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Items: 45

1.

Silent but deadly: IS200 promotes pathogenicity in Salmonella Typhimurium.

Ellis MJ, Carfrae LA, Macnair CR, Trussler RS, Brown ED, Haniford DB.

RNA Biol. 2018 Feb 1;15(2):176-181. doi: 10.1080/15476286.2017.1403001. Epub 2017 Dec 8.

PMID:
29120256
2.

Evolving Mistranslating tRNAs Through a Phenotypically Ambivalent Intermediate in Saccharomyces cerevisiae.

Berg MD, Hoffman KS, Genereaux J, Mian S, Trussler RS, Haniford DB, O'Donoghue P, Brandl CJ.

Genetics. 2017 Aug;206(4):1865-1879. doi: 10.1534/genetics.117.203232. Epub 2017 Jun 2.

3.

A transposon-derived small RNA regulates gene expression in Salmonella Typhimurium.

Ellis MJ, Trussler RS, Charles O, Haniford DB.

Nucleic Acids Res. 2017 May 19;45(9):5470-5486. doi: 10.1093/nar/gkx094.

4.

Riboregulation of bacterial and archaeal transposition.

Ellis MJ, Haniford DB.

Wiley Interdiscip Rev RNA. 2016 May;7(3):382-98. doi: 10.1002/wrna.1341. Epub 2016 Feb 4. Review.

PMID:
26846462
5.

Transposons Tn10 and Tn5.

Haniford DB, Ellis MJ.

Microbiol Spectr. 2015 Feb;3(1):MDNA3-0002-2014. doi: 10.1128/microbiolspec.MDNA3-0002-2014. Review.

PMID:
26104553
6.

A cis-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS200 transposition.

Ellis MJ, Trussler RS, Haniford DB.

Nucleic Acids Res. 2015 Jul 27;43(13):6511-27. doi: 10.1093/nar/gkv584. Epub 2015 Jun 4.

7.

Hfq binds directly to the ribosome-binding site of IS10 transposase mRNA to inhibit translation.

Ellis MJ, Trussler RS, Haniford DB.

Mol Microbiol. 2015 May;96(3):633-50. doi: 10.1111/mmi.12961. Epub 2015 Mar 11.

8.

Probing Hfq:RNA interactions with hydroxyl radical and RNase footprinting.

Ellis MJ, Trussler RS, Ross JA, Haniford DB.

Methods Mol Biol. 2015;1259:403-15. doi: 10.1007/978-1-4939-2214-7_24.

PMID:
25579599
9.

Tn5 transposition in Escherichia coli is repressed by Hfq and activated by over-expression of the small non-coding RNA SgrS.

Ross JA, Trussler RS, Black MD, McLellan CR, Haniford DB.

Mob DNA. 2014 Nov 30;5(1):27. doi: 10.1186/s13100-014-0027-z. eCollection 2014.

10.

Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system.

Ross JA, Ellis MJ, Hossain S, Haniford DB.

RNA. 2013 May;19(5):670-84. doi: 10.1261/rna.037747.112. Epub 2013 Mar 19.

11.
12.

H-NS mediates the dissociation of a refractory protein-DNA complex during Tn10/IS10 transposition.

Liu D, Haniford DB, Chalmers RM.

Nucleic Acids Res. 2011 Aug;39(15):6660-8. doi: 10.1093/nar/gkr309. Epub 2011 May 11.

13.

Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq.

Ross JA, Wardle SJ, Haniford DB.

Mol Microbiol. 2010 Nov;78(3):607-21. doi: 10.1111/j.1365-2958.2010.07359.x. Epub 2010 Sep 22.

14.

H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization.

Wardle SJ, Chan A, Haniford DB.

Nucleic Acids Res. 2009 Oct;37(18):6148-60. doi: 10.1093/nar/gkp672. Epub 2009 Aug 20.

15.

The global bacterial regulator H-NS promotes transpososome formation and transposition in the Tn5 system.

Whitfield CR, Wardle SJ, Haniford DB.

Nucleic Acids Res. 2009 Feb;37(2):309-21. doi: 10.1093/nar/gkn935. Epub 2008 Nov 28.

16.

The nucleoid binding protein H-NS acts as an anti-channeling factor to favor intermolecular Tn10 transposition and dissemination.

