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Expansion of LINEs and species-specific DNA repeats drives genome expansion in Asian Gypsy Moths.

Hebert FO, Freschi L, Blackburn G, Béliveau C, Dewar K, Boyle B, Gundersen-Rindal DE, Sparks ME, Cusson M, Hamelin RC, Levesque RC.

Sci Rep. 2019 Nov 11;9(1):16413. doi: 10.1038/s41598-019-52840-z.


Lysozyme-Induced Transcriptional Regulation of TNF-α Pathway Genes in Cells of the Monocyte Lineage.

Bergamo A, Gerdol M, Pallavicini A, Greco S, Schepens I, Hamelin R, Armand F, Dyson PJ, Sava G.

Int J Mol Sci. 2019 Nov 5;20(21). pii: E5502. doi: 10.3390/ijms20215502.


Population genomic analyses reveal connectivity via human-mediated transport across Populus plantations in North America and an undescribed sub-population of Sphaerulina musiva.

Tabima JF, Sondreli K, Kerio S, Feau N, Sakalidis ML, Hamelin R, Leboldus J.

Mol Plant Microbe Interact. 2019 Oct 8. doi: 10.1094/MPMI-05-19-0131-R. [Epub ahead of print]


Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene.

Dhillon B, Kema GHJ, Hamelin RC, Bluhm BH, Goodwin SB.

Mob DNA. 2019 Aug 27;10:37. doi: 10.1186/s13100-019-0177-0. eCollection 2019.


Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum.

Grünwald NJ, LeBoldus JM, Hamelin RC.

Annu Rev Phytopathol. 2019 Aug 25;57:301-321. doi: 10.1146/annurev-phyto-082718-100117. Epub 2019 Jun 21.


Mycorrhiza: Genotype Assignment using Phylogenetic Networks.

Georges-Filteau J, Hamelin RC, Blanchette M.

Bioinformatics. 2019 Jun 14. pii: btz476. doi: 10.1093/bioinformatics/btz476. [Epub ahead of print]


Phosphorylation of the VAR2CSA extracellular region is associated with enhanced adhesive properties to the placental receptor CSA.

Dorin-Semblat D, Tétard M, Claës A, Semblat JP, Dechavanne S, Fourati Z, Hamelin R, Armand F, Matesic G, Nunes-Silva S, Srivastava A, Gangnard S, Lopez-Rubio JJ, Moniatte M, Doerig C, Scherf A, Gamain B.

PLoS Biol. 2019 Jun 10;17(6):e3000308. doi: 10.1371/journal.pbio.3000308. eCollection 2019 Jun.


Molecular Profiling and Functional Analysis of Macrophage-Derived Tumor Extracellular Vesicles.

Cianciaruso C, Beltraminelli T, Duval F, Nassiri S, Hamelin R, Mozes A, Gallart-Ayala H, Ceada Torres G, Torchia B, Ries CH, Ivanisevic J, De Palma M.

Cell Rep. 2019 Jun 4;27(10):3062-3080.e11. doi: 10.1016/j.celrep.2019.05.008.


Tumor-associated factors are enriched in lymphatic exudate compared to plasma in metastatic melanoma patients.

Broggi MAS, Maillat L, Clement CC, Bordry N, Corthésy P, Auger A, Matter M, Hamelin R, Potin L, Demurtas D, Romano E, Harari A, Speiser DE, Santambrogio L, Swartz MA.

J Exp Med. 2019 May 6;216(5):1091-1107. doi: 10.1084/jem.20181618. Epub 2019 Apr 11.


Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum.

Dale AL, Feau N, Everhart SE, Dhillon B, Wong B, Sheppard J, Bilodeau GJ, Brar A, Tabima JF, Shen D, Brasier CM, Tyler BM, Grünwald NJ, Hamelin RC.

MBio. 2019 Mar 12;10(2). pii: e02452-18. doi: 10.1128/mBio.02452-18.


Genome-enhanced detection and identification of fungal pathogens responsible for pine and poplar rust diseases.

Bergeron MJ, Feau N, Stewart D, Tanguay P, Hamelin RC.

PLoS One. 2019 Feb 6;14(2):e0210952. doi: 10.1371/journal.pone.0210952. eCollection 2019.


