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Items: 1 to 50 of 113

1.

Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat.

Dilks T, Halsey K, De Vos RP, Hammond-Kosack KE, Brown NA.

PLoS Pathog. 2019 Apr 1;15(4):e1007666. doi: 10.1371/journal.ppat.1007666. eCollection 2019 Apr.

2.

Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophores or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat.

Derbyshire MC, Gohari AM, Mehrabi R, Kilaru S, Steinberg G, Ali S, Bailey A, Hammond-Kosack K, Kema GHJ, Rudd JJ.

Sci Rep. 2018 Nov 20;8(1):17069. doi: 10.1038/s41598-018-35223-8.

3.

The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).

Hellin P, King R, Urban M, Hammond-Kosack KE, Legrève A.

Front Microbiol. 2018 Jun 26;9:1385. doi: 10.3389/fmicb.2018.01385. eCollection 2018.

4.

Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen.

McMillan VE, Canning G, Moughan J, White RP, Gutteridge RJ, Hammond-Kosack KE.

Sci Rep. 2018 Jun 22;8(1):9550. doi: 10.1038/s41598-018-25511-8.

5.

Foxtail mosaic virus: A Viral Vector for Protein Expression in Cereals.

Bouton C, King RC, Chen H, Azhakanandam K, Bieri S, Hammond-Kosack KE, Kanyuka K.

Plant Physiol. 2018 Aug;177(4):1352-1367. doi: 10.1104/pp.17.01679. Epub 2018 Jun 7.

PMID:
29880705
6.

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum.

King R, Brown NA, Urban M, Hammond-Kosack KE.

BMC Genomics. 2018 Apr 19;19(1):269. doi: 10.1186/s12864-018-4612-2.

7.

Elite UK winter wheat cultivars differ in their ability to support the colonization of beneficial root-infecting fungi.

Osborne SJ, McMillan VE, White R, Hammond-Kosack KE.

J Exp Bot. 2018 May 25;69(12):3103-3115. doi: 10.1093/jxb/ery136.

8.

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici.

Saintenac C, Lee WS, Cambon F, Rudd JJ, King RC, Marande W, Powers SJ, Bergès H, Phillips AL, Uauy C, Hammond-Kosack KE, Langin T, Kanyuka K.

Nat Genet. 2018 Mar;50(3):368-374. doi: 10.1038/s41588-018-0051-x. Epub 2018 Feb 12.

PMID:
29434355
9.

Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb).

Baldwin TT, Basenko E, Harb O, Brown NA, Urban M, Hammond-Kosack KE, Bregitzer PP.

Fungal Genet Biol. 2018 Jun;115:90-93. doi: 10.1016/j.fgb.2018.01.002. Epub 2018 Feb 3.

PMID:
29355605
10.

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

Kersey PJ, Allen JE, Allot A, Barba M, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Grabmueller C, Kumar N, Liu Z, Maurel T, Moore B, McDowall MD, Maheswari U, Naamati G, Newman V, Ong CK, Paulini M, Pedro H, Perry E, Russell M, Sparrow H, Tapanari E, Taylor K, Vullo A, Williams G, Zadissia A, Olson A, Stein J, Wei S, Tello-Ruiz M, Ware D, Luciani A, Potter S, Finn RD, Urban M, Hammond-Kosack KE, Bolser DM, De Silva N, Howe KL, Langridge N, Maslen G, Staines DM, Yates A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D802-D808. doi: 10.1093/nar/gkx1011.

11.

A review of wheat diseases-a field perspective.

Figueroa M, Hammond-Kosack KE, Solomon PS.

Mol Plant Pathol. 2018 Jun;19(6):1523-1536. doi: 10.1111/mpp.12618. Epub 2017 Dec 26. Review.

PMID:
29045052
12.

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces.

King R, Urban M, Lauder RP, Hawkins N, Evans M, Plummer A, Halsey K, Lovegrove A, Hammond-Kosack K, Rudd JJ.

PLoS Pathog. 2017 Oct 11;13(10):e1006672. doi: 10.1371/journal.ppat.1006672. eCollection 2017 Oct.

13.

RNAi as an emerging approach to control Fusarium head blight disease and mycotoxin contamination in cereals.

