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Viral emergence in marine mammals in the North Pacific may be linked to Arctic sea ice reduction.

VanWormer E, Mazet JAK, Hall A, Gill VA, Boveng PL, London JM, Gelatt T, Fadely BS, Lander ME, Sterling J, Burkanov VN, Ream RR, Brock PM, Rea LD, Smith BR, Jeffers A, Henstock M, Rehberg MJ, Burek-Huntington KA, Cosby SL, Hammond JA, Goldstein T.

Sci Rep. 2019 Nov 7;9(1):15569. doi: 10.1038/s41598-019-51699-4.


The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system.

Maccari G, Robinson J, Hammond JA, Marsh SGE.

Immunogenetics. 2019 Oct 22. doi: 10.1007/s00251-019-01133-w. [Epub ahead of print] Review.


Nomenclature report 2019: major histocompatibility complex genes and alleles of Great and Small Ape and Old and New World monkey species.

de Groot NG, Otting N, Maccari G, Robinson J, Hammond JA, Blancher A, Lafont BAP, Guethlein LA, Wroblewski EE, Marsh SGE, Shiina T, Walter L, Vigilant L, Parham P, O'Connor DH, Bontrop RE.

Immunogenetics. 2019 Oct 17. doi: 10.1007/s00251-019-01132-x. [Epub ahead of print] Review.


The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.

Schwartz JC, Sanderson ND, Bickhart DM, Smith TPL, Hammond JA.

Front Immunol. 2019 Sep 26;10:2302. doi: 10.3389/fimmu.2019.02302. eCollection 2019.


Radiotherapy versus transoral robotic surgery and neck dissection for oropharyngeal squamous cell carcinoma (ORATOR): an open-label, phase 2, randomised trial.

Nichols AC, Theurer J, Prisman E, Read N, Berthelet E, Tran E, Fung K, de Almeida JR, Bayley A, Goldstein DP, Hier M, Sultanem K, Richardson K, Mlynarek A, Krishnan S, Le H, Yoo J, MacNeil SD, Winquist E, Hammond JA, Venkatesan V, Kuruvilla S, Warner A, Mitchell S, Chen J, Corsten M, Johnson-Obaseki S, Eapen L, Odell M, Parker C, Wehrli B, Kwan K, Palma DA.

Lancet Oncol. 2019 Oct;20(10):1349-1359. doi: 10.1016/S1470-2045(19)30410-3. Epub 2019 Aug 12.


PhenX—Establishing a Consensus Process to Select Common Measures for Collaborative Research [Internet].

Maiese DR, Hendershot TP, Strader LC, Wagener DK, Hammond JA, Huggins W, Kwok RK, Hancock DB, Whitehead NS, Nettles DS, Pratt JG, Scott MS, Conway KP, Junkins HA, Ramos EM, Hamilton CM.

Research Triangle Park (NC): RTI Press; 2013 Oct.


Attenuation of Infectious Bronchitis Virus in Eggs Results in Different Patterns of Genomic Variation across Multiple Replicates.

Oade MS, Keep S, Freimanis GL, Orton RJ, Britton P, Hammond JA, Bickerton E.

J Virol. 2019 Jun 28;93(14). pii: e00492-19. doi: 10.1128/JVI.00492-19. Print 2019 Jul 15.


Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket.

Craveur P, Gres AT, Kirby KA, Liu D, Hammond JA, Deng Y, Forli S, Goodsell DS, Williamson JR, Sarafianos SG, Olson AJ.

MBio. 2019 Mar 12;10(2). pii: e02858-18. doi: 10.1128/mBio.02858-18.


Mobile inflow cannula leading to positional ventricular tachycardia.

Patel N, Hammond JA, Gluck J.

Artif Organs. 2019 Jul;43(7):699-700. doi: 10.1111/aor.13405. Epub 2019 Jan 4. No abstract available.


Vasopressin therapy in cardiac surgery.

Kunkes JH, Baker WL, Hammond JA, Gluck J.

J Card Surg. 2019 Jan;34(1):20-27. doi: 10.1111/jocs.13968. Epub 2018 Dec 30.


Comparative MHC nomenclature: report from the ISAG/IUIS-VIC committee 2018.

