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Exascale applications: skin in the game.

Alexander F, Almgren A, Bell J, Bhattacharjee A, Chen J, Colella P, Daniel D, DeSlippe J, Diachin L, Draeger E, Dubey A, Dunning T, Evans T, Foster I, Francois M, Germann T, Gordon M, Habib S, Halappanavar M, Hamilton S, Hart W, Henry Huang Z, Hungerford A, Kasen D, Kent PRC, Kolev T, Kothe DB, Kronfeld A, Luo Y, Mackenzie P, McCallen D, Messer B, Mniszewski S, Oehmen C, Perazzo A, Perez D, Richards D, Rider WJ, Rieben R, Roche K, Siegel A, Sprague M, Steefel C, Stevens R, Syamlal M, Taylor M, Turner J, Vay JL, Voter AF, Windus TL, Yelick K.

Philos Trans A Math Phys Eng Sci. 2020 Mar 6;378(2166):20190056. doi: 10.1098/rsta.2019.0056. Epub 2020 Jan 20.


Paramedic Global Impression of Change During Prehospital Evaluation and Transport for Acute Stroke.

Shkirkova K, Schuberg S, Balouzian E, Starkman S, Eckstein M, Stratton S, Pratt FD, Hamilton S, Sharma L, Liebeskind DS, Conwit R, Saver JL, Sanossian N; FAST-MAG Investigators and Coordinators.

Stroke. 2020 Jan 20:STROKEAHA119026392. doi: 10.1161/STROKEAHA.119.026392. [Epub ahead of print]


The Timing and Nature of Behavioural Responses Affect the Course of an Epidemic.

Tyson RC, Hamilton SD, Lo AS, Baumgaertner BO, Krone SM.

Bull Math Biol. 2020 Jan 14;82(1):14. doi: 10.1007/s11538-019-00684-z.


Trametinib activity in patients with solid tumors and lymphomas harboring BRAF non-V600 mutations or fusions: results from NCI-MATCH (EAY131).

Johnson DB, Zhao F, Noel MS, Riely GJ, Mitchell EP, Wright JJ, Chen HX, Gray RJ, Li S, McShane LM, Rubinstein L, Patton D, Williams M, Hamilton SR, Conley BA, Arteaga CL, Harris LN, O'Dwyer PJ, Chen AP, Flaherty KT.

Clin Cancer Res. 2020 Jan 10. pii: clincanres.3443.2019. doi: 10.1158/1078-0432.CCR-19-3443. [Epub ahead of print]



Flaherty KT, Gray R, Chen A, Li S, Patton D, Hamilton SR, Williams PM, Mitchell EP, Iafrate AJ, Sklar J, Harris LN, McShane LM, Rubinstein LV, Sims DJ, Routbort M, Coffey B, Fu T, Zwiebel JA, Little RF, Marinucci D, Catalano R, Magnan R, Kibbe W, Weil C, Tricoli JV, Alexander B, Kumar S, Schwartz GK, Meric-Bernstam F, Lih CJ, McCaskill-Stevens W, Caimi P, Takebe N, Datta V, Arteaga CL, Abrams JS, Comis R, O'Dwyer PJ, Conley BA; NCI-MATCH Team.

J Natl Cancer Inst. 2020 Jan 10. pii: djz245. doi: 10.1093/jnci/djz245. [Epub ahead of print]


A rare case of cutaneous basal cell carcinosarcoma in an immunosuppressed patient.

Davis K, Whale K, Tran S, Hamilton S, Kandamany N.

Pathology. 2020 Jan 6. pii: S0031-3025(19)30445-3. doi: 10.1016/j.pathol.2019.10.011. [Epub ahead of print] No abstract available.


Influence of protogynous sex change on recovery of fish populations within marine protected areas.

Easter EE, Adreani MS, Hamilton SL, Steele MA, Pang S, White JW.

