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Items: 1 to 50 of 65

1.

Enrichment of Lignin-Derived Carbon in Mineral-Associated Soil Organic Matter.

Huang W, Hammel KE, Hao J, Thompson A, Timokhin VI, Hall SJ.

Environ Sci Technol. 2019 Jul 2;53(13):7522-7531. doi: 10.1021/acs.est.9b01834. Epub 2019 Jun 18.

PMID:
31177774
2.

Fungal lignin peroxidase does not produce the veratryl alcohol cation radical as a diffusible ligninolytic oxidant.

Houtman CJ, Maligaspe E, Hunt CG, Fernández-Fueyo E, Martínez AT, Hammel KE.

J Biol Chem. 2018 Mar 30;293(13):4702-4712. doi: 10.1074/jbc.RA117.001153. Epub 2018 Feb 9.

3.

An optical method for carbon dioxide isotopes and mole fractions in small gas samples: Tracing microbial respiration from soil, litter, and lignin.

Hall SJ, Huang W, Hammel KE.

Rapid Commun Mass Spectrom. 2017 Nov 30;31(22):1938-1946. doi: 10.1002/rcm.7973.

PMID:
28851092
4.

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta.

Zhang J, Presley GN, Hammel KE, Ryu JS, Menke JR, Figueroa M, Hu D, Orr G, Schilling JS.

Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):10968-73. doi: 10.1073/pnas.1608454113. Epub 2016 Sep 12.

5.

Acridine Orange Indicates Early Oxidation of Wood Cell Walls by Fungi.

Houtman CJ, Kitin P, Houtman JC, Hammel KE, Hunt CG.

PLoS One. 2016 Jul 25;11(7):e0159715. doi: 10.1371/journal.pone.0159715. eCollection 2016.

6.

Construction of a genetic linkage map and analysis of quantitative trait loci associated with the agronomically important traits of Pleurotus eryngii.

Im CH, Park YH, Hammel KE, Park B, Kwon SW, Ryu H, Ryu JS.

Fungal Genet Biol. 2016 Jul;92:50-64. doi: 10.1016/j.fgb.2016.05.002. Epub 2016 May 7.

PMID:
27166667
7.

Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood.

Korripally P, Hunt CG, Houtman CJ, Jones DC, Kitin PJ, Cullen D, Hammel KE.

Appl Environ Microbiol. 2015 Nov;81(22):7802-12. doi: 10.1128/AEM.02064-15. Epub 2015 Sep 4.

8.

Lignin decomposition is sustained under fluctuating redox conditions in humid tropical forest soils.

Hall SJ, Silver WL, Timokhin VI, Hammel KE.

Glob Chang Biol. 2015 Jul;21(7):2818-2828. doi: 10.1111/gcb.12908. Epub 2015 Apr 30.

9.

Basidiomycete DyPs: Genomic diversity, structural-functional aspects, reaction mechanism and environmental significance.

Linde D, Ruiz-Dueñas FJ, Fernández-Fueyo E, Guallar V, Hammel KE, Pogni R, Martínez AT.

Arch Biochem Biophys. 2015 May 15;574:66-74. doi: 10.1016/j.abb.2015.01.018. Epub 2015 Jan 28. Review.

10.

A highly diastereoselective oxidant contributes to Ligninolysis by the white rot basidiomycete Ceriporiopsis subvermispora.

Yelle DJ, Kapich AN, Houtman CJ, Lu F, Timokhin VI, Fort RC Jr, Ralph J, Hammel KE.

Appl Environ Microbiol. 2014 Dec;80(24):7536-44. doi: 10.1128/AEM.02111-14. Epub 2014 Sep 26.

11.

Ligninolytic peroxidase genes in the oyster mushroom genome: heterologous expression, molecular structure, catalytic and stability properties, and lignin-degrading ability.

Fernández-Fueyo E, Ruiz-Dueñas FJ, Martínez MJ, Romero A, Hammel KE, Medrano FJ, Martínez AT.

Biotechnol Biofuels. 2014 Jan 3;7(1):2. doi: 10.1186/1754-6834-7-2.

12.

Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism.

Miki Y, Pogni R, Acebes S, Lucas F, Fernández-Fueyo E, Baratto MC, Fernández MI, de los Ríos V, Ruiz-Dueñas FJ, Sinicropi A, Basosi R, Hammel KE, Guallar V, Martínez AT.

Biochem J. 2013 Jun 15;452(3):575-84. doi: 10.1042/BJ20130251.

PMID:
23548202
13.

Evidence from Serpula lacrymans that 2,5-dimethoxyhydroquinone Is a lignocellulolytic agent of divergent brown rot basidiomycetes.

Korripally P, Timokhin VI, Houtman CJ, Mozuch MD, Hammel KE.

Appl Environ Microbiol. 2013 Apr;79(7):2377-83. doi: 10.1128/AEM.03880-12. Epub 2013 Feb 1.