Machado AK, Brown NA, Urban M, Kanyuka K, Hammond-Kosack KE.

Pest Manag Sci. 2018 Apr;74(4):790-799. doi: 10.1002/ps.4748. Epub 2017 Nov 22. Review.

14.

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection.

Brown NA, Evans J, Mead A, Hammond-Kosack KE.

Mol Plant Pathol. 2017 Dec;18(9):1295-1312. doi: 10.1111/mpp.12564. Epub 2017 Aug 8.

15.

The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens.

Derbyshire M, Denton-Giles M, Hegedus D, Seifbarghy S, Rollins J, van Kan J, Seidl MF, Faino L, Mbengue M, Navaud O, Raffaele S, Hammond-Kosack K, Heard S, Oliver R.

Genome Biol Evol. 2017 Feb 15. doi: 10.1093/gbe/evx030. [Epub ahead of print] No abstract available.

16.

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease.

Bresso E, Togawa R, Hammond-Kosack K, Urban M, Maigret B, Martins NF.

BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):463. doi: 10.1186/s12859-016-1342-9.

17.

Annotation of Fusarium graminearum (PH-1) Version 5.0.

King R, Urban M, Hammond-Kosack KE.

Genome Announc. 2017 Jan 12;5(2). pii: e01479-16. doi: 10.1128/genomeA.01479-16.

18.

PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database.

Urban M, Cuzick A, Rutherford K, Irvine A, Pedro H, Pant R, Sadanadan V, Khamari L, Billal S, Mohanty S, Hammond-Kosack KE.

Nucleic Acids Res. 2017 Jan 4;45(D1):D604-D610. doi: 10.1093/nar/gkw1089. Epub 2016 Dec 3.

19.

Erratum: Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen.

Mehrabi Z, McMillan VE, Clark IM, Canning G, Hammond-Kosack KE, Preston G, Hirsch PR, Mauchline TH.

Sci Rep. 2016 Oct 10;6:34681. doi: 10.1038/srep34681. No abstract available.

20.

First Draft Genome Sequence of a UK Strain (UK99) of Fusarium culmorum.

Urban M, King R, Andongabo A, Maheswari U, Pedro H, Kersey P, Hammond-Kosack K.

Genome Announc. 2016 Sep 15;4(5). pii: e00771-16. doi: 10.1128/genomeA.00771-16.

21.

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach.

Acevedo-Garcia J, Spencer D, Thieron H, Reinstädler A, Hammond-Kosack K, Phillips AL, Panstruga R.

Plant Biotechnol J. 2017 Mar;15(3):367-378. doi: 10.1111/pbi.12631. Epub 2016 Sep 25.

22.

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen.

Mehrabi Z, McMillan VE, Clark IM, Canning G, Hammond-Kosack KE, Preston G, Hirsch PR, Mauchline TH.

Sci Rep. 2016 Aug 23;6:29905. doi: 10.1038/srep29905. Erratum in: Sci Rep. 2016 Oct 10;6:34681.

23.

The genome of the emerging barley pathogen Ramularia collo-cygni.

McGrann GR, Andongabo A, Sjökvist E, Trivedi U, Dussart F, Kaczmarek M, Mackenzie A, Fountaine JM, Taylor JM, Paterson LJ, Gorniak K, Burnett F, Kanyuka K, Hammond-Kosack KE, Rudd JJ, Blaxter M, Havis ND.

BMC Genomics. 2016 Aug 9;17:584. doi: 10.1186/s12864-016-2928-3.

24.

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base.

Rodríguez-Iglesias A, Rodríguez-González A, Irvine AG, Sesma A, Urban M, Hammond-Kosack KE, Wilkinson MD.

Front Plant Sci. 2016 May 12;7:641. doi: 10.3389/fpls.2016.00641. eCollection 2016.

25.

Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneol synthase-a potential target to reduce Fusarium head blight disease.

Bresso E, Leroux V, Urban M, Hammond-Kosack KE, Maigret B, Martins NF.

J Mol Model. 2016 Jul;22(7):163. doi: 10.1007/s00894-016-3021-1. Epub 2016 Jun 21.

PMID:
27324634
26.