Ballingall KT, Bontrop RE, Ellis SA, Grimholt U, Hammond JA, Ho CS, Kaufman J, Kennedy LJ, Maccari G, Miller D, Robinson J, Marsh SGE.

Immunogenetics. 2018 Nov;70(10):625-632. doi: 10.1007/s00251-018-1073-3. Epub 2018 Jul 24.


IPD-MHC: nomenclature requirements for the non-human major histocompatibility complex in the next-generation sequencing era.

Maccari G, Robinson J, Bontrop RE, Otting N, de Groot NG, Ho CS, Ballingall KT, Marsh SGE, Hammond JA.

Immunogenetics. 2018 Nov;70(10):619-623. doi: 10.1007/s00251-018-1072-4. Epub 2018 Jul 19.


The unique evolution of the pig LRC, a single KIR but expansion of LILR and a novel Ig receptor family.

Schwartz JC, Hammond JA.

Immunogenetics. 2018 Nov;70(10):661-669. doi: 10.1007/s00251-018-1067-1. Epub 2018 Jun 21.


The use of lumacaftor/ivacaftor to treat acute deterioration in paediatric cystic fibrosis.

Hammond JA, Connett GJ.

Paediatr Respir Rev. 2018 Jun;27:16-17. doi: 10.1016/j.prrv.2018.05.008. Epub 2018 May 19.


Nomenclature for the KIR of non-human species.

Robinson J, Guethlein LA, Maccari G, Blokhuis J, Bimber BN, de Groot NG, Sanderson ND, Abi-Rached L, Walter L, Bontrop RE, Hammond JA, Marsh SGE, Parham P.

Immunogenetics. 2018 Sep;70(9):571-583. doi: 10.1007/s00251-018-1064-4. Epub 2018 Jun 4.


Induction of influenza-specific local CD8 T-cells in the respiratory tract after aerosol delivery of vaccine antigen or virus in the Babraham inbred pig.

Tungatt K, Dolton G, Morgan SB, Attaf M, Fuller A, Whalley T, Hemmink JD, Porter E, Szomolay B, Montoya M, Hammond JA, Miles JJ, Cole DK, Townsend A, Bailey M, Rizkallah PJ, Charleston B, Tchilian E, Sewell AK.

PLoS Pathog. 2018 May 17;14(5):e1007017. doi: 10.1371/journal.ppat.1007017. eCollection 2018 May.


The major histocompatibility complex homozygous inbred Babraham pig as a resource for veterinary and translational medicine.

Schwartz JC, Hemmink JD, Graham SP, Tchilian E, Charleston B, Hammer SE, Ho CS, Hammond JA.

HLA. 2018 Apr 23. doi: 10.1111/tan.13281. [Epub ahead of print]


Splicing Site Recognition by Synergy of Three Domains in Splicing Factor RBM10.

Serrano P, Hammond JA, Geralt M, Wüthrich K.

Biochemistry. 2018 Mar 13;57(10):1563-1567. doi: 10.1021/acs.biochem.7b01242. Epub 2018 Feb 16.


Individual student characteristics and attainment in pre registration physiotherapy: a retrospective multi site cohort study.

Norris M, Hammond JA, Williams A, Grant R, Naylor S, Rozario C.

Physiotherapy. 2018 Dec;104(4):446-452. doi: 10.1016/ Epub 2017 Oct 31.


'Student-y or studious': An exploration of students' perceptions of parallel learning in preregistration physiotherapy education.

Milligan J, Grafton K, Hammond JA.

Physiother Theory Pract. 2018 Jun;34(6):472-482. doi: 10.1080/09593985.2017.1422166. Epub 2018 Jan 10.


The antibody loci of the domestic goat (Capra hircus).

Schwartz JC, Philp RL, Bickhart DM, Smith TPL, Hammond JA.

Immunogenetics. 2018 May;70(5):317-326. doi: 10.1007/s00251-017-1033-3. Epub 2017 Oct 23.


Comparing Tolerance of Ambiguity in Veterinary and Medical Students.

Hancock J, Hammond JA, Roberts M, Mattick K.

J Vet Med Educ. Fall 2017;44(3):523-530. doi: 10.3138/jvme.0916-150R1.


A Survey of DDX21 Activity During Rev/RRE Complex Formation.

Hammond JA, Zhou L, Lamichhane R, Chu HY, Millar DP, Gerace L, Williamson JR.

