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The effects of spaceflight and fracture healing on distant skeletal sites.

Dadwal UC, Maupin KA, Zamarioli A, Tucker A, Harris JS, Fischer JP, Rytlewski JD, Scofield DC, Wininger AE, Bhatti FUR, Alvarez M, Childress PJ, Chakraborty N, Gautam A, Hammamieh R, Kacena MA.

Sci Rep. 2019 Aug 6;9(1):11419. doi: 10.1038/s41598-019-47695-3.


Identifying Plasma Derived Extracellular Vesicle (EV) Contained Biomarkers in the Development of Chronic Neuropathic Pain.

Sosanya NM, Kumar R, Clifford JL, Chavez R, Dimitrov G, Srinivasan S, Gautam A, Trevino AV, Williams M, Hammamieh R, Cheppudira BP, Christy RJ, Crimmins SL.

J Pain. 2019 Jun 19. pii: S1526-5900(18)30775-2. doi: 10.1016/j.jpain.2019.05.015. [Epub ahead of print]


Molecular alterations induced by Yersinia pestis, dengue virus and Staphylococcal enterotoxin B under severe stress.

Muhie S, Campbell R, Gautam A, Hammamieh R, Cummings C, Jett M.

Brain Behav Immun. 2019 Aug;80:725-741. doi: 10.1016/j.bbi.2019.05.022. Epub 2019 May 15.


Metabolomic analysis of male combat veterans with post traumatic stress disorder.

Mellon SH, Bersani FS, Lindqvist D, Hammamieh R, Donohue D, Dean K, Jett M, Yehuda R, Flory J, Reus VI, Bierer LM, Makotkine I, Abu Amara D, Henn Haase C, Coy M, Doyle FJ 3rd, Marmar C, Wolkowitz OM.

PLoS One. 2019 Mar 18;14(3):e0213839. doi: 10.1371/journal.pone.0213839. eCollection 2019.


Dyspigmented hypertrophic scars: Beyond skin color.

Alkhalil A, Carney BC, Travis TE, Muhie S, Miller SA, Ramella-Roman JC, Ghassemi P, Hammamieh R, Jett M, Moffatt LT, Shupp JW.

Pigment Cell Melanoma Res. 2019 Sep;32(5):643-656. doi: 10.1111/pcmr.12780. Epub 2019 Apr 5.


Metabolomic analyses reveal lipid abnormalities and hepatic dysfunction in non-human primate model for Yersinia pestis.

Gautam A, Muhie S, Chakraborty N, Hoke A, Donohue D, Miller SA, Hammamieh R, Jett M.

Metabolomics. 2018 Dec 29;15(1):2. doi: 10.1007/s11306-018-1457-2.


The responses of lungs and adjacent lymph nodes in responding to Yersinia pestis infection: A transcriptomic study using a non-human primate model.

Chakraborty N, Gautam A, Muhie S, Miller SA, Moyler C, Jett M, Hammamieh R.

PLoS One. 2019 Feb 21;14(2):e0209592. doi: 10.1371/journal.pone.0209592. eCollection 2019.


Functional Heatmap: an automated and interactive pattern recognition tool to integrate time with multi-omics assays.

Williams JR, Yang R, Clifford JL, Watson D, Campbell R, Getnet D, Kumar R, Hammamieh R, Jett M.

BMC Bioinformatics. 2019 Feb 15;20(1):81. doi: 10.1186/s12859-019-2657-0.


PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data.

Yang R, Watson D, Williams J, Kumar R, Campbell R, Mudunuri U, Hammamieh R, Jett M.

BMC Bioinformatics. 2018 Nov 29;19(1):458. doi: 10.1186/s12859-018-2494-6.


Epigenetic Age in Male Combat-Exposed War Veterans: Associations with Posttraumatic Stress Disorder Status.

Verhoeven JE, Yang R, Wolkowitz OM, Bersani FS, Lindqvist D, Mellon SH, Yehuda R, Flory JD, Lin J, Abu-Amara D, Makotkine I, Marmar C, Jett M, Hammamieh R.