Ecol Appl. 2020 Jan 6. doi: 10.1002/eap.2070. [Epub ahead of print]


Physiologic Mechanisms of Type II Diabetes Mellitus Remission Following Bariatric Surgery: a Meta-analysis and Clinical Implications.

Russel SM, Valle V, Spagni G, Hamilton S, Patel T, Abdukadyrov N, Dong Y, Gangemi A.

J Gastrointest Surg. 2020 Jan 2. doi: 10.1007/s11605-019-04508-2. [Epub ahead of print] Review.


rAAVrh74.MCK.GALGT2 Demonstrates Safety and Widespread Muscle Glycosylation after Intravenous Delivery in C57BL/6J Mice.

Zygmunt DA, Xu R, Jia Y, Ashbrook A, Menke C, Shao G, Yoon JH, Hamilton S, Pisharath H, Bolon B, Martin PT.

Mol Ther Methods Clin Dev. 2019 Oct 21;15:305-319. doi: 10.1016/j.omtm.2019.10.005. eCollection 2019 Dec 13.


Intergroup Randomized Phase III Study of Postoperative Oxaliplatin, 5-Fluorouracil, and Leucovorin Versus Oxaliplatin, 5-Fluorouracil, Leucovorin, and Bevacizumab for Patients with Stage II or III Rectal Cancer Receiving Preoperative Chemoradiation: A Trial of the ECOG-ACRIN Research Group (E5204).

Chakravarthy AB, Zhao F, Meropol NJ, Flynn PJ, Wagner LI, Sloan J, Diasio RB, Mitchell EP, Catalano P, Giantonio BJ, Catalano RB, Haller DG, Awan RA, Mulcahy MF, O'Brien TE, Santala R, Cripps C, Weis JR, Atkins JN, Leichman CG, Petrelli NJ, Sinicrope FA, Brierley JD, Tepper JE, O'Dwyer PJ, Sigurdson ER, Hamilton SR, Cella D, Benson AB 3rd.

Oncologist. 2019 Dec 18. pii: theoncologist.2019-0437. doi: 10.1634/theoncologist.2019-0437. [Epub ahead of print]


Attitudes and perceptions of people with a learning disability, family carers, and paid care workers towards cancer screening programmes in the United Kingdom: A qualitative systematic review and meta-aggregation.

Byrnes K, Hamilton S, McGeechan GJ, O'Malley C, Mankelow J, Giles EL.

Psychooncology. 2019 Dec 13. doi: 10.1002/pon.5311. [Epub ahead of print] Review.


Nivolumab Is Effective in Mismatch Repair-Deficient Noncolorectal Cancers: Results From Arm Z1D-A Subprotocol of the NCI-MATCH (EAY131) Study.

Azad NS, Gray RJ, Overman MJ, Schoenfeld JD, Mitchell EP, Zwiebel JA, Sharon E, Streicher H, Li S, McShane LM, Rubinstein L, Patton DR, Williams PM, Coffey B, Hamilton SR, Bahary N, Suga JM, Hatoum H, Abrams JS, Conley BA, Arteaga CL, Harris L, O'Dwyer PJ, Chen AP, Flaherty KT.

J Clin Oncol. 2020 Jan 20;38(3):214-222. doi: 10.1200/JCO.19.00818. Epub 2019 Nov 25.


A retrospective study of patients with Robin sequence: Patient characteristics and their impact on clinical outcomes.

Hamilton S, Dzioba A, Husein M.

Int J Pediatr Otorhinolaryngol. 2020 Feb;129:109769. doi: 10.1016/j.ijporl.2019.109769. Epub 2019 Nov 7.


Limnological effects of a large Amazonian run-of-river dam on the main river and drowned tributary valleys.

Almeida RM, Hamilton SK, Rosi EJ, Arantes JD Jr, Barros N, Boemer G, Gripp A, Huszar VLM, Junger PC, Lima M, Pacheco F, Carvalho D, Reisinger AJ, Silva LHS, Roland F.

Sci Rep. 2019 Nov 14;9(1):16846. doi: 10.1038/s41598-019-53060-1.


