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Items: 12

1.

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.

Handoko L, Kaczkowski B, Hon CC, Lizio M, Wakamori M, Matsuda T, Ito T, Jeyamohan P, Sato Y, Sakamoto K, Yokoyama S, Kimura H, Minoda A, Umehara T.

Epigenetics. 2018;13(4):410-431. doi: 10.1080/15592294.2018.1469891. Epub 2018 Aug 6.

2.

Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency.

Joshi O, Wang SY, Kuznetsova T, Atlasi Y, Peng T, Fabre PJ, Habibi E, Shaik J, Saeed S, Handoko L, Richmond T, Spivakov M, Burgess D, Stunnenberg HG.

Cell Stem Cell. 2015 Dec 3;17(6):748-757. doi: 10.1016/j.stem.2015.11.010.

3.

CTCF-mediated functional chromatin interactome in pluripotent cells.

Handoko L, Xu H, Li G, Ngan CY, Chew E, Schnapp M, Lee CW, Ye C, Ping JL, Mulawadi F, Wong E, Sheng J, Zhang Y, Poh T, Chan CS, Kunarso G, Shahab A, Bourque G, Cacheux-Rataboul V, Sung WK, Ruan Y, Wei CL.

Nat Genet. 2011 Jun 19;43(7):630-8. doi: 10.1038/ng.857. Erratum in: Nat Genet. 2011 Aug;43(8):815.

4.

Anharmonic oscillation effect on the Davydov-Scott monomer in a thermal bath.

Sulaiman A, Zen FP, Alatas H, Handoko LT.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jun;81(6 Pt 1):061907. Epub 2010 Jun 3.

PMID:
20866440
5.

CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression.

Schnetz MP, Handoko L, Akhtar-Zaidi B, Bartels CF, Pereira CF, Fisher AG, Adams DJ, Flicek P, Crawford GE, Laframboise T, Tesar P, Wei CL, Scacheri PC.

PLoS Genet. 2010 Jul 15;6(7):e1001023. doi: 10.1371/journal.pgen.1001023.

6.

CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis.

Zentner GE, Hurd EA, Schnetz MP, Handoko L, Wang C, Wang Z, Wei C, Tesar PJ, Hatzoglou M, Martin DM, Scacheri PC.

Hum Mol Genet. 2010 Sep 15;19(18):3491-501. doi: 10.1093/hmg/ddq265. Epub 2010 Jun 29.

7.

Diabetic cardiomyopathy in Zucker diabetic fatty rats: the forgotten right ventricle.

van den Brom CE, Bosmans JW, Vlasblom R, Handoko LM, Huisman MC, Lubberink M, Molthoff CF, Lammertsma AA, Ouwens MD, Diamant M, Boer C.

Cardiovasc Diabetol. 2010 Jun 15;9:25. doi: 10.1186/1475-2840-9-25.

8.

A signal-noise model for significance analysis of ChIP-seq with negative control.

Xu H, Handoko L, Wei X, Ye C, Sheng J, Wei CL, Lin F, Sung WK.

Bioinformatics. 2010 May 1;26(9):1199-204. doi: 10.1093/bioinformatics/btq128. Epub 2010 Apr 5.

PMID:
20371496
9.

IGHMBP2 is a ribosome-associated helicase inactive in the neuromuscular disorder distal SMA type 1 (DSMA1).

Guenther UP, Handoko L, Laggerbauer B, Jablonka S, Chari A, Alzheimer M, Ohmer J, Plöttner O, Gehring N, Sickmann A, von Au K, Schuelke M, Fischer U.

Hum Mol Genet. 2009 Apr 1;18(7):1288-300. doi: 10.1093/hmg/ddp028. Epub 2009 Jan 20.

PMID:
19158098
10.

Clinical variability in distal spinal muscular atrophy type 1 (DSMA1): determination of steady-state IGHMBP2 protein levels in five patients with infantile and juvenile disease.

Guenther UP, Handoko L, Varon R, Stephani U, Tsao CY, Mendell JR, Lützkendorf S, Hübner C, von Au K, Jablonka S, Dittmar G, Heinemann U, Schuetz A, Schuelke M.

J Mol Med (Berl). 2009 Jan;87(1):31-41. doi: 10.1007/s00109-008-0402-7. Epub 2008 Sep 18.

PMID:
18802676
11.

Asymmetric arginine dimethylation of heterogeneous nuclear ribonucleoprotein K by protein-arginine methyltransferase 1 inhibits its interaction with c-Src.

Ostareck-Lederer A, Ostareck DH, Rucknagel KP, Schierhorn A, Moritz B, Huttelmaier S, Flach N, Handoko L, Wahle E.

J Biol Chem. 2006 Apr 21;281(16):11115-25. Epub 2006 Feb 21.

12.

In vitro synthesized small interfering RNAs elicit RNA interference in african trypanosomes: an in vitro and in vivo analysis.

Best A, Handoko L, Schlüter E, Göringer HU.

J Biol Chem. 2005 May 27;280(21):20573-9. Epub 2005 Mar 21.

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