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Items: 40

1.

Comparison of ROTEM parameters from venous and intraosseous blood.

Wiegele M, Hamp T, Gratz J, Pablik E, Schaden E.

Sci Rep. 2019 Mar 6;9(1):3741. doi: 10.1038/s41598-019-40412-0.

2.

Effect of intravenous S-ketamine on the MAC of sevoflurane: a randomised, placebo-controlled, double-blinded clinical trial.

Hamp T, Baron-Stefaniak J, Krammel M, Reiter B, Langauer A, Stimpfl T, Plöchl W.

Br J Anaesth. 2018 Dec;121(6):1242-1248. doi: 10.1016/j.bja.2018.08.023. Epub 2018 Oct 15.

PMID:
30442251
3.

The impact of cardiopulmonary resuscitation (CPR) manikin chest stiffness on motivation and CPR performance measures in children undergoing CPR training-A prospective, randomized, single-blind, controlled trial.

Weidenauer D, Hamp T, Schriefl C, Holaubek C, Gattinger M, Krammel M, Winnisch M, Weidenauer A, Mundigler G, Lang I, Schreiber W, Sterz F, Herkner H, Domanovits H.

PLoS One. 2018 Aug 16;13(8):e0202430. doi: 10.1371/journal.pone.0202430. eCollection 2018.

4.

Mediastinal Hematoma as a Rare Life-Threatening Complication of Thrombolysis for Pulmonary Embolism Detected by Transthoracic Echocardiography.

Hamp T, D'Souza R, Gopalakrishnan M, Yastrebov K.

CASE (Phila). 2018 Apr 12;2(3):82-84. doi: 10.1016/j.case.2017.12.002. eCollection 2018 Jun. No abstract available.

5.

ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes.

Tran L, Hamp T, Rost B.

PLoS One. 2018 Jul 18;13(7):e0199988. doi: 10.1371/journal.pone.0199988. eCollection 2018.

6.

Gender and age-specific aspects of awareness and knowledge in basic life support.

Krammel M, Schnaubelt S, Weidenauer D, Winnisch M, Steininger M, Eichelter J, Hamp T, van Tulder R, Sulzgruber P.

PLoS One. 2018 Jun 12;13(6):e0198918. doi: 10.1371/journal.pone.0198918. eCollection 2018.

8.

Potential impacts of hypoxia and a warming ocean on oyster microbiomes.

Khan B, Clinton SM, Hamp TJ, Oliver JD, Ringwood AH.

Mar Environ Res. 2018 Aug;139:27-34. doi: 10.1016/j.marenvres.2018.04.018. Epub 2018 May 2. No abstract available.

PMID:
29753492
9.

Patients Undergoing Orthotopic Liver Transplantation Require Lower Concentrations of the Volatile Anesthetic Sevoflurane.

Baron-Stefaniak J, Götz V, Allhutter A, Schiefer J, Hamp T, Faybik P, Berlakovich G, Baron DM, Plöchl W.

Anesth Analg. 2017 Sep;125(3):783-789. doi: 10.1213/ANE.0000000000002250.

PMID:
28678075
10.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.

11.

Examining changes in bacterial abundance in complex communities using next-generation sequencing is enhanced with quantitative PCR.

Stokell JR, Hamp TJ, Steck TR.

Antonie Van Leeuwenhoek. 2016 Aug;109(8):1161-6. doi: 10.1007/s10482-016-0707-4. Epub 2016 May 9.

PMID:
27160743
12.

Feasibility of a 'reversed' isolated forearm technique by regional antagonization of rocuronium-induced neuromuscular block: a pilot study.

Hamp T, Mairweck M, Schiefer J, Krammel M, Pablik E, Wolzt M, Plöchl W.

Br J Anaesth. 2016 Jun;116(6):797-803. doi: 10.1093/bja/aew018. Epub 2016 Mar 1.

13.

Identification of epithelial ovarian tumor-specific aptamers.

Benedetto G, Hamp TJ, Wesselman PJ, Richardson C.