Interleukin 1 alpha administration is neuroprotective and neuro-restorative following experimental ischemic stroke.

Salmeron KE, Maniskas ME, Edwards DN, Wong R, Rajkovic I, Trout A, Rahman AA, Hamilton S, Fraser JF, Pinteaux E, Bix GJ.

J Neuroinflammation. 2019 Nov 14;16(1):222. doi: 10.1186/s12974-019-1599-9.


Prevalence of self-reported mental disorders in pregnancy and associations with adverse neonatal outcomes: a population-based cross-sectional study.

Mongan D, Lynch J, Hanna D, Shannon C, Hamilton S, Potter C, Gorman C, McCambridge O, Morrow R, Mulholland C.

BMC Pregnancy Childbirth. 2019 Nov 8;19(1):412. doi: 10.1186/s12884-019-2572-4.


Disability "In-Justice": The Benefits and Challenges of "Yarning" With Young People Undergoing Diagnostic Assessment for Fetal Alcohol Spectrum Disorder in a Youth Detention Center.

Hamilton S, Reibel T, Maslen S, Watkins R, Jacinta F, Passmore H, Mutch R, O'Donnell M, Braithwaite V, Bower C.

Qual Health Res. 2020 Jan;30(2):314-327. doi: 10.1177/1049732319882910. Epub 2019 Nov 6.


Measuring and Assessing Healthcare Organisational Culture in the England's National Health Service: A Snapshot of Current Tools and Tool Use.

Simpson D, Hamilton S, McSherry R, McIntosh R.

Healthcare (Basel). 2019 Nov 1;7(4). pii: E127. doi: 10.3390/healthcare7040127.


Time Course of Changes in Peripheral Blood Gene Expression During Medication Treatment for Major Depressive Disorder.

Cook IA, Congdon E, Krantz DE, Hunter AM, Coppola G, Hamilton SP, Leuchter AF.

Front Genet. 2019 Sep 18;10:870. doi: 10.3389/fgene.2019.00870. eCollection 2019.


Pharmacologic Treatment for Older Children with ADHD.

Hamilton S.

Am Fam Physician. 2019 Oct 15;100(8):455-456. No abstract available.


A wild microbiome improves mouse modeling of the human immune response.

Hamilton SE, Griffith TS.

Lab Anim (NY). 2019 Nov;48(11):337-338. doi: 10.1038/s41684-019-0421-8. No abstract available.


Combining spore germination and heat inactivation to decontaminate materials contaminated with Bacillus anthracis spores.

Buhr TL, Minter ZA, Kennihan NL, Young AA, Borgers-Klonkowski EL, Osborn EB, Bohmke MD, Hamilton SM, Kimani MB, Miller CT, Mackie RS, Innocenti JM, Bensman MD, Lilly SD.

J Appl Microbiol. 2020 Jan;128(1):124-137. doi: 10.1111/jam.14474. Epub 2019 Nov 3.


IMT SIM: beyond the realms of resuscitation and -procedures.

Huntley C, Wheeler J, Kerks J, Hamilton S, Szuszman A, Dainty P, Barlow R.

Future Healthc J. 2019 Jun;6(Suppl 2):34. doi: 10.7861/futurehosp.6-2s-s34. No abstract available.


Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression.

Glanville KP, Coleman JRI, Hanscombe KB, Euesden J, Choi SW, Purves KL, Breen G, Air TM, Andlauer TFM, Baune BT, Binder EB, Blackwood DHR, Boomsma DI, Buttenschøn HN, Colodro-Conde L, Dannlowski U, Direk N, Dunn EC, Forstner AJ, de Geus EJC, Grabe HJ, Hamilton SP, Jones I, Jones LA, Knowles JA, Kutalik Z, Levinson DF, Lewis G, Lind PA, Lucae S, Magnusson PK, McGuffin P, McIntosh AM, Milaneschi Y, Mors O, Mostafavi S, Müller-Myhsok B, Pedersen NL, Penninx BWJH, Potash JB, Preisig M, Ripke S, Shi J, Shyn SI, Smoller JW, Streit F, Sullivan PF, Tiemeier H, Uher R, Van der Auwera S, Weissman MM; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, O'Reilly PF, Lewis CM.