PhytoPath: an integrative resource for plant pathogen genomics.

Pedro H, Maheswari U, Urban M, Irvine AG, Cuzick A, McDowall MD, Staines DM, Kulesha E, Hammond-Kosack KE, Kersey PJ.

Nucleic Acids Res. 2016 Jan 4;44(D1):D688-93. doi: 10.1093/nar/gkv1052. Epub 2015 Oct 17.

27.

The trans-kingdom identification of negative regulators of pathogen hypervirulence.

Brown NA, Urban M, Hammond-Kosack KE.

FEMS Microbiol Rev. 2016 Jan;40(1):19-40. doi: 10.1093/femsre/fuv042. Epub 2015 Oct 13. Review.

28.

Host to a Stranger: Arabidopsis and Fusarium Ear Blight.

Brewer HC, Hammond-Kosack KE.

Trends Plant Sci. 2015 Oct;20(10):651-663. doi: 10.1016/j.tplants.2015.06.011. Review.

PMID:
26440434
29.

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota.

Mauchline TH, Chedom-Fotso D, Chandra G, Samuels T, Greenaway N, Backhaus A, McMillan V, Canning G, Powers SJ, Hammond-Kosack KE, Hirsch PR, Clark IM, Mehrabi Z, Roworth J, Burnell J, Malone JG.

Environ Microbiol. 2015 Nov;17(11):4764-78. doi: 10.1111/1462-2920.13038. Epub 2015 Oct 6.

30.

Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence.

Urban M, Irvine AG, Cuzick A, Hammond-Kosack KE.

Front Plant Sci. 2015 Aug 6;6:605. doi: 10.3389/fpls.2015.00605. eCollection 2015.

31.

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum.

King R, Urban M, Hammond-Kosack MC, Hassani-Pak K, Hammond-Kosack KE.

BMC Genomics. 2015 Jul 22;16:544. doi: 10.1186/s12864-015-1756-1.

32.

An Interspecies Comparative Analysis of the Predicted Secretomes of the Necrotrophic Plant Pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

Heard S, Brown NA, Hammond-Kosack K.

PLoS One. 2015 Jun 24;10(6):e0130534. doi: 10.1371/journal.pone.0130534. eCollection 2015.

33.

Analysis of cytochrome b(5) reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence.

Derbyshire MC, Michaelson L, Parker J, Kelly S, Thacker U, Powers SJ, Bailey A, Hammond-Kosack K, Courbot M, Rudd J.

Fungal Genet Biol. 2015 Sep;82:69-84. doi: 10.1016/j.fgb.2015.05.008. Epub 2015 Jun 11.

34.

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions.

Urban M, King R, Hassani-Pak K, Hammond-Kosack KE.

BMC Genomics. 2015 Apr 3;16:261. doi: 10.1186/s12864-015-1412-9.

35.

Functional analysis of a Wheat Homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici.

Lee J, Orosa B, Millyard L, Edwards M, Kanyuka K, Gatehouse A, Rudd J, Hammond-Kosack K, Pain N, Sadanandom A.

New Phytol. 2015 Apr;206(2):598-605. doi: 10.1111/nph.13323. Epub 2015 Jan 30.

36.

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition.

Rudd JJ, Kanyuka K, Hassani-Pak K, Derbyshire M, Andongabo A, Devonshire J, Lysenko A, Saqi M, Desai NM, Powers SJ, Hooper J, Ambroso L, Bharti A, Farmer A, Hammond-Kosack KE, Dietrich RA, Courbot M.

Plant Physiol. 2015 Mar;167(3):1158-85. doi: 10.1104/pp.114.255927. Epub 2015 Jan 16.

37.

Deregulation of Plant Cell Death Through Disruption of Chloroplast Functionality Affects Asexual Sporulation of Zymoseptoria tritici on Wheat.

Lee WS, Devonshire BJ, Hammond-Kosack KE, Rudd JJ, Kanyuka K.

Mol Plant Microbe Interact. 2015 May;28(5):590-604. doi: 10.1094/MPMI-10-14-0346-R. Epub 2015 Apr 22.

38.

Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum.

Brewer HC, Hawkins ND, Hammond-Kosack KE.

