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Brown Rice, a Diet Rich in Health Promoting Properties.

Lee JS, Sreenivasulu N, Hamilton RS, Kohli A.

J Nutr Sci Vitaminol (Tokyo). 2019;65(Supplement):S26-S28. doi: 10.3177/jnsv.65.S26.


Trophoblast organoids as a model for maternal-fetal interactions during human placentation.

Turco MY, Gardner L, Kay RG, Hamilton RS, Prater M, Hollinshead MS, McWhinnie A, Esposito L, Fernando R, Skelton H, Reimann F, Gribble FM, Sharkey A, Marsh SGE, O'Rahilly S, Hemberger M, Burton GJ, Moffett A.

Nature. 2018 Dec;564(7735):263-267. doi: 10.1038/s41586-018-0753-3. Epub 2018 Nov 28.


Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice.

Bacon WA, Hamilton RS, Yu Z, Kieckbusch J, Hawkes D, Krzak AM, Abell C, Colucci F, Charnock-Jones DS.

Front Immunol. 2018 Nov 1;9:2523. doi: 10.3389/fimmu.2018.02523. eCollection 2018.


Molecular definition of group 1 innate lymphoid cells in the mouse uterus.

Filipovic I, Chiossone L, Vacca P, Hamilton RS, Ingegnere T, Doisne JM, Hawkes DA, Mingari MC, Sharkey AM, Moretta L, Colucci F.

Nat Commun. 2018 Oct 29;9(1):4492. doi: 10.1038/s41467-018-06918-3.


Genomic variation in 3,010 diverse accessions of Asian cultivated rice.

Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, Sun C, Fu B, Zhang H, Gao Y, Zhao X, Shen F, Cui X, Yu H, Li Z, Chen M, Detras J, Zhou Y, Zhang X, Zhao Y, Kudrna D, Wang C, Li R, Jia B, Lu J, He X, Dong Z, Xu J, Li Y, Wang M, Shi J, Li J, Zhang D, Lee S, Hu W, Poliakov A, Dubchak I, Ulat VJ, Borja FN, Mendoza JR, Ali J, Li J, Gao Q, Niu Y, Yue Z, Naredo MEB, Talag J, Wang X, Li J, Fang X, Yin Y, Glaszmann JC, Zhang J, Li J, Hamilton RS, Wing RA, Ruan J, Zhang G, Wei C, Alexandrov N, McNally KL, Li Z, Leung H.

Nature. 2018 May;557(7703):43-49. doi: 10.1038/s41586-018-0063-9. Epub 2018 Apr 25.


Erratum to: Population dynamics among six major groups of the Oryza rufipogon species complex, wild relative of cultivated Asian rice.

Kim H, Jung J, Singh N, Greenberg A, Doyle JJ, Tyagi W, Chung JW, Kimball J, Hamilton RS, McCouch SR.

Rice (N Y). 2017 Dec;10(1):17. doi: 10.1186/s12284-017-0156-3. Epub 2017 Apr 26. No abstract available.


Exploring RNA conformational space under sparse distance restraints.

Taylor WR, Hamilton RS.

Sci Rep. 2017 Mar 10;7:44074. doi: 10.1038/srep44074.


Rice SNP-seek database update: new SNPs, indels, and queries.

Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, McNally KL, Alexandrov N.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1075-D1081. doi: 10.1093/nar/gkw1135. Epub 2016 Nov 29.


Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice.

Kim H, Jung J, Singh N, Greenberg A, Doyle JJ, Tyagi W, Chung JW, Kimball J, Hamilton RS, McCouch SR.

Rice (N Y). 2016 Dec;9(1):56. doi: 10.1186/s12284-016-0119-0. Epub 2016 Oct 12. Erratum in: Rice (N Y). 2017 Dec;10 (1):17.


Plant Genetic Resources: Needs, Rights, and Opportunities.

Roa C, Hamilton RS, Wenzl P, Powell W.

Trends Plant Sci. 2016 Aug;21(8):633-636. doi: 10.1016/j.tplants.2016.06.002. Epub 2016 Jul 12. Review.


Identification of stable QTLs causing chalk in rice grains in nine environments.

Zhao X, Daygon VD, McNally KL, Hamilton RS, Xie F, Reinke RF, Fitzgerald MA.

Theor Appl Genet. 2016 Jan;129(1):141-53.