Biol Psychiatry. 2019 Aug 5. pii: S0006-3223(19)31558-6. doi: 10.1016/j.biopsych.2019.06.031. [Epub ahead of print]


NK Cell IL-10 Production Requires IL-15 and IL-10 Driven STAT3 Activation.

Clark SE, Burrack KS, Jameson SC, Hamilton SE, Lenz LL.

Front Immunol. 2019 Sep 4;10:2087. doi: 10.3389/fimmu.2019.02087. eCollection 2019.


Rationale and population-based prospective cohort protocol for the disadvantaged populations at risk of decline in eGFR (CO-DEGREE).

Gonzalez-Quiroz M, Nitsch D, Hamilton S, O'Callaghan Gordo C, Saran R, Glaser J, Correa-Rotter R, Jakobsson K, Singh A, Gunawardena N, Levin A, Remuzzi G, Caplin B, Pearce N; DEGREE Study Steering Committee.

BMJ Open. 2019 Sep 24;9(9):e031169. doi: 10.1136/bmjopen-2019-031169.


Reducing greenhouse gas emissions of Amazon hydropower with strategic dam planning.

Almeida RM, Shi Q, Gomes-Selman JM, Wu X, Xue Y, Angarita H, Barros N, Forsberg BR, García-Villacorta R, Hamilton SK, Melack JM, Montoya M, Perez G, Sethi SA, Gomes CP, Flecker AS.

Nat Commun. 2019 Sep 19;10(1):4281. doi: 10.1038/s41467-019-12179-5.


Contributions of natural killer cells to the immune response against Plasmodium.

Burrack KS, Hart GT, Hamilton SE.

Malar J. 2019 Sep 18;18(1):321. doi: 10.1186/s12936-019-2953-1. Review.


Effects of multiple climate change stressors on gene expression in blue rockfish (Sebastes mystinus).

Cline AJ, Hamilton SL, Logan CA.

Comp Biochem Physiol A Mol Integr Physiol. 2020 Jan;239:110580. doi: 10.1016/j.cbpa.2019.110580. Epub 2019 Sep 15.


Deubiquitinase Otub1 negatively regulates IL-15 signaling in CD8 T cells and NK cells.

Huggins MA, Hamilton SE.

Cell Mol Immunol. 2019 Nov;16(11):846-847. doi: 10.1038/s41423-019-0283-4. Epub 2019 Sep 11. No abstract available.


Ado-trastuzumab emtansine (T-DM1) in patients with HER2-amplified tumors excluding breast and gastric/gastroesophageal junction (GEJ) adenocarcinomas: results from the NCI-MATCH trial (EAY131) subprotocol Q.

Jhaveri KL, Wang XV, Makker V, Luoh SW, Mitchell EP, Zwiebel JA, Sharon E, Gray RJ, Li S, McShane LM, Rubinstein LV, Patton D, Williams PM, Hamilton SR, Conley BA, Arteaga CL, Harris LN, O'Dwyer PJ, Chen AP, Flaherty KT.

Ann Oncol. 2019 Nov 1;30(11):1821-1830. doi: 10.1093/annonc/mdz291.


NCCN Guidelines Insights: Genetic/Familial High-Risk Assessment: Colorectal, Version 2.2019.

Gupta S, Provenzale D, Llor X, Halverson AL, Grady W, Chung DC, Haraldsdottir S, Markowitz AJ, Slavin TP Jr, Hampel H; CGC, Ness RM, Weiss JM, Ahnen DJ, Chen LM, Cooper G, Early DS, Giardiello FM, Hall MJ, Hamilton SR, Kanth P, Klapman JB, Lazenby AJ, Lynch PM, Mayer RJ, Mikkelson J; CGC, Peter S, Regenbogen SE, Dwyer MA; CGC, Ogba N.