Analysis of the S. pombe Meiotic Proteome Reveals a Switch from Anabolic to Catabolic Processes and Extensive Post-transcriptional Regulation.

Krapp A, Hamelin R, Armand F, Chiappe D, Krapp L, Cano E, Moniatte M, Simanis V.

Cell Rep. 2019 Jan 22;26(4):1044-1058.e5. doi: 10.1016/j.celrep.2018.12.075.


An Overview of Canadian Research Activities on Diseases Caused by Phytophthora ramorum: Results, Progress, and Challenges.

Shamoun SF, Rioux D, Callan B, James D, Hamelin RC, Bilodeau GJ, Elliott M, Lévesque CA, Becker E, McKenney D, Pedlar J, Bailey K, Brière SC, Niquidet K, Allen E.

Plant Dis. 2018 Jul;102(7):1218-1233. doi: 10.1094/PDIS-11-17-1730-FE. Epub 2018 Jun 7. Review.


Author Correction: Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus.

McKown AD, Klápště J, Guy RD, Soolanayakanahally RY, La Mantia J, Porth I, Skyba O, Unda F, Douglas CJ, El-Kassaby YA, Hamelin RC, Mansfield SD, Cronk QCB.

Sci Rep. 2018 Nov 22;8(1):17410. doi: 10.1038/s41598-018-35443-y.


Cryptic Speciation in Western North America and Eastern Eurasia of the Pathogens Responsible for Laminated Root Rot.

Leal I, Bergeron MJ, Feau N, Tsui CKM, Foord B, Pellow K, Hamelin RC, Sturrock RN.

Phytopathology. 2019 Mar;109(3):456-468. doi: 10.1094/PHYTO-12-17-0399-R. Epub 2019 Jan 7.


The Membrane-Bound C Subunit of Reductive Dehalogenases: Topology Analysis and Reconstitution of the FMN-Binding Domain of PceC.

Buttet GF, Willemin MS, Hamelin R, Rupakula A, Maillard J.

Front Microbiol. 2018 Apr 24;9:755. doi: 10.3389/fmicb.2018.00755. eCollection 2018.


Genome-Enhanced Detection and Identification (GEDI) of plant pathogens.

Feau N, Beauseigle S, Bergeron MJ, Bilodeau GJ, Birol I, Cervantes-Arango S, Dhillon B, Dale AL, Herath P, Jones SJM, Lamarche J, Ojeda DI, Sakalidis ML, Taylor G, Tsui CKM, Uzunovic A, Yueh H, Tanguay P, Hamelin RC.

PeerJ. 2018 Feb 22;6:e4392. doi: 10.7717/peerj.4392. eCollection 2018.


Comparative analysis of mitochondrial genomes of geographic variants of the gypsy moth, Lymantria dispar, reveals a previously undescribed genotypic entity.

Djoumad A, Nisole A, Zahiri R, Freschi L, Picq S, Gundersen-Rindal DE, Sparks ME, Dewar K, Stewart D, Maaroufi H, Levesque RC, Hamelin RC, Cusson M.

Sci Rep. 2017 Oct 27;7(1):14245. doi: 10.1038/s41598-017-14530-6.


Overexpression of AtGolS3 and CsRFS in poplar enhances ROS tolerance and represses defense response to leaf rust disease.

La Mantia J, Unda F, Douglas CJ, Mansfield SD, Hamelin R.

Tree Physiol. 2018 Mar 1;38(3):457-470. doi: 10.1093/treephys/tpx100.


Identification of Chlamydomonas Central Core Centriolar Proteins Reveals a Role for Human WDR90 in Ciliogenesis.

Hamel V, Steib E, Hamelin R, Armand F, Borgers S, Flückiger I, Busso C, Olieric N, Sorzano COS, Steinmetz MO, Guichard P, Gönczy P.

Curr Biol. 2017 Aug 21;27(16):2486-2498.e6. doi: 10.1016/j.cub.2017.07.011. Epub 2017 Aug 3.


Say hello to my little friends: how microbiota can modulate tree health.

Feau N, Hamelin RC.

New Phytol. 2017 Jul;215(2):508-510. doi: 10.1111/nph.14649. No abstract available.


Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus .

McKown AD, Klápště J, Guy RD, Soolanayakanahally RY, La Mantia J, Porth I, Skyba O, Unda F, Douglas CJ, El-Kassaby YA, Hamelin RC, Mansfield SD, Cronk QCB.