Singh RK, Liburd J, Wardle SJ, Haniford DB.

J Mol Biol. 2008 Feb 29;376(4):950-62. doi: 10.1016/j.jmb.2007.12.035. Epub 2007 Dec 23.

PMID:
18191147
17.

Control of transposase activity within a transpososome by the configuration of the flanking DNA segment of the transposon.

Mizuuchi M, Rice PA, Wardle SJ, Haniford DB, Mizuuchi K.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14622-7. Epub 2007 Sep 4.

18.

Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1.

Mutiu AI, Hoke SM, Genereaux J, Hannam C, MacKenzie K, Jobin-Robitaille O, Guzzo J, Côté J, Andrews B, Haniford DB, Brandl CJ.

Genetics. 2007 Sep;177(1):151-66. Epub 2007 Jul 29.

19.
20.

Transpososome dynamics and regulation in Tn10 transposition.

Haniford DB.

Crit Rev Biochem Mol Biol. 2006 Nov-Dec;41(6):407-24. Review.

PMID:
17092825
21.

Formation, characterization and partial purification of a Tn5 strand transfer complex.

Whitfield CR, Wardle SJ, Haniford DB.

J Mol Biol. 2006 Dec 1;364(3):290-301. Epub 2006 Sep 16.

PMID:
17014865
22.

The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition.

Wardle SJ, O'Carroll M, Derbyshire KM, Haniford DB.

Genes Dev. 2005 Sep 15;19(18):2224-35.

23.

Tn10 transposase mutants with altered transpososome unfolding properties are defective in hairpin formation.

Humayun S, Wardle SJ, Shilton BH, Pribil PA, Liburd J, Haniford DB.

J Mol Biol. 2005 Feb 25;346(3):703-16. Epub 2005 Jan 18.

PMID:
15713457
24.
25.
26.
27.

Mechanisms of metal ion action in Tn10 transposition.

Allingham JS, Haniford DB.

J Mol Biol. 2002 May 24;319(1):53-65.

PMID:
12051936
28.

Determinants for hairpin formation in Tn10 transposition.

Allingham JS, Wardle SJ, Haniford DB.

EMBO J. 2001 Jun 1;20(11):2931-42.

29.
31.

The RAG1/RAG2 complex constitutes a 3' flap endonuclease: implications for junctional diversity in V(D)J and transpositional recombination.

Santagata S, Besmer E, Villa A, Bozzi F, Allingham JS, Sobacchi C, Haniford DB, Vezzoni P, Nussenzweig MC, Pan ZQ, Cortes P.

Mol Cell. 1999 Dec;4(6):935-47.

32.

All three residues of the Tn 10 transposase DDE catalytic triad function in divalent metal ion binding.

Allingham JS, Pribil PA, Haniford DB.

J Mol Biol. 1999 Jun 25;289(5):1195-206.

PMID:
10373361
33.

Tn10 transposition via a DNA hairpin intermediate.

Kennedy AK, Guhathakurta A, Kleckner N, Haniford DB.

Cell. 1998 Oct 2;95(1):125-34.

37.

Intragenic suppression of integration-defective IS10 transposase mutants.

Junop MS, Hockman D, Haniford DB.

Genetics. 1994 Jun;137(2):343-52.

38.

Mechanistic aspects of DNA transposition.

Haniford DB, Chaconas G.

Curr Opin Genet Dev. 1992 Oct;2(5):698-704. Review.

PMID:
1333854
39.
40.
41.
42.

A structural basis for S1 nuclease sensitivity of double-stranded DNA.

Pulleyblank DE, Haniford DB, Morgan AR.

Cell. 1985 Aug;42(1):271-80.

PMID:
2990727
43.

Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo.

Haniford DB, Pulleyblank DE.

Nucleic Acids Res. 1985 Jun 25;13(12):4343-63.

44.

The in-vivo occurrence of Z DNA.

Haniford DB, Pulleyblank DE.

J Biomol Struct Dyn. 1983 Dec;1(3):593-609.

PMID:
6401120
45.

Facile transition of poly[d(TG) x d(CA)] into a left-handed helix in physiological conditions.

Haniford DB, Pulleyblank DE.

Nature. 1983 Apr 14;302(5909):632-4.

PMID:
6835398

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