Mol Neuropsychiatry. 2018 Oct;4(2):90-99. doi: 10.1159/000491431. Epub 2018 Sep 5.


Military Supplement: Assessment of Coagulation Homeostasis in Blunt, Penetrating, and Thermal Trauma: Guidance for a Multi-Center Systems Biology Approach.

Shupp JW, Brummel-Ziedins KE, Cohen MJ, Freeman K, Hammamieh R, Mudunuri US, Orfeo T, Moffatt LT, Brownstein BH, Mann KG, Jett M, Pusateri AE.

Shock. 2018 Oct 18. doi: 10.1097/SHK.0000000000001275. [Epub ahead of print]


Key Cell Functions are Modulated by Compression in an Animal Model of Hypertrophic Scar.

Alkhalil A, Carney BC, Travis TE, Muhie S, Miller SA, Ramella-Roman JC, Ghassemi P, Hammamieh R, Jett M, Moffatt LT, Shupp JW.

Wounds. 2018 Dec;30(12):353-362. Epub 2018 Sep 30.


Poisoning with Soman, an Organophosphorus Nerve Agent, Alters Fecal Bacterial Biota and Urine Metabolites: a Case for Novel Signatures for Asymptomatic Nerve Agent Exposure.

Getnet D, Gautam A, Kumar R, Hoke A, Cheema AK, Rossetti F, Schultz CR, Hammamieh R, Lumley LA, Jett M.

Appl Environ Microbiol. 2018 Oct 17;84(21). pii: e00978-18. doi: 10.1128/AEM.00978-18. Print 2018 Nov 1.


Altered fecal microbiota composition in all male aggressor-exposed rodent model simulating features of post-traumatic stress disorder.

Gautam A, Kumar R, Chakraborty N, Muhie S, Hoke A, Hammamieh R, Jett M.

J Neurosci Res. 2018 Jul;96(7):1311-1323. doi: 10.1002/jnr.24229. Epub 2018 Apr 6.


Metabolism, Metabolomics, and Inflammation in Posttraumatic Stress Disorder.

Mellon SH, Gautam A, Hammamieh R, Jett M, Wolkowitz OM.

Biol Psychiatry. 2018 May 15;83(10):866-875. doi: 10.1016/j.biopsych.2018.02.007. Epub 2018 Feb 22. Review.


Forces associated with launch into space do not impact bone fracture healing.

Childress P, Brinker A, Gong CS, Harris J, Olivos DJ 3rd, Rytlewski JD, Scofield DC, Choi SY, Shirazi-Fard Y, McKinley TO, Chu TG, Conley CL, Chakraborty N, Hammamieh R, Kacena MA.

Life Sci Space Res (Amst). 2018 Feb;16:52-62. doi: 10.1016/j.lssr.2017.11.002. Epub 2017 Nov 11.


Gene-metabolite profile integration to understand the cause of spaceflight induced immunodeficiency.

Chakraborty N, Cheema A, Gautam A, Donohue D, Hoke A, Conley C, Jett M, Hammamieh R.

NPJ Microgravity. 2018 Jan 29;4:4. doi: 10.1038/s41526-017-0038-4. eCollection 2018.


Gene expression associated with suicide attempts in US veterans.

Flory JD, Donohue D, Muhie S, Yang R, Miller SA, Hammamieh R, Ryberg K, Yehuda R.

Transl Psychiatry. 2017 Sep 5;7(9):e1226. doi: 10.1038/tp.2017.179.


Whole-genome DNA methylation status associated with clinical PTSD measures of OIF/OEF veterans.

Hammamieh R, Chakraborty N, Gautam A, Muhie S, Yang R, Donohue D, Kumar R, Daigle BJ Jr, Zhang Y, Amara DA, Miller SA, Srinivasan S, Flory J, Yehuda R, Petzold L, Wolkowitz OM, Mellon SH, Hood L, Doyle FJ 3rd, Marmar C, Jett M.

