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Affective calculus: The construction of affect through information integration over time.

Asutay E, Genevsky A, Barrett LF, Hamilton JP, Slovic P, Västfjäll D.

Emotion. 2019 Oct 24. doi: 10.1037/emo0000681. [Epub ahead of print]


Hepatitis C-positive donor liver transplantation for hepatitis C seronegative recipients.

Ting PS, Hamilton JP, Gurakar A, Urrunaga NH, Ma M, Glorioso J, King E, Toman LP, Wesson R, Garonzik-Wang J, Ottmann S, Philosophe B, Sulkowski M, Cameron AM, Durand CM, Chen PH.

Transpl Infect Dis. 2019 Dec;21(6):e13194. doi: 10.1111/tid.13194. Epub 2019 Oct 30.


Detection of Novel Fusion Transcript VTI1A-CFAP46 in Hepatocellular Carcinoma.

Tsuge S, Saberi B, Cheng Y, Wang Z, Kim A, Luu H, Abraham JM, Ybanez MD, Hamilton JP, Selaru FM, Villacorta-Martin C, Schlesinger F, Philosophe B, Cameron AM, Zhu Q, Anders R, Gurakar A, Meltzer SJ.

Gastrointest Tumors. 2019 Aug;6(1-2):11-27. doi: 10.1159/000496795. Epub 2019 Apr 10.


Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.].

Gemenet DC, da Silva Pereira G, De Boeck B, Wood JC, Mollinari M, Olukolu BA, Diaz F, Mosquera V, Ssali RT, David M, Kitavi MN, Burgos G, Felde TZ, Ghislain M, Carey E, Swanckaert J, Coin LJM, Fei Z, Hamilton JP, Yada B, Yencho GC, Zeng ZB, Mwanga ROM, Khan A, Gruneberg WJ, Buell CR.

Theor Appl Genet. 2020 Jan;133(1):23-36. doi: 10.1007/s00122-019-03437-7. Epub 2019 Oct 8.


Brain Changes Induced by Electroconvulsive Therapy Are Broadly Distributed.

Ousdal OT, Argyelan M, Narr KL, Abbott C, Wade B, Vandenbulcke M, Urretavizcaya M, Tendolkar I, Takamiya A, Stek ML, Soriano-Mas C, Redlich R, Paulson OB, Oudega ML, Opel N, Nordanskog P, Kishimoto T, Kampe R, Jorgensen A, Hanson LG, Hamilton JP, Espinoza R, Emsell L, van Eijndhoven P, Dols A, Dannlowski U, Cardoner N, Bouckaert F, Anand A, Bartsch H, Kessler U, Oedegaard KJ, Dale AM, Oltedal L; GEMRIC.

Biol Psychiatry. 2020 Mar 1;87(5):451-461. doi: 10.1016/j.biopsych.2019.07.010. Epub 2019 Jul 25.


Brain-based Classification of Negative Social Bias in Adolescents With Nonsuicidal Self-injury: Findings From Simulated Online Social Interaction.

Perini I, Gustafsson PA, Hamilton JP, Kämpe R, Mayo LM, Heilig M, Zetterqvist M.

EClinicalMedicine. 2019 Jul 6;13:81-90. doi: 10.1016/j.eclinm.2019.06.016. eCollection 2019 Aug.


Over-the-scope clip as salvage therapy in refractory bleeding from esophageal variceal band ligation-induced ulcer.

Lopimpisuth C, Kerdsirichairat T, Khoshknab MP, Hamilton JP, Ngamruengphong S.

Endoscopy. 2020 Jan;52(1):E33-E34. doi: 10.1055/a-0983-8230. Epub 2019 Aug 21. No abstract available.


Genome-wide Inference of Somatic Translocation Events During Potato Dihaploid Production.

Pham GM, Braz GT, Conway M, Crisovan E, Hamilton JP, Laimbeer FPE, Manrique-Carpintero N, Newton L, Douches DS, Jiang J, Veilleux RE, Buell CR.