Sci Rep. 2017 May 12;7(1):1831. doi: 10.1038/s41598-017-01893-z. Erratum in: Sci Rep. 2018 Nov 22;8(1):17410.


Development and Validation of Polymorphic Microsatellite Loci for the NA2 Lineage of Phytophthora ramorum from Whole Genome Sequence Data.

Gagnon MC, Feau N, Dale AL, Dhillon B, Hamelin RC, Brasier CM, Grünwald NJ, Brière SC, Bilodeau GJ.

Plant Dis. 2017 May;101(5):666-673. doi: 10.1094/PDIS-11-16-1586-RE. Epub 2017 Mar 16.


Genetic and genomic evidence of niche partitioning and adaptive radiation in mountain pine beetle fungal symbionts.

Ojeda Alayon DI, Tsui CK, Feau N, Capron A, Dhillon B, Zhang Y, Massoumi Alamouti S, Boone CK, Carroll AL, Cooke JE, Roe AD, Sperling FA, Hamelin RC.

Mol Ecol. 2017 Apr;26(7):2077-2091. doi: 10.1111/mec.14074. Epub 2017 Mar 22.


Differential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics.

Reckel S, Hamelin R, Georgeon S, Armand F, Jolliet Q, Chiappe D, Moniatte M, Hantschel O.

Leukemia. 2017 Jul;31(7):1502-1512. doi: 10.1038/leu.2017.36. Epub 2017 Jan 23.


Primary Human and Rat β-Cells Release the Intracellular Autoantigens GAD65, IA-2, and Proinsulin in Exosomes Together With Cytokine-Induced Enhancers of Immunity.

Cianciaruso C, Phelps EA, Pasquier M, Hamelin R, Demurtas D, Alibashe Ahmed M, Piemonti L, Hirosue S, Swartz MA, De Palma M, Hubbell JA, Baekkeskov S.

Diabetes. 2017 Feb;66(2):460-473. doi: 10.2337/db16-0671. Epub 2016 Nov 21.


Genome sequences of six Phytophthora species threatening forest ecosystems.

Feau N, Taylor G, Dale AL, Dhillon B, Bilodeau GJ, Birol I, Jones SJ, Hamelin RC.

Genom Data. 2016 Oct 3;10:85-88. eCollection 2016 Dec.


A Multi-Species TaqMan PCR Assay for the Identification of Asian Gypsy Moths (Lymantria spp.) and Other Invasive Lymantriines of Biosecurity Concern to North America.

Stewart D, Zahiri R, Djoumad A, Freschi L, Lamarche J, Holden D, Cervantes S, Ojeda DI, Potvin A, Nisole A, Béliveau C, Capron A, Kimoto T, Day B, Yueh H, Duff C, Levesque RC, Hamelin RC, Cusson M.

PLoS One. 2016 Aug 11;11(8):e0160878. doi: 10.1371/journal.pone.0160878. eCollection 2016.


Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.

Arango Isaza RE, Diaz-Trujillo C, Dhillon B, Aerts A, Carlier J, Crane CF, V de Jong T, de Vries I, Dietrich R, Farmer AD, Fortes Fereira C, Garcia S, Guzman M, Hamelin RC, Lindquist EA, Mehrabi R, Quiros O, Schmutz J, Shapiro H, Reynolds E, Scalliet G, Souza M Jr, Stergiopoulos I, Van der Lee TA, De Wit PJ, Zapater MF, Zwiers LH, Grigoriev IV, Goodwin SB, Kema GH.

PLoS Genet. 2016 Aug 11;12(8):e1005876. doi: 10.1371/journal.pgen.1005876. eCollection 2016 Aug. Erratum in: PLoS Genet. 2016 Oct 4;12 (10 ):e1006365.


HSP110 T17 simplifies and improves the microsatellite instability testing in patients with colorectal cancer.

Buhard O, Lagrange A, Guilloux A, Colas C, Chouchène M, Wanherdrick K, Coulet F, Guillerm E, Dorard C, Marisa L, Bokhari A, Greene M, El-Murr N, Bodo S, Muleris M, Sourouille I, Svrcek M, Cervera P, Blanché H, Lefevre JH, Parc Y, Lepage C, Chapusot C, Bouvier AM, Gaub MP, Selves J, Garrett K, Iacopetta B, Soong R, Hamelin R, Garrido C, Lascols O, André T, Fléjou JF, Collura A, Duval A.