Transl Psychiatry. 2017 Jul 11;7(7):e1169. doi: 10.1038/tp.2017.129.


Molecular indicators of stress-induced neuroinflammation in a mouse model simulating features of post-traumatic stress disorder.

Muhie S, Gautam A, Chakraborty N, Hoke A, Meyerhoff J, Hammamieh R, Jett M.

Transl Psychiatry. 2017 May 23;7(5):e1135. doi: 10.1038/tp.2017.91.


Genome to Phenome: A Systems Biology Approach to PTSD Using an Animal Model.

Chakraborty N, Meyerhoff J, Jett M, Hammamieh R.

Methods Mol Biol. 2017;1598:117-154. doi: 10.1007/978-1-4939-6952-4_6. Review.


Changes in intestinal microbiota composition and metabolism coincide with increased intestinal permeability in young adults under prolonged physiological stress.

Karl JP, Margolis LM, Madslien EH, Murphy NE, Castellani JW, Gundersen Y, Hoke AV, Levangie MW, Kumar R, Chakraborty N, Gautam A, Hammamieh R, Martini S, Montain SJ, Pasiakos SM.

Am J Physiol Gastrointest Liver Physiol. 2017 Jun 1;312(6):G559-G571. doi: 10.1152/ajpgi.00066.2017. Epub 2017 Mar 23.


Contributions of polyunsaturated fatty acids (PUFA) on cerebral neurobiology: an integrated omics approach with epigenomic focus.

Chakraborty N, Muhie S, Kumar R, Gautam A, Srinivasan S, Sowe B, Dimitrov G, Miller SA, Jett M, Hammamieh R.

J Nutr Biochem. 2017 Apr;42:84-94. doi: 10.1016/j.jnutbio.2016.12.006. Epub 2017 Jan 5.


Identification of extracellular miRNA in archived serum samples by next-generation sequencing from RNA extracted using multiple methods.

Gautam A, Kumar R, Dimitrov G, Hoke A, Hammamieh R, Jett M.

Mol Biol Rep. 2016 Oct;43(10):1165-78. doi: 10.1007/s11033-016-4043-6. Epub 2016 Aug 10.


Correction: Temporal Progression of Pneumonic Plague in Blood of Nonhuman Primate: A Transcriptomic Analysis.

Hammamieh R, Muhie S, Borschel R, Gautam A, Miller SA, Chakraborty N, Jett M.

PLoS One. 2016 Apr 14;11(4):e0154006. doi: 10.1371/journal.pone.0154006. eCollection 2016. No abstract available.


Temporal Progression of Pneumonic Plague in Blood of Nonhuman Primate: A Transcriptomic Analysis.

Hammamieh R, Muhie S, Borschel R, Gautam A, Miller SA, Chakraborty N, Jett M.

PLoS One. 2016 Mar 22;11(3):e0151788. doi: 10.1371/journal.pone.0151788. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0154006.


Gene and stress history interplay in emergence of PTSD-like features.

Chakraborty N, Meyerhoff J, Gautam A, Muhie S, Jibitu M, De Lima TC, Hammamieh R, Jett M.

Behav Brain Res. 2015 Oct 1;292:266-77. doi: 10.1016/j.bbr.2015.05.038. Epub 2015 May 27.


Stress-caused anergy of leukocytes towards Staphylococcal enterotoxin B and exposure transcriptome signatures.

Muhie S, Hammamieh R, Cummings C, Yang D, Jett M.

Genes Immun. 2015 Jul-Aug;16(5):330-46. doi: 10.1038/gene.2015.16. Epub 2015 May 28.


A genome-wide identified risk variant for PTSD is a methylation quantitative trait locus and confers decreased cortical activation to fearful faces.

Almli LM, Stevens JS, Smith AK, Kilaru V, Meng Q, Flory J, Abu-Amara D, Hammamieh R, Yang R, Mercer KB, Binder EB, Bradley B, Hamilton S, Jett M, Yehuda R, Marmar CR, Ressler KJ.