Functional consequences of 17q21.31/WNT3-WNT9B amplification in hPSCs with respect to neural differentiation.

Lee CT, Bendriem RM, Kindberg AA, Worden LT, Williams MP, Drgon T, Mallon BS, Harvey BK, Richie CT, Hamilton RS, Chen J, Errico SL, Tsai SY, Uhl GR, Freed WJ.

Cell Rep. 2015 Feb 3;10(4):616-32. doi: 10.1016/j.celrep.2014.12.050. Epub 2015 Jan 29.


SNP-Seek database of SNPs derived from 3000 rice genomes.

Alexandrov N, Tai S, Wang W, Mansueto L, Palis K, Fuentes RR, Ulat VJ, Chebotarov D, Zhang G, Li Z, Mauleon R, Hamilton RS, McNally KL.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1023-7. doi: 10.1093/nar/gku1039. Epub 2014 Nov 27.


Syncrip/hnRNP Q influences synaptic transmission and regulates BMP signaling at the Drosophila neuromuscular synapse.

Halstead JM, Lin YQ, Durraine L, Hamilton RS, Ball G, Neely GG, Bellen HJ, Davis I.

Biol Open. 2014 Aug 29;3(9):839-49. doi: 10.1242/bio.20149027.


Drosophila Syncrip modulates the expression of mRNAs encoding key synaptic proteins required for morphology at the neuromuscular junction.

McDermott SM, Yang L, Halstead JM, Hamilton RS, Meignin C, Davis I.

RNA. 2014 Oct;20(10):1593-606. doi: 10.1261/rna.045849.114. Epub 2014 Aug 29.


Alternative cultures for human pluripotent stem cell production, maintenance, and genetic analysis.

Chen KG, Hamilton RS, Robey PG, Mallon BS.

J Vis Exp. 2014 Jul 24;(89). doi: 10.3791/51519.


Directed differentiation of human induced pluripotent stem cells toward bone and cartilage: in vitro versus in vivo assays.

Phillips MD, Kuznetsov SA, Cherman N, Park K, Chen KG, McClendon BN, Hamilton RS, McKay RD, Chenoweth JG, Mallon BS, Robey PG.

Stem Cells Transl Med. 2014 Jul;3(7):867-78. doi: 10.5966/sctm.2013-0154. Epub 2014 May 22.


Developmental insights from early mammalian embryos and core signaling pathways that influence human pluripotent cell growth and differentiation.

Chen KG, Mallon BS, Johnson KR, Hamilton RS, McKay RD, Robey PG.

Stem Cell Res. 2014 May;12(3):610-21. doi: 10.1016/j.scr.2014.02.002. Epub 2014 Feb 19. Review.


Comparison of the molecular profiles of human embryonic and induced pluripotent stem cells of isogenic origin.

Mallon BS, Hamilton RS, Kozhich OA, Johnson KR, Fann YC, Rao MS, Robey PG.

Stem Cell Res. 2014 Mar;12(2):376-86. doi: 10.1016/j.scr.2013.11.010. Epub 2013 Dec 4.


Agriculture: Feeding the future.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D.

Nature. 2013 Jul 4;499(7456):23-4. doi: 10.1038/499023a. No abstract available.


Prediction of contacts from correlated sequence substitutions.

Taylor WR, Hamilton RS, Sadowski MI.

Curr Opin Struct Biol. 2013 Jun;23(3):473-9. doi: 10.1016/ Epub 2013 May 14. Review.


Co-regulated expression of alpha and beta mRNAs encoding HLA-DR surface heterodimers is mediated by the MHCII RNA operon.

Pisapia L, Cicatiello V, Barba P, Malanga D, Maffei A, Hamilton RS, Del Pozzo G.

Nucleic Acids Res. 2013 Apr 1;41(6):3772-86. doi: 10.1093/nar/gkt059. Epub 2013 Feb 7.


StemCellDB: the human pluripotent stem cell database at the National Institutes of Health.

Mallon BS, Chenoweth JG, Johnson KR, Hamilton RS, Tesar PJ, Yavatkar AS, Tyson LJ, Park K, Chen KG, Fann YC, McKay RD.

Stem Cell Res. 2013 Jan;10(1):57-66. doi: 10.1016/j.scr.2012.09.002. Epub 2012 Sep 26.