J Natl Compr Canc Netw. 2019 Sep 1;17(9):1032-1041. doi: 10.6004/jnccn.2019.0044.


Foraging consistency of coral reef fishes across environmental gradients in the central Pacific.

Zgliczynski BJ, Williams GJ, Hamilton SL, Cordner EG, Fox MD, Eynaud Y, Michener RH, Kaufman LS, Sandin SA.

Oecologia. 2019 Oct;191(2):433-445. doi: 10.1007/s00442-019-04496-9. Epub 2019 Sep 4.


Microbial Exposure Enhances Immunity to Pathogens Recognized by TLR2 but Increases Susceptibility to Cytokine Storm through TLR4 Sensitization.

Huggins MA, Sjaastad FV, Pierson M, Kucaba TA, Swanson W, Staley C, Weingarden AR, Jensen IJ, Danahy DB, Badovinac VP, Jameson SC, Vezys V, Masopust D, Khoruts A, Griffith TS, Hamilton SE.

Cell Rep. 2019 Aug 13;28(7):1729-1743.e5. doi: 10.1016/j.celrep.2019.07.028.


Critical review of the TransCelerate Template for clinical study reports (CSRs) and publication of Version 2 of the CORE Reference (Clarity and Openness in Reporting: E3-based) Terminology Table.

Hamilton S, Bernstein AB, Blakey G, Fagan V, Farrow T, Jordan D, Seiler W, Gertel A; Budapest Working Group [BWG].

Res Integr Peer Rev. 2019 Aug 5;4:16. doi: 10.1186/s41073-019-0075-5. eCollection 2019. Review.


Signet ring cell colorectal cancer: genomic insights into a rare subpopulation of colorectal adenocarcinoma.

Korphaisarn K, Morris V, Davis JS, Overman MJ, Fogelman DR, Kee BK, Dasari A, Raghav KPS, Shureiqi I, Trupti M, Wolff RA, Eng C, Menter DG, Hamilton S, Kopetz S.

Br J Cancer. 2019 Sep;121(6):505-510. doi: 10.1038/s41416-019-0548-9. Epub 2019 Aug 13.


Prenatal chromosomal microarray testing of fetuses with ultrasound structural anomalies: A prospective cohort study of over 1000 consecutive cases.

Chong HP, Hamilton S, Mone F, Cheung KW, Togneri FS, Morris RK, Quinlan-Jones E, Williams D, Allen S, McMullan DJ, Kilby MD.

Prenat Diagn. 2019 Nov;39(12):1064-1069. doi: 10.1002/pd.5545. Epub 2019 Aug 22.


A Wearable Platform for Research in Augmented Hearing.

Pisha L, Hamilton S, Sengupta D, Lee CH, Vastare KC, Zubatiy T, Luna S, Yalcin C, Grant A, Gupta R, Chockalingam G, Rao BD, Garudadri H.

Conf Rec Asilomar Conf Signals Syst Comput. 2018 Oct;2018:223-227. doi: 10.1109/ACSSC.2018.8645557. Epub 2019 Feb 21.


Subject Retention in Prehospital Stroke Research Using a Telephone-Based Physician-Investigator Driven Enrollment Method.

Rosell BJ, Shkirkova K, Saver JL, Liebeskind DS, Starkman S, Kim-Tenser M, Eckstein M, Sharma L, Conwit R, Hamilton S, Sanossian N.

Cerebrovasc Dis Extra. 2019;9(2):72-76. doi: 10.1159/000500851. Epub 2019 Jul 25.


Outbreak of Serratia marcescens bacteremia in pediatric patients epidemiologically linked to pre-filled heparin flushes.

West K, Janelle S, Schutz K, Hamilton S, Mayo K, Cichon MK, Nyquist AC, Bamberg WM, Dominguez SR.

Infect Control Hosp Epidemiol. 2019 Oct;40(10):1201-1202. doi: 10.1017/ice.2019.196. Epub 2019 Jul 25. No abstract available.