14.

Spatial mapping of extracellular oxidant production by a white rot basidiomycete on wood reveals details of ligninolytic mechanism.

Hunt CG, Houtman CJ, Jones DC, Kitin P, Korripally P, Hammel KE.

Environ Microbiol. 2013 Mar;15(3):956-66. doi: 10.1111/1462-2920.12039. Epub 2012 Dec 4.

PMID:
23206186
15.

Lignin-degrading peroxidases from genome of selective ligninolytic fungus Ceriporiopsis subvermispora.

Fernández-Fueyo E, Ruiz-Dueñas FJ, Miki Y, Martínez MJ, Hammel KE, Martínez AT.

J Biol Chem. 2012 May 11;287(20):16903-16. doi: 10.1074/jbc.M112.356378. Epub 2012 Mar 21.

16.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, Ryu JS, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter BonDurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavín JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kües U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, LaButti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5458-63. doi: 10.1073/pnas.1119912109. Epub 2012 Mar 20. Erratum in: Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352. San, Ryu Jae [corrected to Ryu, Jae San].

17.

Comparative evaluation of manganese peroxidase- and Mn(III)-initiated peroxidation of C18 unsaturated fatty acids by different methods.

Kapich AN, Korneichik TV, Hammel KE, Hatakka A.

Enzyme Microb Technol. 2011 Jun 10;49(1):25-9. doi: 10.1016/j.enzmictec.2011.04.009. Epub 2011 Apr 21.

PMID:
22112267
18.

Proteomic and functional analysis of the cellulase system expressed by Postia placenta during brown rot of solid wood.

Ryu JS, Shary S, Houtman CJ, Panisko EA, Korripally P, St John FJ, Crooks C, Siika-Aho M, Magnuson JK, Hammel KE.

Appl Environ Microbiol. 2011 Nov;77(22):7933-41. doi: 10.1128/AEM.05496-11. Epub 2011 Sep 23.

19.

Preparation of human drug metabolites using fungal peroxygenases.

Poraj-Kobielska M, Kinne M, Ullrich R, Scheibner K, Kayser G, Hammel KE, Hofrichter M.

Biochem Pharmacol. 2011 Oct 1;82(7):789-96. doi: 10.1016/j.bcp.2011.06.020. Epub 2011 Jun 23.

PMID:
21723855
20.

Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta.

Yelle DJ, Wei D, Ralph J, Hammel KE.

Environ Microbiol. 2011 Apr;13(4):1091-100. doi: 10.1111/j.1462-2920.2010.02417.x. Epub 2011 Jan 24.

PMID:
21261800
21.

Stepwise oxygenations of toluene and 4-nitrotoluene by a fungal peroxygenase.

Kinne M, Zeisig C, Ullrich R, Kayser G, Hammel KE, Hofrichter M.

Biochem Biophys Res Commun. 2010 Jun 18;397(1):18-21. doi: 10.1016/j.bbrc.2010.05.036. Epub 2010 May 12.

PMID:
20470751
22.

Laccase and its role in production of extracellular reactive oxygen species during wood decay by the brown rot basidiomycete Postia placenta.

Wei D, Houtman CJ, Kapich AN, Hunt CG, Cullen D, Hammel KE.

Appl Environ Microbiol. 2010 Apr;76(7):2091-7. doi: 10.1128/AEM.02929-09. Epub 2010 Feb 12.

23.

Oxidative cleavage of diverse ethers by an extracellular fungal peroxygenase.

Kinne M, Poraj-Kobielska M, Ralph SA, Ullrich R, Hofrichter M, Hammel KE.

J Biol Chem. 2009 Oct 23;284(43):29343-9. doi: 10.1074/jbc.M109.040857. Epub 2009 Aug 27.

24.

Regioselective preparation of 5-hydroxypropranolol and 4'-hydroxydiclofenac with a fungal peroxygenase.

Kinne M, Poraj-Kobielska M, Aranda E, Ullrich R, Hammel KE, Scheibner K, Hofrichter M.

Bioorg Med Chem Lett. 2009 Jun 1;19(11):3085-7. doi: 10.1016/j.bmcl.2009.04.015. Epub 2009 Apr 9.

PMID:
19394224
25.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

26.

Differential expression in Phanerochaete chrysosporium of membrane-associated proteins relevant to lignin degradation.

Shary S, Kapich AN, Panisko EA, Magnuson JK, Cullen D, Hammel KE.

Appl Environ Microbiol. 2008 Dec;74(23):7252-7. doi: 10.1128/AEM.01997-08. Epub 2008 Oct 10.

27.

Functional linkage of Na+-Ca2+-exchanger to sarco/endoplasmic reticulum Ca2+ pump in coronary artery: comparison of smooth muscle and endothelial cells.

