systematic bias.

Nesnidal MP, Helmkampf M, Meyer A, Witek A, Bruchhaus I, Ebersberger I, Hankeln T, Lieb B, Struck TH, Hausdorf B.

BMC Evol Biol. 2013 Nov 17;13:253. doi: 10.1186/1471-2148-13-253.

36.

Extensive transcriptional complexity during hypoxia-regulated expression of the myoglobin gene in cancer.

Bicker A, Dietrich D, Gleixner E, Kristiansen G, Gorr TA, Hankeln T.

Hum Mol Genet. 2014 Jan 15;23(2):479-90. doi: 10.1093/hmg/ddt438. Epub 2013 Sep 10.

37.

Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges.

Schmidt H, Greshake B, Feldmeyer B, Hankeln T, Pfenninger M.

BMC Genomics. 2013 Jun 10;14:384. doi: 10.1186/1471-2164-14-384.

38.

Platyzoan mitochondrial genomes.

Wey-Fabrizius AR, Podsiadlowski L, Herlyn H, Hankeln T.

Mol Phylogenet Evol. 2013 Nov;69(2):365-75. doi: 10.1016/j.ympev.2012.12.015. Epub 2012 Dec 26. Review.

PMID:
23274056
39.

Transcriptome analysis of the spalax hypoxia survival response includes suppression of apoptosis and tight control of angiogenesis.

Malik A, Korol A, Weber M, Hankeln T, Avivi A, Band M.

BMC Genomics. 2012 Nov 13;13:615. doi: 10.1186/1471-2164-13-615.

40.

Phylogenetic analyses of endoparasitic Acanthocephala based on mitochondrial genomes suggest secondary loss of sensory organs.

Weber M, Wey-Fabrizius AR, Podsiadlowski L, Witek A, Schill RO, Sugár L, Herlyn H, Hankeln T.

Mol Phylogenet Evol. 2013 Jan;66(1):182-9. doi: 10.1016/j.ympev.2012.09.017. Epub 2012 Oct 5.

PMID:
23044398
41.

Permanent genetic resources added to molecular ecology resources database 1 April 2012 - 31 May 2012.

Molecular Ecology Resources Primer Development Consortium, Abelló P, Ai W, Altmann C, Bernardi G, Bonato O, Burchhardt KM, Chen X, Chen Z, Cížková D, Clouet C, Cubeta MA, Garcia-Merchan VH, Gauthier N, Gibson S, Halačka K, Hamdi F, Hankeln T, Hochkirch A, Hrbek T, Jackson AM, Lin C, Lin SM, Macpherson E, Macrander J, Marešová E, Mendel J, Nowak M, Orti G, Palero F, Papoušek I, Pascual M, Schmitt T, Semmens BX, Streito JC, Tian EW, Tseng SP, Veith M, Vetešník L, Wang HY, Weyer J, Willis S, Yu H, Zhou Z.

Mol Ecol Resour. 2012 Sep;12(5):972-4. doi: 10.1111/j.1755-0998.2012.03173.x. Epub 2012 Aug 1.

PMID:
22898144
42.

Characterization of the hemoglobin of the backswimmer Anisops deanei (Hemiptera).

Wawrowski A, Matthews PG, Gleixner E, Kiger L, Marden MC, Hankeln T, Burmester T.

Insect Biochem Mol Biol. 2012 Sep;42(9):603-9. doi: 10.1016/j.ibmb.2012.04.007. Epub 2012 May 2.

PMID:
22575160
43.

Living with stress: regulation of antioxidant defense genes in the subterranean, hypoxia-tolerant mole rat, Spalax.

Schülke S, Dreidax D, Malik A, Burmester T, Nevo E, Band M, Avivi A, Hankeln T.

Gene. 2012 Jun 1;500(2):199-206. doi: 10.1016/j.gene.2012.03.019. Epub 2012 Mar 13. Erratum in: Gene. 2014 Mar 1;537(1):176.

PMID:
22441129
44.

Testes-specific hemoglobins in Drosophila evolved by a combination of sub- and neofunctionalization after gene duplication.

Gleixner E, Herlyn H, Zimmerling S, Burmester T, Hankeln T.

BMC Evol Biol. 2012 Mar 19;12:34. doi: 10.1186/1471-2148-12-34.

45.

Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition.

Hoffmann FG, Opazo JC, Hoogewijs D, Hankeln T, Ebner B, Vinogradov SN, Bailly X, Storz JF.

Mol Biol Evol. 2012 Jul;29(7):1735-45. doi: 10.1093/molbev/mss018. Epub 2012 Jan 24.

46.

Permanent genetic resources added to Molecular Ecology Resources Database 1 October 2011-30 November 2011.

Molecular Ecology Resources Primer Development Consortium, Abreu AG, Albaina A, Alpermann TJ, Apkenas VE, Bankhead-Dronnet S, Bergek S, Berumen ML, Cho CH, Clobert J, Coulon A, DE Feraudy D, Estonba A, Hankeln T, Hochkirch A, Hsu TW, Huang TJ, Irigoien X, Iriondo M, Kay KM, Kinitz T, Kothera L, LE Hénanff M, Lieutier F, Lourdais O, Macrini CM, Manzano C, Martin C, Morris VR, Nanninga G, Pardo MA, Plieske J, Pointeau S, Prestegaard T, Quack M, Richard M, Savage HM, Schwarcz KD, Shade J, Simms EL, Solferini VN, Stevens VM, Veith M, Wen MJ, Wicker F, Yost JM, Zarraonaindia I.

Mol Ecol Resour. 2012 Mar;12(2):374-6. doi: 10.1111/j.1755-0998.2011.03109.x. Epub 2012 Feb 1.

47.

Androglobin: a chimeric globin in metazoans that is preferentially expressed in Mammalian testes.

Hoogewijs D, Ebner B, Germani F, Hoffmann FG, Fabrizius A, Moens L, Burmester T, Dewilde S, Storz JF, Vinogradov SN, Hankeln T.

Mol Biol Evol. 2012 Apr;29(4):1105-14. doi: 10.1093/molbev/msr246. Epub 2011 Nov 24.

48.

A membrane-bound vertebrate globin.

Blank M, Wollberg J, Gerlach F, Reimann K, Roesner A, Hankeln T, Fago A, Weber RE, Burmester T.

PLoS One. 2011;6(9):e25292. doi: 10.1371/journal.pone.0025292. Epub 2011 Sep 20.

49.

Endogenous myoglobin in breast cancer is hypoxia-inducible by alternative transcription and functions to impair mitochondrial activity: a role in tumor suppression?

Kristiansen G, Hu J, Wichmann D, Stiehl DP, Rose M, Gerhardt J, Bohnert A, ten Haaf A, Moch H, Raleigh J, Varia MA, Subarsky P, Scandurra FM, Gnaiger E, Gleixner E, Bicker A, Gassmann M, Hankeln T, Dahl E, Gorr TA.

J Biol Chem. 2011 Dec 16;286(50):43417-28. doi: 10.1074/jbc.M111.227553. Epub 2011 Sep 19.

50.

Oxygen supply from the bird's eye perspective: globin E is a respiratory protein in the chicken retina.

Blank M, Kiger L, Thielebein A, Gerlach F, Hankeln T, Marden MC, Burmester T.

J Biol Chem. 2011 Jul 29;286(30):26507-15. doi: 10.1074/jbc.M111.224634. Epub 2011 May 27.

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