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Trace Element Concentrations in Hydrothermal Silica Deposits as a Potential Biosignature.

Gangidine A, Havig JR, Fike DA, Jones C, Hamilton TL, Czaja AD.

Astrobiology. 2019 Dec 20. doi: 10.1089/ast.2018.1994. [Epub ahead of print]


Anoxygenic Phototrophs Span Geochemical Gradients and Diverse Morphologies in Terrestrial Geothermal Springs.

Hamilton TL, Bennett AC, Murugapiran SK, Havig JR.

mSystems. 2019 Nov 5;4(6). pii: e00498-19. doi: 10.1128/mSystems.00498-19.


Matrotrophic viviparity constrains microbiome acquisition during gestation in a live-bearing cockroach, Diploptera punctata.

Jennings EC, Korthauer MW, Hamilton TL, Benoit JB.

Ecol Evol. 2019 Aug 22;9(18):10601-10614. doi: 10.1002/ece3.5580. eCollection 2019 Sep.


The trouble with oxygen: The ecophysiology of extant phototrophs and implications for the evolution of oxygenic photosynthesis.

Hamilton TL.

Free Radic Biol Med. 2019 Aug 20;140:233-249. doi: 10.1016/j.freeradbiomed.2019.05.003. Epub 2019 May 9. Review.


Single-cell approaches identify the molecular network driving malignant hematopoietic stem cell self-renewal.

Shepherd MS, Li J, Wilson NK, Oedekoven CA, Li J, Belmonte M, Fink J, Prick JCM, Pask DC, Hamilton TL, Loeffler D, Rao A, Schröder T, Göttgens B, Green AR, Kent DG.

Blood. 2018 Aug 23;132(8):791-803. doi: 10.1182/blood-2017-12-821066. Epub 2018 Jul 10.


Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat.

Haas S, de Beer D, Klatt JM, Fink A, Rench RM, Hamilton TL, Meyer V, Kakuk B, Macalady JL.

Front Microbiol. 2018 Apr 27;9:858. doi: 10.3389/fmicb.2018.00858. eCollection 2018.


Inorganic carbon addition stimulates snow algae primary productivity.

Hamilton TL, Havig JR.

ISME J. 2018 Jan 29. doi: 10.1038/s41396-018-0048-6. [Epub ahead of print]


Cyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii.

Hamilton TL, Klatt JM, de Beer D, Macalady JL.

ISME J. 2018 Feb;12(2):568-584. doi: 10.1038/ismej.2017.193. Epub 2018 Jan 12.


Mutant calreticulin knockin mice develop thrombocytosis and myelofibrosis without a stem cell self-renewal advantage.

Li J, Prins D, Park HJ, Grinfeld J, Gonzalez-Arias C, Loughran S, Dovey OM, Klampfl T, Bennett C, Hamilton TL, Pask DC, Sneade R, Williams M, Aungier J, Ghevaert C, Vassiliou GS, Kent DG, Green AR.

Blood. 2018 Feb 8;131(6):649-661. doi: 10.1182/blood-2017-09-806356. Epub 2017 Dec 27.


Microbial communities and organic biomarkers in a Proterozoic-analog sinkhole.

Hamilton TL, Welander PV, Albrecht HL, Fulton JM, Schaperdoth I, Bird LR, Summons RE, Freeman KH, Macalady JL.

Geobiology. 2017 Nov;15(6):784-797. doi: 10.1111/gbi.12252.


Geobiological feedbacks and the evolution of thermoacidophiles.

Colman DR, Poudel S, Hamilton TL, Havig JR, Selensky MJ, Shock EL, Boyd ES.

ISME J. 2018 Jan;12(1):225-236. doi: 10.1038/ismej.2017.162. Epub 2017 Oct 13.


The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5.

Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW.

Front Microbiol. 2017 Jul 12;8:1305. doi: 10.3389/fmicb.2017.01305. eCollection 2017.


Draft Genome Sequence of Anoxybacillusayderensis Strain MT-Cab (Firmicutes).

Thiel V, Tank M, Tomsho LP, Burhans R, Gay SE, Hamilton TL, Schuster SC, Bryant DA.