Websites, Websites Everywhere: How Thyroid Cancer Patients Use the Internet.

Chang K, Berthelet E, Grubbs E, Hamilton S, Karvat A, Tran E, Wu J, Ingledew PA.

J Cancer Educ. 2019 Jul 22. doi: 10.1007/s13187-019-01576-5. [Epub ahead of print]


Widespread diminishing anthropogenic effects on calcium in freshwaters.

Weyhenmeyer GA, Hartmann J, Hessen DO, Kopáček J, Hejzlar J, Jacquet S, Hamilton SK, Verburg P, Leach TH, Schmid M, Flaim G, Nõges T, Nõges P, Wentzky VC, Rogora M, Rusak JA, Kosten S, Paterson AM, Teubner K, Higgins SN, Lawrence G, Kangur K, Kokorite I, Cerasino L, Funk C, Harvey R, Moatar F, de Wit HA, Zechmeister T.

Sci Rep. 2019 Jul 18;9(1):10450. doi: 10.1038/s41598-019-46838-w.


Maternally expressed gene 3 in metabolic programming.

Hamilton S, de Cabo R, Bernier M.

Biochim Biophys Acta Gene Regul Mech. 2019 Jul 1:194396. doi: 10.1016/j.bbagrm.2019.06.007. [Epub ahead of print] Review.


Patient-Derived Cytomegaloviruses with Different Ganciclovir Sensitivities from UL97 Mutation Retain Their Replication Efficiency and Some Kinase Activity In Vitro.

Wong DD, van Zuylen WJ, Hamilton ST, Steingruber M, Sonntag E, Marschall M, Rawlinson WD.

Antimicrob Agents Chemother. 2019 Aug 23;63(9). pii: e02425-18. doi: 10.1128/AAC.02425-18. Print 2019 Sep.


Australian community health practitioners' knowledge and experience with managing urinary incontinence that begins in childhood.

Caldwell PH, Manocha R, Hamilton S, Scott KM, Barnes EH.

Aust J Gen Pract. 2019 Jan-Feb;48(1-2):60-65. doi: 10.31128/AJGP-08-18-4682.


Large-alphabet encoding for higher-rate quantum key distribution.

Lee C, Bunandar D, Zhang Z, Steinbrecher GR, Ben Dixon P, Wong FNC, Shapiro JH, Hamilton SA, Englund D.

Opt Express. 2019 Jun 24;27(13):17539-17549. doi: 10.1364/OE.27.017539.


The Functional Requirement for CD69 in Establishment of Resident Memory CD8+ T Cells Varies with Tissue Location.

Walsh DA, Borges da Silva H, Beura LK, Peng C, Hamilton SE, Masopust D, Jameson SC.

J Immunol. 2019 Aug 15;203(4):946-955. doi: 10.4049/jimmunol.1900052. Epub 2019 Jun 26.


Creating a Just Culture: The Ottawa Hospital's experience.

Forster AJ, Hamilton S, Hayes T, Légaré R.

Healthc Manage Forum. 2019 Sep;32(5):266-271. doi: 10.1177/0840470419853303. Epub 2019 Jun 25.


Primary organ preservation vs total laryngectomy for T4a larynx cancer.

Oh J, Prisman E, Olson R, Berthelet E, Wu J, Tran E, Bakos B, Kaviani R, Hamilton SN.

Head Neck. 2019 Sep;41(9):3265-3275. doi: 10.1002/hed.25838. Epub 2019 Jun 19.


Polymeric Composites with Silver (I) Cyanoximates Inhibit Biofilm Formation of Gram-Positive and Gram-Negative Bacteria.

Lotlikar SR, Gallaway E, Grant T, Popis S, Whited M, Guragain M, Rogers R, Hamilton S, Gerasimchuk NG, Patrauchan MA.

Polymers (Basel). 2019 Jun 9;11(6). pii: E1018. doi: 10.3390/polym11061018.

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