Plant Genome. 2019 Jun;12(2). doi: 10.3835/plantgenome2018.10.0079.


Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel.

Gage JL, Vaillancourt B, Hamilton JP, Manrique-Carpintero NC, Gustafson TJ, Barry K, Lipzen A, Tracy WF, Mikel MA, Kaeppler SM, Buell CR, de Leon N.

Plant Genome. 2019 Jun;12(2). doi: 10.3835/plantgenome2018.09.0069.


Touch aversion in patients with interpersonal traumatization.

Strauss T, Rottstädt F, Sailer U, Schellong J, Hamilton JP, Raue C, Weidner K, Croy I.

Depress Anxiety. 2019 Jul;36(7):635-646. doi: 10.1002/da.22914. Epub 2019 Jun 17.


Functional Connectivity Between Extrastriate Body Area and Default Mode Network Predicts Depersonalization Symptoms in Major Depression: Findings From an A Priori Specified Multinetwork Comparison.

Paul ER, Farmer M, Kämpe R, Cremers HR, Hamilton JP.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2019 Jul;4(7):627-635. doi: 10.1016/j.bpsc.2019.03.007. Epub 2019 Mar 29.


Hepatic fibrosis: Avenues of investigation and clinical implications.

Shay JES, Hamilton JP.

Clin Liver Dis (Hoboken). 2018 Jun 5;11(5):111-114. doi: 10.1002/cld.702. eCollection 2018 May. Review. No abstract available.



LoPiccolo J, Brener MI, Oshima K, Lipson EJ, Hamilton JP.

Hepatology. 2019 Jun;69(6):2718-2719. doi: 10.1002/hep.30595. No abstract available.


Deactivation of default mode network during touch.

Strauss T, Kämpe R, Hamilton JP, Olausson H, Rottstädt F, Raue C, Croy I.

Sci Rep. 2019 Feb 4;9(1):1293. doi: 10.1038/s41598-018-37597-1.


A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways.

Zhao D, Hamilton JP, Bhat WW, Johnson SR, Godden GT, Kinser TJ, Boachon B, Dudareva N, Soltis DE, Soltis PS, Hamberger B, Buell CR.

Gigascience. 2019 Mar 1;8(3). pii: giz005. doi: 10.1093/gigascience/giz005.


Identification of a bilirubin receptor that may mediate a component of cholestatic itch.

Meixiong J, Vasavda C, Green D, Zheng Q, Qi L, Kwatra SG, Hamilton JP, Snyder SH, Dong X.

Elife. 2019 Jan 21;8. pii: e44116. doi: 10.7554/eLife.44116.


An updated gene atlas for maize reveals organ-specific and stress-induced genes.

Hoopes GM, Hamilton JP, Wood JC, Esteban E, Pasha A, Vaillancourt B, Provart NJ, Buell CR.

Plant J. 2019 Mar;97(6):1154-1167. doi: 10.1111/tpj.14184. Epub 2019 Jan 22.


Striatal dopamine deficits predict reductions in striatal functional connectivity in major depression: a concurrent 11C-raclopride positron emission tomography and functional magnetic resonance imaging investigation.

Hamilton JP, Sacchet MD, Hjørnevik T, Chin FT, Shen B, Kämpe R, Park JH, Knutson BD, Williams LM, Borg N, Zaharchuk G, Camacho MC, Mackey S, Heilig M, Drevets WC, Glover GH, Gambhir SS, Gotlib IH.

Transl Psychiatry. 2018 Nov 30;8(1):264. doi: 10.1038/s41398-018-0316-2.


Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement.