Genome Announc. 2017 Jun 29;5(26). pii: e00547-17. doi: 10.1128/genomeA.00547-17.


Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment.

Kirschner K, Chandra T, Kiselev V, Flores-Santa Cruz D, Macaulay IC, Park HJ, Li J, Kent DG, Kumar R, Pask DC, Hamilton TL, Hemberg M, Reik W, Green AR.

Cell Rep. 2017 May 23;19(8):1503-1511. doi: 10.1016/j.celrep.2017.04.074.


Microbial ecology of mountain glacier ecosystems: biodiversity, ecological connections and implications of a warming climate.

Hotaling S, Hood E, Hamilton TL.

Environ Microbiol. 2017 Aug;19(8):2935-2948. doi: 10.1111/1462-2920.13766. Epub 2017 May 30. Review.


Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah.

Boyd ES, Yu RQ, Barkay T, Hamilton TL, Baxter BK, Naftz DL, Marvin-DiPasquale M.

Sci Total Environ. 2017 Mar 1;581-582:495-506. doi: 10.1016/j.scitotenv.2016.12.157. Epub 2017 Jan 3.


Primary productivity of snow algae communities on stratovolcanoes of the Pacific Northwest.

Hamilton TL, Havig J.

Geobiology. 2017 Mar;15(2):280-295. doi: 10.1111/gbi.12219. Epub 2016 Dec 5.


Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria.

Hamilton TL, Bovee RJ, Sattin SR, Mohr W, Gilhooly WP 3rd, Lyons TW, Pearson A, Macalady JL.

Front Microbiol. 2016 Apr 27;7:598. doi: 10.3389/fmicb.2016.00598. eCollection 2016.


Substrate preference, uptake kinetics and bioenergetics in a facultatively autotrophic, thermoacidophilic crenarchaeote.

Urschel MR, Hamilton TL, Roden EE, Boyd ES.

FEMS Microbiol Ecol. 2016 May;92(5):fiw069. doi: 10.1093/femsec/fiw069. Epub 2016 Mar 31.


Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph.

Harrold ZR, Skidmore ML, Hamilton TL, Desch L, Amada K, van Gelder W, Glover K, Roden EE, Boyd ES.

Appl Environ Microbiol. 2015 Dec 28;82(5):1486-95. doi: 10.1128/AEM.03398-15.


The role of biology in planetary evolution: cyanobacterial primary production in low-oxygen Proterozoic oceans.

Hamilton TL, Bryant DA, Macalady JL.

Environ Microbiol. 2016 Feb;18(2):325-40. doi: 10.1111/1462-2920.13118. Epub 2015 Dec 21. Review.


Metabolic diversity and ecological niches of Achromatium populations revealed with single-cell genomic sequencing.

Mansor M, Hamilton TL, Fantle MS, Macalady JL.

Front Microbiol. 2015 Aug 10;6:822. doi: 10.3389/fmicb.2015.00822. eCollection 2015.


Draft Genome Sequence of the Piezotolerant and Crude Oil-Degrading Bacterium Rhodococcus qingshengii Strain TUHH-12.

Lincoln SA, Hamilton TL, Valladares Juárez AG, Schedler M, Macalady JL, Müller R, Freeman KH.

Genome Announc. 2015 Apr 9;3(2). pii: e00268-15. doi: 10.1128/genomeA.00268-15.


Evolution of molybdenum nitrogenase during the transition from anaerobic to aerobic metabolism.

Boyd ES, Costas AM, Hamilton TL, Mus F, Peters JW.

J Bacteriol. 2015 May;197(9):1690-9. doi: 10.1128/JB.02611-14. Epub 2015 Mar 2.


Metagenomic insights into S(0) precipitation in a terrestrial subsurface lithoautotrophic ecosystem.

Hamilton TL, Jones DS, Schaperdoth I, Macalady JL.

Front Microbiol. 2015 Jan 8;5:756. doi: 10.3389/fmicb.2014.00756. eCollection 2014.