Non-colony type monolayer culture of human embryonic stem cells.

Chen KG, Mallon BS, Hamilton RS, Kozhich OA, Park K, Hoeppner DJ, Robey PG, McKay RD.

Stem Cell Res. 2012 Nov;9(3):237-48. doi: 10.1016/j.scr.2012.06.003. Epub 2012 Jun 28.


Regulation and expression of the ATP-binding cassette transporter ABCG2 in human embryonic stem cells.

Padmanabhan R, Chen KG, Gillet JP, Handley M, Mallon BS, Hamilton RS, Park K, Varma S, Mehaffey MG, Robey PG, McKay RD, Gottesman MM.

Stem Cells. 2012 Oct;30(10):2175-87. doi: 10.1002/stem.1195.


The mitosis and neurodevelopment proteins NDE1 and NDEL1 form dimers, tetramers, and polymers with a folded back structure in solution.

Soares DC, Bradshaw NJ, Zou J, Kennaway CK, Hamilton RS, Chen ZA, Wear MA, Blackburn EA, Bramham J, Böttcher B, Millar JK, Barlow PN, Walkinshaw MD, Rappsilber J, Porteous DJ.

J Biol Chem. 2012 Sep 21;287(39):32381-93. Epub 2012 Jul 27.


Standardized generation and differentiation of neural precursor cells from human pluripotent stem cells.

Kozhich OA, Hamilton RS, Mallon BS.

Stem Cell Rev Rep. 2013 Aug;9(4):531-6. doi: 10.1007/s12015-012-9357-8.


A cell biologist's guide to high resolution imaging.

Ball G, Parton RM, Hamilton RS, Davis I.

Methods Enzymol. 2012;504:29-55. doi: 10.1016/B978-0-12-391857-4.00002-1.


A PAR-1-dependent orientation gradient of dynamic microtubules directs posterior cargo transport in the Drosophila oocyte.

Parton RM, Hamilton RS, Ball G, Yang L, Cullen CF, Lu W, Ohkura H, Davis I.

J Cell Biol. 2011 Jul 11;194(1):121-35. doi: 10.1083/jcb.201103160.


Identifying and searching for conserved RNA localisation signals.

Hamilton RS, Davis I.

Methods Mol Biol. 2011;714:447-66. doi: 10.1007/978-1-61779-005-8_27.


ParticleStats: open source software for the analysis of particle motility and cytoskeletal polarity.

Hamilton RS, Parton RM, Oliveira RA, Vendra G, Ball G, Nasmyth K, Davis I.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W641-6. doi: 10.1093/nar/gkq542. Epub 2010 Jun 11.


Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei.

Oliveira RA, Hamilton RS, Pauli A, Davis I, Nasmyth K.

Nat Cell Biol. 2010 Feb;12(2):185-92. doi: 10.1038/ncb2018. Epub 2010 Jan 17.


Development of a core set from a large rice collection using a modified heuristic algorithm to retain maximum diversity.

Chung HK, Kim KW, Chung JW, Lee JR, Lee SY, Dixit A, Kang HK, Zhao W, McNally KL, Hamilton RS, Gwag JG, Park YJ.

J Integr Plant Biol. 2009 Dec;51(12):1116-25. doi: 10.1111/j.1744-7909.2009.00882.x.


Building a scientific data grid with DiGS.

Beckett MG, Allton CR, Davies CT, Davis I, Flynn JM, Grant EJ, Hamilton RS, Irving AC, Kenway RD, Ostrowski RH, Perry JT, Swedlow JR, Trew A.

Philos Trans A Math Phys Eng Sci. 2009 Jun 28;367(1897):2471-81. doi: 10.1098/rsta.2009.0050.


A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons.

Hamilton RS, Hartswood E, Vendra G, Jones C, Van De Bor V, Finnegan D, Davis I.

RNA. 2009 Feb;15(2):200-7. doi: 10.1261/rna.1264109.


A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder.

Pickard BS, Knight HM, Hamilton RS, Soares DC, Walker R, Boyd JK, Machell J, Maclean A, McGhee KA, Condie A, Porteous DJ, St Clair D, Davis I, Blackwood DH, Muir WJ.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14940-5. doi: 10.1073/pnas.0800643105. Epub 2008 Sep 29.


Dynactin suppresses the retrograde movement of apically localized mRNA in Drosophila blastoderm embryos.