Nucleic Acid Ther. 2015 Jun;25(3):162-72. doi: 10.1089/nat.2014.0522. Epub 2015 Apr 20.

14.

Haemodynamic response at double lumen bronchial tube placement - Airtraq vs. MacIntosh laryngoscope, a randomised controlled trial.

Hamp T, Stumpner T, Grubhofer G, Ruetzler K, Thell R, Hager H.

Heart Lung Vessel. 2015;7(1):54-63.

15.

Increased plasma vaspin concentration in patients with sepsis: an exploratory examination.

Motal MC, Klaus DA, Lebherz-Eichinger D, Tudor B, Hamp T, Wiegele M, Seemann R, Krenn CG, Roth GA.

Biochem Med (Zagreb). 2015;25(1):90-6. doi: 10.11613/BM.2015.011.

16.

Evolutionary profiles improve protein-protein interaction prediction from sequence.

Hamp T, Rost B.

Bioinformatics. 2015 Jun 15;31(12):1945-50. doi: 10.1093/bioinformatics/btv077. Epub 2015 Feb 4.

PMID:
25657331
17.

More challenges for machine-learning protein interactions.

Hamp T, Rost B.

Bioinformatics. 2015 May 15;31(10):1521-5. doi: 10.1093/bioinformatics/btu857. Epub 2015 Jan 12.

PMID:
25586513
18.

Intravenous lidocaine increases the depth of anaesthesia of propofol for skin incision--a randomised controlled trial.

Weber U, Krammel M, Linke S, Hamp T, Stimpfl T, Reiter B, Plöchl W.

Acta Anaesthesiol Scand. 2015 Mar;59(3):310-8. doi: 10.1111/aas.12462. Epub 2015 Jan 13.

PMID:
25582611
19.

Analysis of changes in diversity and abundance of the microbial community in a cystic fibrosis patient over a multiyear period.

Stokell JR, Gharaibeh RZ, Hamp TJ, Zapata MJ, Fodor AA, Steck TR.

J Clin Microbiol. 2015 Jan;53(1):237-47. doi: 10.1128/JCM.02555-14. Epub 2014 Nov 12.

20.

Comparison of culture and molecular techniques for microbial community characterization in infected necrotizing pancreatitis.

Hanna EM, Hamp TJ, McKillop IH, Bahrani-Mougeot F, Martinie JB, Horton JM, Sindram D, Gharaibeh RZ, Fodor AA, Iannitti DA.

J Surg Res. 2014 Oct;191(2):362-9. doi: 10.1016/j.jss.2014.05.003. Epub 2014 May 9.

PMID:
24952411
21.

LocTree3 prediction of localization.

Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, Bernhofer M, Betz A, Cizmadija L, Do KT, Gerke J, Greil R, Joerdens V, Hastreiter M, Hembach K, Herzog M, Kalemanov M, Kluge M, Meier A, Nasir H, Neumaier U, Prade V, Reeb J, Sorokoumov A, Troshani I, Vorberg S, Waldraff S, Zierer J, Nielsen H, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W350-5. doi: 10.1093/nar/gku396. Epub 2014 May 21.

22.

PredictProtein--an open resource for online prediction of protein structural and functional features.

Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W337-43. doi: 10.1093/nar/gku366. Epub 2014 May 5.

23.

Reply to KN Litwak and S Levin.

Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM.

Am J Clin Nutr. 2014 Jan;99(1):210. doi: 10.3945/ajcn.113.074633. No abstract available.

PMID:
24363257
24.

Reply to JS White.

Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM.

Am J Clin Nutr. 2013 Nov;98(5):1370. doi: 10.3945/ajcn.113.072264. No abstract available.

25.

Accelerating the Original Profile Kernel.

Hamp T, Goldberg T, Rost B.

PLoS One. 2013 Jun 18;8(6):e68459. doi: 10.1371/journal.pone.0068459. Print 2013.

26.

Dietary fructose induces endotoxemia and hepatic injury in calorically controlled primates.

Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM.