Davis KA, Samson SE, Hammel KE, Kiss L, Fulop F, Grover AK.

J Cell Mol Med. 2009 Aug;13(8B):1775-83. doi: 10.1111/j.1582-4934.2008.00480.x. Epub 2008 Aug 21.

28.

Evidence for cleavage of lignin by a brown rot basidiomycete.

Yelle DJ, Ralph J, Lu F, Hammel KE.

Environ Microbiol. 2008 Jul;10(7):1844-9. doi: 10.1111/j.1462-2920.2008.01605.x. Epub 2008 Mar 23.

PMID:
18363712
29.

Role of fungal peroxidases in biological ligninolysis.

Hammel KE, Cullen D.

Curr Opin Plant Biol. 2008 Jun;11(3):349-55. doi: 10.1016/j.pbi.2008.02.003. Epub 2008 Mar 21. Review.

PMID:
18359268
30.

New insights into the ligninolytic capability of a wood decay ascomycete.

Shary S, Ralph SA, Hammel KE.

Appl Environ Microbiol. 2007 Oct;73(20):6691-4. Epub 2007 Aug 31.

31.

Chlorination of lignin by ubiquitous fungi has a likely role in global organochlorine production.

Ortiz-Bermúdez P, Hirth KC, Srebotnik E, Hammel KE.

Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):3895-900. Epub 2007 Feb 26.

32.

Fungal hydroquinones contribute to brown rot of wood.

Suzuki MR, Hunt CG, Houtman CJ, Dalebroux ZD, Hammel KE.

Environ Microbiol. 2006 Dec;8(12):2214-23.

PMID:
17107562
33.

Evidence That Ceriporiopsis subvermispora Degrades Nonphenolic Lignin Structures by a One-Electron-Oxidation Mechanism.

Srebotnik E, Jensen KA, Kawai S, Hammel KE.

Appl Environ Microbiol. 1997 Nov;63(11):4435-40.

34.
35.
36.

Chlorination and cleavage of lignin structures by fungal chloroperoxidases.

Ortiz-Bermúdez P, Srebotnik E, Hammel KE.

Appl Environ Microbiol. 2003 Aug;69(8):5015-8.

37.

Significant levels of extracellular reactive oxygen species produced by brown rot basidiomycetes on cellulose.

Cohen R, Jensen KA, Houtman CJ, Hammel KE.

FEBS Lett. 2002 Nov 20;531(3):483-8.

38.

An NADH:quinone oxidoreductase active during biodegradation by the brown-rot basidiomycete Gloeophyllum trabeum.

Jensen Jr KA Jr, Ryan ZC, Vanden Wymelenberg A, Cullen D, Hammel KE.

Appl Environ Microbiol. 2002 Jun;68(6):2699-703.

39.

Pathways for extracellular Fenton chemistry in the brown rot basidiomycete Gloeophyllum trabeum.

Jensen KA Jr, Houtman CJ, Ryan ZC, Hammel KE.

Appl Environ Microbiol. 2001 Jun;67(6):2705-11.

40.

Degradation of nonphenolic lignin by the laccase/1-hydroxybenzotriazole system.

Srebotnik E, Hammel KE.

J Biotechnol. 2000 Aug 25;81(2-3):179-88.

PMID:
10989177
41.

Peroxyl radicals are potential agents of lignin biodegradation.

Kapich AN, Jensen KA, Hammel KE.

FEBS Lett. 1999 Nov 12;461(1-2):115-9.

43.

Rapid polyether cleavage via extracellular one-electron oxidation by a brown-rot basidiomycete.

Kerem Z, Bao W, Hammel KE.

Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10373-7.

44.
45.

Manganese-Dependent Cleavage of Nonphenolic Lignin Structures by Ceriporiopsis subvermispora in the Absence of Lignin Peroxidase.

Jensen KA, Bao W, Kawai S, Srebotnik E, Hammel KE.

Appl Environ Microbiol. 1997 Feb;63(2):815.

46.

Manganese-Dependent Cleavage of Nonphenolic Lignin Structures by Ceriporiopsis subvermispora in the Absence of Lignin Peroxidase.

Jensen KA, Bao W, Kawai S, Srebotnik E, Hammel KE.

Appl Environ Microbiol. 1996 Oct;62(10):3679-86.

47.
48.

New polymeric model substrates for the study of microbial ligninolysis.

Kawai S, Jensen KA Jr, Bao W, Hammel KE.

Appl Environ Microbiol. 1995 Sep;61(9):3407-14.

49.

Mechanisms for polycyclic aromatic hydrocarbon degradation by ligninolytic fungi.

Hammel KE.

Environ Health Perspect. 1995 Jun;103 Suppl 5:41-3. Review.

50.

Fungal degradation of recalcitrant nonphenolic lignin structures without lignin peroxidase.

Srebotnik E, Jensen KA Jr, Hammel KE.

Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12794-7.

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