[FeFe]-hydrogenase abundance and diversity along a vertical redox gradient in Great Salt Lake, USA.

Boyd ES, Hamilton TL, Swanson KD, Howells AE, Baxter BK, Meuser JE, Posewitz MC, Peters JW.

Int J Mol Sci. 2014 Nov 28;15(12):21947-66. doi: 10.3390/ijms151221947.


Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi).

Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA.

Genome Announc. 2014 Sep 4;2(5). pii: e00872-14. doi: 10.1128/genomeA.00872-14.


Draft Genome Sequence of the Moderately Thermophilic Bacterium Schleiferia thermophila Strain Yellowstone (Bacteroidetes).

Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Ramaley RF, Schuster SC, Steinke L, Bryant DA.

Genome Announc. 2014 Aug 28;2(4). pii: e00860-14. doi: 10.1128/genomeA.00860-14.


Chemolithotrophic primary production in a subglacial ecosystem.

Boyd ES, Hamilton TL, Havig JR, Skidmore ML, Shock EL.

Appl Environ Microbiol. 2014 Oct;80(19):6146-53. doi: 10.1128/AEM.01956-14. Epub 2014 Aug 1.


Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake.

Hamilton TL, Bovee RJ, Thiel V, Sattin SR, Mohr W, Schaperdoth I, Vogl K, Gilhooly WP 3rd, Lyons TW, Tomsho LP, Schuster SC, Overmann J, Bryant DA, Pearson A, Macalady JL.

Geobiology. 2014 Sep;12(5):451-68. doi: 10.1111/gbi.12092. Epub 2014 Jun 28.


JAK2V617F homozygosity drives a phenotypic switch in myeloproliferative neoplasms, but is insufficient to sustain disease.

Li J, Kent DG, Godfrey AL, Manning H, Nangalia J, Aziz A, Chen E, Saeb-Parsy K, Fink J, Sneade R, Hamilton TL, Pask DC, Silber Y, Zhao X, Ghevaert C, Liu P, Green AR.

Blood. 2014 May 15;123(20):3139-51. doi: 10.1182/blood-2013-06-510222. Epub 2014 Apr 1.


Competition for ammonia influences the structure of chemotrophic communities in geothermal springs.

Hamilton TL, Koonce E, Howells A, Havig JR, Jewell T, de la Torre JR, Peters JW, Boyd ES.

Appl Environ Microbiol. 2014 Jan;80(2):653-61. doi: 10.1128/AEM.02577-13. Epub 2013 Nov 15.


Energy, ecology and the distribution of microbial life.

Macalady JL, Hamilton TL, Grettenberger CL, Jones DS, Tsao LE, Burgos WD.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20120383. doi: 10.1098/rstb.2012.0383. Print 2013 Jul 19. Review.


Self-renewal of single mouse hematopoietic stem cells is reduced by JAK2V617F without compromising progenitor cell expansion.

Kent DG, Li J, Tanna H, Fink J, Kirschner K, Pask DC, Silber Y, Hamilton TL, Sneade R, Simons BD, Green AR.

PLoS Biol. 2013;11(6):e1001576. doi: 10.1371/journal.pbio.1001576. Epub 2013 Jun 4. Erratum in: PLoS Biol. 2015 Mar;13(3):e1002092.


The role of tetraether lipid composition in the adaptation of thermophilic archaea to acidity.

Boyd ES, Hamilton TL, Wang J, He L, Zhang CL.

Front Microbiol. 2013 Apr 3;4:62. doi: 10.3389/fmicb.2013.00062. eCollection 2013.


Molecular evidence for an active endogenous microbiome beneath glacial ice.

Hamilton TL, Peters JW, Skidmore ML, Boyd ES.

ISME J. 2013 Jul;7(7):1402-12. doi: 10.1038/ismej.2013.31. Epub 2013 Mar 14.


Radical AdoMet enzymes in complex metal cluster biosynthesis.

Duffus BR, Hamilton TL, Shepard EM, Boyd ES, Peters JW, Broderick JB.

Biochim Biophys Acta. 2012 Nov;1824(11):1254-63. doi: 10.1016/j.bbapap.2012.01.002. Epub 2012 Jan 14. Review.