Am J Clin Nutr. 2013 Aug;98(2):349-57. doi: 10.3945/ajcn.112.057331.

27.

Peak Studio: a tool for the visualization and analysis of fragment analysis files.

McCafferty J, Reid R, Spencer M, Hamp T, Fodor A.

Environ Microbiol Rep. 2012 Oct;4(5):556-61. doi: 10.1111/j.1758-2229.2012.00368.x. Epub 2012 Jul 27.

PMID:
23760901
28.

The effect of a bolus dose of intravenous lidocaine on the minimum alveolar concentration of sevoflurane: a prospective, randomized, double-blinded, placebo-controlled trial.

Hamp T, Krammel M, Weber U, Schmid R, Graf A, Plöchl W.

Anesth Analg. 2013 Aug;117(2):323-8. doi: 10.1213/ANE.0b013e318294820f. Epub 2013 Jun 6.

PMID:
23744959
29.

Homology-based inference sets the bar high for protein function prediction.

Hamp T, Kassner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Rost B.

BMC Bioinformatics. 2013;14 Suppl 3:S7. doi: 10.1186/1471-2105-14-S3-S7. Epub 2013 Feb 28.

30.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

31.

Structural and functional analysis of multi-interface domains.

Zhao L, Hoi SC, Wong L, Hamp T, Li J.

PLoS One. 2012;7(12):e50821. doi: 10.1371/journal.pone.0050821. Epub 2012 Dec 14.

32.

LocTree2 predicts localization for all domains of life.

Goldberg T, Hamp T, Rost B.

Bioinformatics. 2012 Sep 15;28(18):i458-i465. doi: 10.1093/bioinformatics/bts390.

33.

Alternative protein-protein interfaces are frequent exceptions.

Hamp T, Rost B.

PLoS Comput Biol. 2012;8(8):e1002623. doi: 10.1371/journal.pcbi.1002623. Epub 2012 Aug 2.

34.

Association between composition of the human gastrointestinal microbiome and development of fatty liver with choline deficiency.

Spencer MD, Hamp TJ, Reid RW, Fischer LM, Zeisel SH, Fodor AA.

Gastroenterology. 2011 Mar;140(3):976-86. doi: 10.1053/j.gastro.2010.11.049. Epub 2010 Dec 1.

35.

Improving structure alignment-based prediction of SCOP families using Vorolign kernels.

Hamp T, Birzele F, Buchwald F, Kramer S.

Bioinformatics. 2011 Jan 15;27(2):204-10. doi: 10.1093/bioinformatics/btq618. Epub 2010 Nov 18.

PMID:
21098432
36.

Effects of experimental choices and analysis noise on surveys of the "rare biosphere".

Hamp TJ, Jones WJ, Fodor AA.

Appl Environ Microbiol. 2009 May;75(10):3263-70. doi: 10.1128/AEM.01931-08. Epub 2009 Mar 6.

37.

Cholecystitis after trauma.

Hamp T, Fridrich P, Mauritz W, Hamid L, Pelinka LE.

J Trauma. 2009 Feb;66(2):400-6. doi: 10.1097/TA.0b013e31815edea1.

PMID:
19204513
38.

Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing.

Sanapareddy N, Hamp TJ, Gonzalez LC, Hilger HA, Fodor AA, Clinton SM.

Appl Environ Microbiol. 2009 Mar;75(6):1688-96. doi: 10.1128/AEM.01210-08. Epub 2008 Dec 29.

39.

Phase 1A safety assessment of intravenous amitriptyline.

Fridrich P, Colvin HP, Zizza A, Wasan AD, Lukanich J, Lirk P, Saria A, Zernig G, Hamp T, Gerner P.

J Pain. 2007 Jul;8(7):549-55. Epub 2007 May 23.

40.

DNA sequencing using the liquid polymer POP-7 on an ABI PRISM 3100 Genetic Analyzer.

Detwiler MM, Hamp TJ, Kazim AL.

Biotechniques. 2004 Jun;36(6):932-3. No abstract available.

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