Am J Med Genet B Neuropsychiatr Genet. 2015 Jul;168B(5):327-36. doi: 10.1002/ajmg.b.32315. Epub 2015 May 18.


Brain transcriptome profiles in mouse model simulating features of post-traumatic stress disorder.

Muhie S, Gautam A, Meyerhoff J, Chakraborty N, Hammamieh R, Jett M.

Mol Brain. 2015 Feb 28;8:14. doi: 10.1186/s13041-015-0104-3.


Characterization of the interaction of staphylococcal enterotoxin B with CD1d expressed in human renal proximal tubule epithelial cells.

Hammamieh R, Chakraborty N, Lin Y, Shupp JW, Miller SA, Morris S, Jett M.

BMC Microbiol. 2015 Feb 4;15:12. doi: 10.1186/s12866-015-0344-5.


Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder.

Gautam A, D'Arpa P, Donohue DE, Muhie S, Chakraborty N, Luke BT, Grapov D, Carroll EE, Meyerhoff JL, Hammamieh R, Jett M.

PLoS One. 2015 Jan 28;10(1):e0117092. doi: 10.1371/journal.pone.0117092. eCollection 2015.


Systems biology approach to understanding post-traumatic stress disorder.

Thakur GS, Daigle BJ Jr, Dean KR, Zhang Y, Rodriguez-Fernandez M, Hammamieh R, Yang R, Jett M, Palma J, Petzold LR, Doyle FJ 3rd.

Mol Biosyst. 2015 Apr;11(4):980-93. doi: 10.1039/c4mb00404c. Review.


Chronic stress impairs collateral blood flow recovery in aged mice.

Lassance-Soares RM, Sood S, Chakraborty N, Jhamnani S, Aghili N, Nashin H, Hammamieh R, Jett M, Epstein SE, Burnett MS.

J Cardiovasc Transl Res. 2014 Nov;7(8):749-55. doi: 10.1007/s12265-014-9592-2. Epub 2014 Oct 15.


An integrated omics analysis: impact of microgravity on host response to lipopolysaccharide in vitro.

Chakraborty N, Gautam A, Muhie S, Miller SA, Jett M, Hammamieh R.

BMC Genomics. 2014 Aug 7;15:659. doi: 10.1186/1471-2164-15-659.


Transcriptomic analysis of the effects of a fish oil enriched diet on murine brains.

Hammamieh R, Chakraborty N, Gautam A, Miller SA, Muhie S, Meyerhoff J, Jett M.

PLoS One. 2014 Mar 14;9(3):e90425. doi: 10.1371/journal.pone.0090425. eCollection 2014.


Molecular evidence of stress-induced acute heart injury in a mouse model simulating posttraumatic stress disorder.

Cho JH, Lee I, Hammamieh R, Wang K, Baxter D, Scherler K, Etheridge A, Kulchenko A, Gautam A, Muhie S, Chakraborty N, Galas DJ, Jett M, Hood L.

Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3188-93. doi: 10.1073/pnas.1400113111. Epub 2014 Feb 10.


SysBioCube: A Data Warehouse and Integrative Data Analysis Platform Facilitating Systems Biology Studies of Disorders of Military Relevance.

Chowbina S, Hammamieh R, Kumar R, Chakraborty N, Yang R, Mudunuri U, Jett M, Palma JM, Stephens R.

AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:34-8. eCollection 2013.


Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder.

Yang R, Daigle BJ Jr, Muhie SY, Hammamieh R, Jett M, Petzold L, Doyle FJ 3rd.

BMC Syst Biol. 2013 Aug 20;7:80. doi: 10.1186/1752-0509-7-80.


Preliminary studies on differential expression of auditory functional genes in the brain after repeated blast exposures.

Valiyaveettil M, Alamneh Y, Miller SA, Hammamieh R, Wang Y, Arun P, Wei Y, Oguntayo S, Nambiar MP.