An alternative path for the evolution of biological nitrogen fixation.

Boyd ES, Hamilton TL, Peters JW.

Front Microbiol. 2011 Oct 5;2:205. doi: 10.3389/fmicb.2011.00205. eCollection 2011.


Environmental constraints defining the distribution, composition, and evolution of chlorophototrophs in thermal features of Yellowstone National Park.

Hamilton TL, Vogl K, Bryant DA, Boyd ES, Peters JW.

Geobiology. 2012 May;10(3):236-49. doi: 10.1111/j.1472-4669.2011.00296.x. Epub 2011 Sep 28.


Differential accumulation of nif structural gene mRNA in Azotobacter vinelandii.

Hamilton TL, Jacobson M, Ludwig M, Boyd ES, Bryant DA, Dean DR, Peters JW.

J Bacteriol. 2011 Sep;193(17):4534-6. doi: 10.1128/JB.05100-11. Epub 2011 Jul 1.


Transcriptional profiling of nitrogen fixation in Azotobacter vinelandii.

Hamilton TL, Ludwig M, Dixon R, Boyd ES, Dos Santos PC, Setubal JC, Bryant DA, Dean DR, Peters JW.

J Bacteriol. 2011 Sep;193(17):4477-86. doi: 10.1128/JB.05099-11. Epub 2011 Jul 1.


Diversity, abundance, and potential activity of nitrifying and nitrate-reducing microbial assemblages in a subglacial ecosystem.

Boyd ES, Lange RK, Mitchell AC, Havig JR, Hamilton TL, Lafrenière MJ, Shock EL, Peters JW, Skidmore M.

Appl Environ Microbiol. 2011 Jul;77(14):4778-87. doi: 10.1128/AEM.00376-11. Epub 2011 May 27.


A late methanogen origin for molybdenum-dependent nitrogenase.

Boyd ES, Anbar AD, Miller S, Hamilton TL, Lavin M, Peters JW.

Geobiology. 2011 May;9(3):221-32. doi: 10.1111/j.1472-4669.2011.00278.x.


Biological nitrogen fixation in acidic high-temperature geothermal springs in Yellowstone National Park, Wyoming.

Hamilton TL, Lange RK, Boyd ES, Peters JW.

Environ Microbiol. 2011 Aug;13(8):2204-15. doi: 10.1111/j.1462-2920.2011.02475.x. Epub 2011 Mar 30.


Environmental constraints underpin the distribution and phylogenetic diversity of nifH in the Yellowstone geothermal complex.

Hamilton TL, Boyd ES, Peters JW.

Microb Ecol. 2011 May;61(4):860-70. doi: 10.1007/s00248-011-9824-9. Epub 2011 Mar 2.


FAD binding by ApbE protein from Salmonella enterica: a new class of FAD-binding proteins.

Boyd JM, Endrizzi JA, Hamilton TL, Christopherson MR, Mulder DW, Downs DM, Peters JW.

J Bacteriol. 2011 Feb;193(4):887-95. doi: 10.1128/JB.00730-10. Epub 2010 Dec 10.


[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism.

Boyd ES, Hamilton TL, Spear JR, Lavin M, Peters JW.

ISME J. 2010 Dec;4(12):1485-95. doi: 10.1038/ismej.2010.76. Epub 2010 Jun 10.


Crystal structure of the L protein of Rhodobacter sphaeroides light-independent protochlorophyllide reductase with MgADP bound: a homologue of the nitrogenase Fe protein.

Sarma R, Barney BM, Hamilton TL, Jones A, Seefeldt LC, Peters JW.

Biochemistry. 2008 Dec 9;47(49):13004-15. doi: 10.1021/bi801058r.


The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene.

Kong YW, Cannell IG, de Moor CH, Hill K, Garside PG, Hamilton TL, Meijer HA, Dobbyn HC, Stoneley M, Spriggs KA, Willis AE, Bushell M.

Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):8866-71. doi: 10.1073/pnas.0800650105. Epub 2008 Jun 25.

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