Wu S, Lau KH, Cao Q, Hamilton JP, Sun H, Zhou C, Eserman L, Gemenet DC, Olukolu BA, Wang H, Crisovan E, Godden GT, Jiao C, Wang X, Kitavi M, Manrique-Carpintero N, Vaillancourt B, Wiegert-Rininger K, Yang X, Bao K, Schaff J, Kreuze J, Gruneberg W, Khan A, Ghislain M, Ma D, Jiang J, Mwanga ROM, Leebens-Mack J, Coin LJM, Yencho GC, Buell CR, Fei Z.

Nat Commun. 2018 Nov 2;9(1):4580. doi: 10.1038/s41467-018-06983-8.


Coffee consumption and liver-related hospitalizations and deaths in the ARIC study.

Hu EA, Lazo M, Selvin E, Hamilton JP, Grams ME, Steffen LM, Coresh J, Rebholz CM.

Eur J Clin Nutr. 2019 Aug;73(8):1133-1140. doi: 10.1038/s41430-018-0346-0. Epub 2018 Oct 19.


Gene Discovery in Gelsemium Highlights Conserved Gene Clusters in Monoterpene Indole Alkaloid Biosynthesis.

Franke J, Kim J, Hamilton JP, Zhao D, Pham GM, Wiegert-Rininger K, Crisovan E, Newton L, Vaillancourt B, Tatsis E, Buell CR, O'Connor SE.

Chembiochem. 2019 Jan 2;20(1):83-87. doi: 10.1002/cbic.201800592. Epub 2018 Nov 13.


Nodular Regenerative Hyperplasia Associated With Immune Checkpoint Blockade.

LoPiccolo J, Brener MI, Oshima K, Lipson EJ, Hamilton JP.

Hepatology. 2018 Dec;68(6):2431-2433. doi: 10.1002/hep.30157. Epub 2018 Nov 5. No abstract available.


Reply to Huang et al.: Avoiding "one-size-fits-all" approaches to variant discovery.

Hardigan MA, Laimbeer FPE, Hamilton JP, Vaillancourt B, Douches DS, Farré EM, Veilleux RE, Buell CR.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6394-E6395. doi: 10.1073/pnas.1807622115. Epub 2018 Jun 22. No abstract available.


The salience of self, not social pain, is encoded by dorsal anterior cingulate and insula.

Perini I, Gustafsson PA, Hamilton JP, Kämpe R, Zetterqvist M, Heilig M.

Sci Rep. 2018 Apr 18;8(1):6165. doi: 10.1038/s41598-018-24658-8.


Distinct Neural-Functional Effects of Treatments With Selective Serotonin Reuptake Inhibitors, Electroconvulsive Therapy, and Transcranial Magnetic Stimulation and Their Relations to Regional Brain Function in Major Depression: A Meta-analysis.

Chau DT, Fogelman P, Nordanskog P, Drevets WC, Hamilton JP.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2017 May;2(4):318-326. doi: 10.1016/j.bpsc.2017.01.003. Epub 2017 Jan 26.


The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum.

Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N.

Nucleic Acids Res. 2018 Mar 16;46(5):2700. doi: 10.1093/nar/gky091. No abstract available.


Genome sequence of M6, a diploid inbred clone of the high-glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity.

Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR.

Plant J. 2018 May;94(3):562-570. doi: 10.1111/tpj.13857. Epub 2018 Mar 22. Erratum in: Plant J. 2018 Oct;96(2):482.


Role of nucleoside/nucleotide analogues and low-dose hepatitis B immune globülin in prophylaxis of hepatitis B recurrence among cadaveric liver transplant recipients.

Ajayi T, Luu H, Saberi B, Hamilton JP, Konduk BT, Özşeker B, Al Khalloufi K, Pustavoitau A, Philosophe B, Cameron AM, Gürakar A.

Turk J Gastroenterol. 2018 Jan;29(1):61-66. doi: 10.5152/tjg.2018.17595.


The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum.

Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N.

Nucleic Acids Res. 2018 Mar 16;46(5):2380-2397. doi: 10.1093/nar/gky025. Erratum in: Nucleic Acids Res. 2018 Mar 16;46(5):2700.


Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anticancer and Antimalarial Cardenolides.

Hoopes GM, Hamilton JP, Kim J, Zhao D, Wiegert-Rininger K, Crisovan E, Buell CR.

G3 (Bethesda). 2018 Feb 2;8(2):385-391. doi: 10.1534/g3.117.300331.


Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato.

Hardigan MA, Laimbeer FPE, Newton L, Crisovan E, Hamilton JP, Vaillancourt B, Wiegert-Rininger K, Wood JC, Douches DS, Farré EM, Veilleux RE, Buell CR.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):E9999-E10008. doi: 10.1073/pnas.1714380114. Epub 2017 Oct 30.


Pregnancy in Wilson disease.

Rabiee A, Hamilton JPA.

Hepatology. 2018 Apr;67(4):1201-1203. doi: 10.1002/hep.29619. Epub 2018 Feb 20. No abstract available.


De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin.

Zhao D, Hamilton JP, Pham GM, Crisovan E, Wiegert-Rininger K, Vaillancourt B, DellaPenna D, Buell CR.

Gigascience. 2017 Sep 1;6(9):1-7. doi: 10.1093/gigascience/gix065.


Utilization of hepatitis C virus RNA-positive donor liver for transplant to hepatitis C virus RNA-negative recipient.

Saberi B, Hamilton JP, Durand CM, Li Z, Philosophe B, Cameron AM, Sulkowski MS, Gurakar A.

Liver Transpl. 2018 Jan;24(1):140-143. doi: 10.1002/lt.24838. No abstract available.


Statistical differences in the white matter tracts in subjects with depression by using different skeletonized voxel-wise analysis approaches and DTI fitting procedures.

Bergamino M, Farmer M, Yeh HW, Paul E, Hamilton JP.

Brain Res. 2017 Aug 15;1669:131-140. doi: 10.1016/j.brainres.2017.06.013. Epub 2017 Jun 16.


Targeted inactivation of copper transporter Atp7b in hepatocytes causes liver steatosis and obesity in mice.

Muchenditsi A, Yang H, Hamilton JP, Koganti L, Housseau F, Aronov L, Fan H, Pierson H, Bhattacharjee A, Murphy R, Sears C, Potter J, Wooton-Kee CR, Lutsenko S.

Am J Physiol Gastrointest Liver Physiol. 2017 Jul 1;313(1):G39-G49. doi: 10.1152/ajpgi.00312.2016. Epub 2017 Apr 20.


The GABAB Positive Allosteric Modulator ADX71441 Attenuates Alcohol Self-Administration and Relapse to Alcohol Seeking in Rats.

Augier E, Dulman RS, Damadzic R, Pilling A, Hamilton JP, Heilig M.

Neuropsychopharmacology. 2017 Aug;42(9):1789-1799. doi: 10.1038/npp.2017.53. Epub 2017 Mar 15.


Pre- Versus Posttransplant Treatment of Hepatitis C Virus With Direct-Acting Antivirals in Liver Transplant Recipients: More Issues to be Solved.

Abdelqader A, Kabacam G, Woreta TA, Hamilton JP, Luu H, Al Khalloufi K, Saberi B, Philosophe B, Cameron AM, Gurakar A.

Exp Clin Transplant. 2017 Feb;15(Suppl 1):1-5.


Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays.

Langlois PA, Snelling J, Hamilton JP, Bragard C, Koebnik R, Verdier V, Triplett LR, Blom J, Tisserat NA, Leach JE.

Phytopathology. 2017 May;107(5):519-527. doi: 10.1094/PHYTO-08-16-0286-R. Epub 2017 Mar 28.


Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation.

Zhao D, Hamilton JP, Hardigan M, Yin D, He T, Vaillancourt B, Reynoso M, Pauluzzi G, Funkhouser S, Cui Y, Bailey-Serres J, Jiang J, Buell CR, Jiang N.