BMC Plant Biol. 2014 Nov 29;14:317. doi: 10.1186/s12870-014-0317-0.

39.

The Pathogen-Host Interactions database (PHI-base): additions and future developments.

Urban M, Pant R, Raghunath A, Irvine AG, Pedro H, Hammond-Kosack KE.

Nucleic Acids Res. 2015 Jan;43(Database issue):D645-55. doi: 10.1093/nar/gku1165. Epub 2014 Nov 20.

40.

Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species.

McMillan VE, Gutteridge RJ, Hammond-Kosack KE.

BMC Plant Biol. 2014 Aug 2;14:212. doi: 10.1186/s12870-014-0212-8.

41.

Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat.

Lee WS, Rudd JJ, Hammond-Kosack KE, Kanyuka K.

Mol Plant Microbe Interact. 2014 Mar;27(3):236-43. doi: 10.1094/MPMI-07-13-0201-R.

42.

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum.

Lysenko A, Urban M, Bennett L, Tsoka S, Janowska-Sejda E, Rawlings CJ, Hammond-Kosack KE, Saqi M.

PLoS One. 2013 Jul 4;8(7):e67926. doi: 10.1371/journal.pone.0067926. Print 2013.

43.

Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum.

Lawler K, Hammond-Kosack K, Brazma A, Coulson RM.

BMC Syst Biol. 2013 Jun 27;7:52. doi: 10.1186/1752-0509-7-52.

44.

FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner.

Pasquali M, Spanu F, Scherm B, Balmas V, Hoffmann L, Hammond-Kosack KE, Beyer M, Migheli Q.

PLoS One. 2013;8(2):e57429. doi: 10.1371/journal.pone.0057429. Epub 2013 Feb 22.

45.

Characterization of the sterol 14α-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function.

Fan J, Urban M, Parker JE, Brewer HC, Kelly SL, Hammond-Kosack KE, Fraaije BA, Liu X, Cools HJ.

New Phytol. 2013 May;198(3):821-35. doi: 10.1111/nph.12193. Epub 2013 Feb 27.

46.

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.

Geiser DM, Aoki T, Bacon CW, Baker SE, Bhattacharyya MK, Brandt ME, Brown DW, Burgess LW, Chulze S, Coleman JJ, Correll JC, Covert SF, Crous PW, Cuomo CA, De Hoog GS, Di Pietro A, Elmer WH, Epstein L, Frandsen RJ, Freeman S, Gagkaeva T, Glenn AE, Gordon TR, Gregory NF, Hammond-Kosack KE, Hanson LE, Jímenez-Gasco Mdel M, Kang S, Kistler HC, Kuldau GA, Leslie JF, Logrieco A, Lu G, Lysøe E, Ma LJ, McCormick SP, Migheli Q, Moretti A, Munaut F, O'Donnell K, Pfenning L, Ploetz RC, Proctor RH, Rehner SA, Robert VA, Rooney AP, Bin Salleh B, Scandiani MM, Scauflaire J, Short DP, Steenkamp E, Suga H, Summerell BA, Sutton DA, Thrane U, Trail F, Van Diepeningen A, Vanetten HD, Viljoen A, Waalwijk C, Ward TJ, Wingfield MJ, Xu JR, Yang XB, Yli-Mattila T, Zhang N.

Phytopathology. 2013 May;103(5):400-8. doi: 10.1094/PHYTO-07-12-0150-LE.

47.

Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola.

Morais do Amaral A, Antoniw J, Rudd JJ, Hammond-Kosack KE.

PLoS One. 2012;7(12):e49904. doi: 10.1371/journal.pone.0049904. Epub 2012 Dec 7.

48.

Exploitation of genomics in fungicide research: current status and future perspectives.

Cools HJ, Hammond-Kosack KE.

Mol Plant Pathol. 2013 Feb;14(2):197-210. doi: 10.1111/mpp.12001. Epub 2012 Nov 16. Review.

PMID:
23157348
49.
50.

The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis.

Brown NA, Antoniw J, Hammond-Kosack KE.

PLoS One. 2012;7(4):e33731. doi: 10.1371/journal.pone.0033731. Epub 2012 Apr 6.

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