J Rehabil Res Dev. 2012;49(7):1153-62.


Modulation of cholinergic pathways and inflammatory mediators in blast-induced traumatic brain injury.

Valiyaveettil M, Alamneh YA, Miller SA, Hammamieh R, Arun P, Wang Y, Wei Y, Oguntayo S, Long JB, Nambiar MP.

Chem Biol Interact. 2013 Mar 25;203(1):371-5. doi: 10.1016/j.cbi.2012.10.022. Epub 2012 Nov 15.


Transcriptome characterization of immune suppression from battlefield-like stress.

Muhie S, Hammamieh R, Cummings C, Yang D, Jett M.

Genes Immun. 2013 Jan;14(1):19-34. doi: 10.1038/gene.2012.49. Epub 2012 Oct 25.


Murine model of repeated exposures to conspecific trained aggressors simulates features of post-traumatic stress disorder.

Hammamieh R, Chakraborty N, De Lima TC, Meyerhoff J, Gautam A, Muhie S, D'Arpa P, Lumley L, Carroll E, Jett M.

Behav Brain Res. 2012 Nov 1;235(1):55-66. doi: 10.1016/j.bbr.2012.07.022. Epub 2012 Jul 20.


Examination of local and systemic in vivo responses to electrical injury using an electrical burn delivery system.

Shupp JW, Moffatt LT, Nguyen T, Ramella-Roman JC, Hammamieh R, Miller SA, Leto EJ, Jo DY, Randad PR, Jett M, Jeng JC, Jordan MH.

J Burn Care Res. 2012 Jan-Feb;33(1):118-29. doi: 10.1097/BCR.0b013e3182373a50.


Gene expression profiling of monkeypox virus-infected cells reveals novel interfaces for host-virus interactions.

Alkhalil A, Hammamieh R, Hardick J, Ichou MA, Jett M, Ibrahim S.

Virol J. 2010 Jul 28;7:173. doi: 10.1186/1743-422X-7-173.


Estrogen receptor-dependent genomic expression profiles in breast cancer cells in response to fatty acids.

Alquobaili F, Miller SA, Muhie S, Day A, Jett M, Hammamieh R.

J Carcinog. 2010 Feb 4;8:17. doi: 10.4103/1477-3163.59539.


The cellular and molecular immune response of the weanling piglet to staphylococcal enterotoxin B.

Bi S, Das R, Zelazowska E, Mani S, Neill R, Coleman GD, Yang DC, Hammamieh R, Shupp JW, Jett M.

Exp Biol Med (Maywood). 2009 Nov;234(11):1305-15. doi: 10.3181/0901-RM-2.


Activity of the Bacillus anthracis 20 kDa protective antigen component.

Hammamieh R, Ribot WJ, Abshire TG, Jett M, Ezzell J.

BMC Infect Dis. 2008 Sep 22;8:124. doi: 10.1186/1471-2334-8-124.


Staphylococcal enterotoxin B causes differential expression of Rnd3 and RhoA in renal proximal tubule epithelial cells while inducing actin stress fiber assembly and apoptosis.

Ionin B, Hammamieh R, Shupp JW, Das R, Pontzer CH, Jett M.

Microb Pathog. 2008 Nov-Dec;45(5-6):303-9. doi: 10.1016/j.micpath.2008.07.002. Epub 2008 Aug 5.


Safety, immunogenicity, and efficacy of the ML29 reassortant vaccine for Lassa fever in small non-human primates.

Lukashevich IS, Carrion R Jr, Salvato MS, Mansfield K, Brasky K, Zapata J, Cairo C, Goicochea M, Hoosien GE, Ticer A, Bryant J, Davis H, Hammamieh R, Mayda M, Jett M, Patterson J.

Vaccine. 2008 Sep 26;26(41):5246-54. doi: 10.1016/j.vaccine.2008.07.057. Epub 2008 Aug 8.

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