J Mol Biol. 2018 Feb 16;430(4):537-553. doi: 10.1016/j.jmb.2017.06.023. Epub 2017 Jul 10.


A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly.

Lamichhane R, Hammond JA, Pauszek RF 3rd, Anderson RM, Pedron I, van der Schans E, Williamson JR, Millar DP.

Nucleic Acids Res. 2017 May 5;45(8):4632-4641. doi: 10.1093/nar/gkx206.


Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.

Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, Zhou Y, Sun J, Crisà A, Ponce de León FA, Schwartz JC, Hammond JA, Waldbieser GC, Schroeder SG, Liu GE, Dunham MJ, Shendure J, Sonstegard TS, Phillippy AM, Van Tassell CP, Smith TP.

Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6.


The B Cell Response to Foot-and-Mouth Disease Virus in Cattle following Sequential Vaccination with Multiple Serotypes.

Grant CFJ, Carr BV, Kotecha A, van den Born E, Stuart DI, Hammond JA, Charleston B.

J Virol. 2017 Apr 13;91(9). pii: e02157-16. doi: 10.1128/JVI.02157-16. Print 2017 May 1.


Development of a New Scale to Measure Ambiguity Tolerance in Veterinary Students.

Hammond JA, Hancock J, Martin MS, Jamieson S, Mellor DJ.

J Vet Med Educ. Spring 2017;44(1):38-49. doi: 10.3138/jvme.0216-040R.


The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation.

Schwartz JC, Gibson MS, Heimeier D, Koren S, Phillippy AM, Bickhart DM, Smith TP, Medrano JF, Hammond JA.

Immunogenetics. 2017 Apr;69(4):255-269. doi: 10.1007/s00251-017-0973-y. Epub 2017 Feb 9.


A DEAD-Box Helicase Mediates an RNA Structural Transition in the HIV-1 Rev Response Element.

Hammond JA, Lamichhane R, Millar DP, Williamson JR.

J Mol Biol. 2017 Mar 10;429(5):697-714. doi: 10.1016/j.jmb.2017.01.018. Epub 2017 Jan 31.


IPD-MHC 2.0: an improved inter-species database for the study of the major histocompatibility complex.

Maccari G, Robinson J, Ballingall K, Guethlein LA, Grimholt U, Kaufman J, Ho CS, de Groot NG, Flicek P, Bontrop RE, Hammond JA, Marsh SG.

Nucleic Acids Res. 2017 Jan 4;45(D1):D860-D864. doi: 10.1093/nar/gkw1050. Epub 2016 Nov 28.


Evaluating organ preservation outcome as treatment endpoint for T1aN0 glottic cancer.

Low TH, Yeh D, Zhang T, Araslanova R, Hammond JA, Palma D, Read N, Venkatesan V, MacNeil SD, Yoo J, Nichols A, Fung K.

Laryngoscope. 2017 Jun;127(6):1322-1327. doi: 10.1002/lary.26317. Epub 2016 Oct 25.


Prognostic Value of p16 Status on the Development of a Complete Response in Involved Oropharynx Cancer Neck Nodes After Cisplatin-Based Chemoradiation: A Secondary Analysis of NRG Oncology RTOG 0129.

Galloway TJ, Zhang QE, Nguyen-Tan PF, Rosenthal DI, Soulieres D, Fortin A, Silverman CL, Daly ME, Ridge JA, Hammond JA, Le QT.

Int J Radiat Oncol Biol Phys. 2016 Oct 1;96(2):362-371. doi: 10.1016/j.ijrobp.2016.05.026. Epub 2016 May 28.


A vision of KIR variation at super resolution.

Hammond JA, Carrington M, Khakoo SI.

Immunology. 2016 Jul;148(3):249-52. doi: 10.1111/imm.12606. Epub 2016 Apr 5.


Communication and respect for people with dementia: student learning (CARDS) - the development and evaluation of a pilot of an education intervention for pre-qualifying healthcare students.

Wood JH, Alushi L, Hammond JA.

Int Psychogeriatr. 2016 Apr;28(4):647-56. doi: 10.1017/S104161021500188X. Epub 2015 Nov 17.


The assembly and characterisation of two structurally distinct cattle MHC class I haplotypes point to the mechanisms driving diversity.