G3 (Bethesda). 2017 Jan 5;7(1):203-219. doi: 10.1534/g3.116.036020.


Cognitive and neural consequences of memory suppression in major depressive disorder.

Sacchet MD, Levy BJ, Hamilton JP, Maksimovskiy A, Hertel PT, Joormann J, Anderson MC, Wagner AD, Gotlib IH.

Cogn Affect Behav Neurosci. 2017 Feb;17(1):77-93. doi: 10.3758/s13415-016-0464-x.


Unexplained ascites.

Hernaez R, Hamilton JP.

Clin Liver Dis (Hoboken). 2016 Mar 29;7(3):53-56. doi: 10.1002/cld.537. eCollection 2016 Mar. Review. No abstract available.


Applying a free-water correction to diffusion imaging data uncovers stress-related neural pathology in depression.

Bergamino M, Pasternak O, Farmer M, Shenton ME, Hamilton JP.

Neuroimage Clin. 2015 Nov 30;10:336-42. doi: 10.1016/j.nicl.2015.11.020. eCollection 2016.


Effects of salience-network-node neurofeedback training on affective biases in major depressive disorder.

Hamilton JP, Glover GH, Bagarinao E, Chang C, Mackey S, Sacchet MD, Gotlib IH.

Psychiatry Res Neuroimaging. 2016 Mar 30;249:91-6. doi: 10.1016/j.pscychresns.2016.01.016. Epub 2016 Jan 19.


Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.

Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA.

PLoS One. 2016 Jan 20;11(1):e0147229. doi: 10.1371/journal.pone.0147229. eCollection 2016.


Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum.

Hardigan MA, Crisovan E, Hamilton JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang X, Zeng Z, Douches DS, Jiang J, Veilleux RE, Buell CR.

Plant Cell. 2016 Feb;28(2):388-405. doi: 10.1105/tpc.15.00538. Epub 2016 Jan 15.


Systemic PEGylated TRAIL treatment ameliorates liver cirrhosis in rats by eliminating activated hepatic stellate cells.

Oh Y, Park O, Swierczewska M, Hamilton JP, Park JS, Kim TH, Lim SM, Eom H, Jo DG, Lee CE, Kechrid R, Mastorakos P, Zhang C, Hahn SK, Jeon OC, Byun Y, Kim K, Hanes J, Lee KC, Pomper MG, Gao B, Lee S.

Hepatology. 2016 Jul;64(1):209-23. doi: 10.1002/hep.28432. Epub 2016 Mar 3.


Activation of liver X receptor/retinoid X receptor pathway ameliorates liver disease in Atp7B(-/-) (Wilson disease) mice.

Hamilton JP, Koganti L, Muchenditsi A, Pendyala VS, Huso D, Hankin J, Murphy RC, Huster D, Merle U, Mangels C, Yang N, Potter JJ, Mezey E, Lutsenko S.

Hepatology. 2016 Jun;63(6):1828-41. doi: 10.1002/hep.28406. Epub 2016 Feb 22.


Deregulation of energy metabolism promotes antifibrotic effects in human hepatic stellate cells and prevents liver fibrosis in a mouse model.

Karthikeyan S, Potter JJ, Geschwind JF, Sur S, Hamilton JP, Vogelstein B, Kinzler KW, Mezey E, Ganapathy-Kanniappan S.

Biochem Biophys Res Commun. 2016 Jan 15;469(3):463-9. doi: 10.1016/j.bbrc.2015.10.101. Epub 2015 Oct 23.


A neural substrate for behavioral inhibition in the risk for major depressive disorder.

Frost Bellgowan J, Molfese P, Marx M, Thomason M, Glen D, Santiago J, Gotlib IH, Drevets WC, Hamilton JP.

J Am Acad Child Adolesc Psychiatry. 2015 Oct;54(10):841-8. doi: 10.1016/j.jaac.2015.08.001. Epub 2015 Aug 20.


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