Vendra G, Hamilton RS, Davis I.

RNA. 2007 Nov;13(11):1860-7. Epub 2007 Sep 27.


Characterization of human embryonic stem cell lines by the International Stem Cell Initiative.

International Stem Cell Initiative, Adewumi O, Aflatoonian B, Ahrlund-Richter L, Amit M, Andrews PW, Beighton G, Bello PA, Benvenisty N, Berry LS, Bevan S, Blum B, Brooking J, Chen KG, Choo AB, Churchill GA, Corbel M, Damjanov I, Draper JS, Dvorak P, Emanuelsson K, Fleck RA, Ford A, Gertow K, Gertsenstein M, Gokhale PJ, Hamilton RS, Hampl A, Healy LE, Hovatta O, Hyllner J, Imreh MP, Itskovitz-Eldor J, Jackson J, Johnson JL, Jones M, Kee K, King BL, Knowles BB, Lako M, Lebrin F, Mallon BS, Manning D, Mayshar Y, McKay RD, Michalska AE, Mikkola M, Mileikovsky M, Minger SL, Moore HD, Mummery CL, Nagy A, Nakatsuji N, O'Brien CM, Oh SK, Olsson C, Otonkoski T, Park KY, Passier R, Patel H, Patel M, Pedersen R, Pera MF, Piekarczyk MS, Pera RA, Reubinoff BE, Robins AJ, Rossant J, Rugg-Gunn P, Schulz TC, Semb H, Sherrer ES, Siemen H, Stacey GN, Stojkovic M, Suemori H, Szatkiewicz J, Turetsky T, Tuuri T, van den Brink S, Vintersten K, Vuoristo S, Ward D, Weaver TA, Young LA, Zhang W.

Nat Biotechnol. 2007 Jul;25(7):803-16. Epub 2007 Jun 17.


RNA localization signals: deciphering the message with bioinformatics.

Hamilton RS, Davis I.

Semin Cell Dev Biol. 2007 Apr;18(2):178-85. Epub 2007 Feb 12. Review.


Toward xeno-free culture of human embryonic stem cells.

Mallon BS, Park KY, Chen KG, Hamilton RS, McKay RD.

Int J Biochem Cell Biol. 2006;38(7):1063-75. Epub 2006 Jan 23. Review.


Debate over a GM rice trial in China.

Heong KL, Chen YH, Johnson DE, Jahn GC, Hossain M, Hamilton RS.

Science. 2005 Oct 14;310(5746):231-3; author reply 231-3. No abstract available.


A Cdk5 inhibitory peptide reduces tau hyperphosphorylation and apoptosis in neurons.

Zheng YL, Kesavapany S, Gravell M, Hamilton RS, Schubert M, Amin N, Albers W, Grant P, Pant HC.

EMBO J. 2005 Jan 12;24(1):209-20. Epub 2004 Dec 9.


A Lagrangian model of the evolution of the particulate size distribution of vehicular emissions.

Clarke AG, Robertson LA, Hamilton RS, Gorbunov B.

Sci Total Environ. 2004 Dec 1;334-335:197-206.


Carbon monoxide exposure from cooking in snow caves at high altitude.

Keyes LE, Hamilton RS, Rose JS.

Wilderness Environ Med. 2001 Fall;12(3):208-12.


Effect of surgical cricothyrotomy on the unstable cervical spine in a cadaver model of intubation.

Gerling MC, Davis DP, Hamilton RS, Morris GF, Vilke GM, Garfin SR, Hayden SR.

J Emerg Med. 2001 Jan;20(1):1-5.


Effects of cervical spine immobilization technique and laryngoscope blade selection on an unstable cervical spine in a cadaver model of intubation.

Gerling MC, Davis DP, Hamilton RS, Morris GF, Vilke GM, Garfin SR, Hayden SR.

Ann Emerg Med. 2000 Oct;36(4):293-300.


Safety and efficacy of the Rapid Four-Step Technique for cricothyrotomy using a Bair Claw.

Davis DP, Bramwell KJ, Hamilton RS, Chan TC, Vilke GM.

J Emerg Med. 2000 Aug;19(2):125-9.


Phenylpropanolamine-associated intracranial hemorrhage in an infant.

Hamilton RS, Sharieff G.

Am J Emerg Med. 2000 May;18(3):343-5. No abstract available.


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