Schwartz JC, Hammond JA.

Immunogenetics. 2015 Sep;67(9):539-44. doi: 10.1007/s00251-015-0859-9. Epub 2015 Jul 31.


Cattle NK Cell Heterogeneity and the Influence of MHC Class I.

Allan AJ, Sanderson ND, Gubbins S, Ellis SA, Hammond JA.

J Immunol. 2015 Sep 1;195(5):2199-206. doi: 10.4049/jimmunol.1500227. Epub 2015 Jul 27.


Common cancer in a wild animal: the California sea lion (Zalophus californianus) as an emerging model for carcinogenesis.

Browning HM, Gulland FM, Hammond JA, Colegrove KM, Hall AJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Jul 19;370(1673). pii: 20140228. doi: 10.1098/rstb.2014.0228. Review.


Implementing a patient portal at the family medicine center.

Savoy M, Hammond JA, Castellano L.

Del Med J. 2015 Mar;87(3):81-4. No abstract available.


Evaluation of dementia education programs for pre-registration healthcare students-A review of the literature.

Alushi L, Hammond JA, Wood JH.

Nurse Educ Today. 2015 Sep;35(9):992-8. doi: 10.1016/j.nedt.2015.04.006. Epub 2015 Apr 25. Review.


Definition of the cattle killer cell Ig-like receptor gene family: comparison with aurochs and human counterparts.

Sanderson ND, Norman PJ, Guethlein LA, Ellis SA, Williams C, Breen M, Park SD, Magee DA, Babrzadeh F, Warry A, Watson M, Bradley DG, MacHugh DE, Parham P, Hammond JA.

J Immunol. 2014 Dec 15;193(12):6016-30. doi: 10.4049/jimmunol.1401980. Epub 2014 Nov 14.


The functional significance of cattle major histocompatibility complex class I genetic diversity.

Ellis SA, Hammond JA.

Annu Rev Anim Biosci. 2014 Feb;2:285-306. doi: 10.1146/annurev-animal-022513-114234. Epub 2013 Sep 25.


Cortisol reactivity to social stress as a mediator of early adversity on risk and adaptive outcomes.

Conradt E, Abar B, Lester BM, LaGasse LL, Shankaran S, Bada H, Bauer CR, Whitaker TM, Hammond JA.

Child Dev. 2014 Nov-Dec;85(6):2279-98. doi: 10.1111/cdev.12316. Epub 2014 Nov 6.


Evidence for a genetic basis of urogenital carcinoma in the wild California sea lion.

Browning HM, Acevedo-Whitehouse K, Gulland FM, Hall AJ, Finlayson J, Dagleish MP, Billington KJ, Colegrove K, Hammond JA.

Proc Biol Sci. 2014 Dec 7;281(1796):20140240. doi: 10.1098/rspb.2014.0240.


Physiological correlates of neurobehavioral disinhibition that relate to drug use and risky sexual behavior in adolescents with prenatal substance exposure.

Conradt E, Lagasse LL, Shankaran S, Bada H, Bauer CR, Whitaker TM, Hammond JA, Lester BM.

Dev Neurosci. 2014;36(3-4):306-15. doi: 10.1159/000365004. Epub 2014 Jul 15.


The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA.

Colussi TM, Costantino DA, Hammond JA, Ruehle GM, Nix JC, Kieft JS.

Nature. 2014 Jul 17;511(7509):366-9. doi: 10.1038/nature13378. Epub 2014 Jun 8.


The contributions of early adverse experiences and trajectories of respiratory sinus arrhythmia on the development of neurobehavioral disinhibition among children with prenatal substance exposure.

Conradt E, Degarmo D, Fisher P, Abar B, Lester BM, Lagasse LL, Shankaran S, Bada H, Bauer CR, Whitaker TM, Hammond JA.

Dev Psychopathol. 2014 Nov;26(4 Pt 1):901-16. doi: 10.1017/S095457941400056X. Epub 2014 Jun 9.


Sheath hemorrhage after percutaneous ventricular assist device implantation.

Siddiqi S, Ganga HV, Dhesi P, Azemi T, Chamakura S, Kiernan FJ, Hammond JA, Sadiq IR.

Conn Med. 2014 Apr;78(4):203-6.


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