J Med Genet. 2016 Jun;53(6):377-84. doi: 10.1136/jmedgenet-2015-103518. Epub 2016 Feb 1.


Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2015 Dec 22;11(12):e1005775. doi: 10.1371/journal.pgen.1005775. eCollection 2015 Dec. No abstract available.


Malaria Parasite-Infected Erythrocytes Secrete PfCK1, the Plasmodium Homologue of the Pleiotropic Protein Kinase Casein Kinase 1.

Dorin-Semblat D, Demarta-Gatsi C, Hamelin R, Armand F, Carvalho TG, Moniatte M, Doerig C.

PLoS One. 2015 Dec 2;10(12):e0139591. doi: 10.1371/journal.pone.0139591. eCollection 2015.


Evolutionary Quantitative Genomics of Populus trichocarpa.

Porth I, Klápště J, McKown AD, La Mantia J, Guy RD, Ingvarsson PK, Hamelin R, Mansfield SD, Ehlting J, Douglas CJ, El-Kassaby YA.

PLoS One. 2015 Nov 23;10(11):e0142864. doi: 10.1371/journal.pone.0142864. eCollection 2015.


Molecular Detection of 10 of the Most Unwanted Alien Forest Pathogens in Canada Using Real-Time PCR.

Lamarche J, Potvin A, Pelletier G, Stewart D, Feau N, Alayon DI, Dale AL, Coelho A, Uzunovic A, Bilodeau GJ, Brière SC, Hamelin RC, Tanguay P.

PLoS One. 2015 Aug 14;10(8):e0134265. doi: 10.1371/journal.pone.0134265. eCollection 2015.


Diagnosis of Constitutional Mismatch Repair-Deficiency Syndrome Based on Microsatellite Instability and Lymphocyte Tolerance to Methylating Agents.

Bodo S, Colas C, Buhard O, Collura A, Tinat J, Lavoine N, Guilloux A, Chalastanis A, Lafitte P, Coulet F, Buisine MP, Ilencikova D, Ruiz-Ponte C, Kinzel M, Grandjouan S, Brems H, Lejeune S, Blanché H, Wang Q, Caron O, Cabaret O, Svrcek M, Vidaud D, Parfait B, Verloes A, Knappe UJ, Soubrier F, Mortemousque I, Leis A, Auclair-Perrossier J, Frébourg T, Fléjou JF, Entz-Werle N, Leclerc J, Malka D, Cohen-Haguenauer O, Goldberg Y, Gerdes AM, Fedhila F, Mathieu-Dramard M, Hamelin R, Wafaa B, Gauthier-Villars M, Bourdeaut F, Sheridan E, Vasen H, Brugières L, Wimmer K, Muleris M, Duval A; European Consortium “Care for CMMRD”.

Gastroenterology. 2015 Oct;149(4):1017-29.e3. doi: 10.1053/j.gastro.2015.06.013. Epub 2015 Jun 25.


Colonization history, host distribution, anthropogenic influence and landscape features shape populations of white pine blister rust, an invasive alien tree pathogen.

Brar S, Tsui CK, Dhillon B, Bergeron MJ, Joly DL, Zambino PJ, El-Kassaby YA, Hamelin RC.

PLoS One. 2015 May 26;10(5):e0127916. doi: 10.1371/journal.pone.0127916. eCollection 2015.


Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen.

Dhillon B, Feau N, Aerts AL, Beauseigle S, Bernier L, Copeland A, Foster A, Gill N, Henrissat B, Herath P, LaButti KM, Levasseur A, Lindquist EA, Majoor E, Ohm RA, Pangilinan JL, Pribowo A, Saddler JN, Sakalidis ML, de Vries RP, Grigoriev IV, Goodwin SB, Tanguay P, Hamelin RC.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3451-6. doi: 10.1073/pnas.1424293112. Epub 2015 Mar 2.


The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola.

Dhillon B, Gill N, Hamelin RC, Goodwin SB.

BMC Genomics. 2014 Dec 17;15:1132. doi: 10.1186/1471-2164-15-1132.


Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis.

Teixeira Mde M, Rodrigues AM, Tsui CK, de Almeida LG, Van Diepeningen AD, van den Ende BG, Fernandes GF, Kano R, Hamelin RC, Lopes-Bezerra LM, Vasconcelos AT, de Hoog S, de Camargo ZP, Felipe MS.

Eukaryot Cell. 2015 Feb;14(2):158-69. doi: 10.1128/EC.00153-14. Epub 2014 Dec 5.


Identification of new Presenilin-1 phosphosites: implication for γ-secretase activity and Aβ production.

Matz A, Halamoda-Kenzaoui B, Hamelin R, Mosser S, Alattia JR, Dimitrov M, Moniatte M, Fraering PC.

J Neurochem. 2015 May;133(3):409-21. doi: 10.1111/jnc.12996. Epub 2015 Feb 24.


A mammalian transcription factor-specific peptide repository for targeted proteomics.

Simicevic J, Moniatte M, Hamelin R, Ahrné E, Deplancke B.

Proteomics. 2015 Feb;15(4):752-6. doi: 10.1002/pmic.201400355. Epub 2015 Jan 14.


Association genetics, geography and ecophysiology link stomatal patterning in Populus trichocarpa with carbon gain and disease resistance trade-offs.

McKown AD, Guy RD, Quamme L, Klápště J, La Mantia J, Constabel CP, El-Kassaby YA, Hamelin RC, Zifkin M, Azam MS.

Mol Ecol. 2014 Dec;23(23):5771-90. doi: 10.1111/mec.12969. Epub 2014 Nov 8.


The MAT1-1:MAT1-2 ratio of Sporothrix globosa isolates in Japan.

Kano R, Tsui CK, Hamelin RC, Anzawa K, Mochizuki T, Nishimoto K, Hiruma M, Kamata H, Hasegawa A.

Mycopathologia. 2015 Feb;179(1-2):81-6. doi: 10.1007/s11046-014-9808-7. Epub 2014 Sep 18.


Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens.

Dalla Vecchia E, Shao PP, Suvorova E, Chiappe D, Hamelin R, Bernier-Latmani R.

Front Microbiol. 2014 Aug 19;5:432. doi: 10.3389/fmicb.2014.00432. eCollection 2014.


Population structure of mountain pine beetle symbiont Leptographium longiclavatum and the implication on the multipartite beetle-fungi relationships.

Tsui CK, Farfan L, Roe AD, Rice AV, Cooke JE, El-Kassaby YA, Hamelin RC.

PLoS One. 2014 Aug 25;9(8):e105455. doi: 10.1371/journal.pone.0105455. eCollection 2014.


Duplications and losses in gene families of rust pathogens highlight putative effectors.

Pendleton AL, Smith KE, Feau N, Martin FM, Grigoriev IV, Hamelin R, Nelson CD, Burleigh JG, Davis JM.

Front Plant Sci. 2014 Jun 26;5:299. doi: 10.3389/fpls.2014.00299. eCollection 2014.


Quantitative mass spectrometry reveals plasticity of metabolic networks in Mycobacterium smegmatis.

Chopra T, Hamelin R, Armand F, Chiappe D, Moniatte M, McKinney JD.

Mol Cell Proteomics. 2014 Nov;13(11):3014-28. doi: 10.1074/mcp.M113.034082. Epub 2014 Jul 5.


Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.

Schoch CL, Robbertse B, Robert V, Vu D, Cardinali G, Irinyi L, Meyer W, Nilsson RH, Hughes K, Miller AN, Kirk PM, Abarenkov K, Aime MC, Ariyawansa HA, Bidartondo M, Boekhout T, Buyck B, Cai Q, Chen J, Crespo A, Crous PW, Damm U, De Beer ZW, Dentinger BT, Divakar PK, Dueñas M, Feau N, Fliegerova K, García MA, Ge ZW, Griffith GW, Groenewald JZ, Groenewald M, Grube M, Gryzenhout M, Gueidan C, Guo L, Hambleton S, Hamelin R, Hansen K, Hofstetter V, Hong SB, Houbraken J, Hyde KD, Inderbitzin P, Johnston PR, Karunarathna SC, Kõljalg U, Kovács GM, Kraichak E, Krizsan K, Kurtzman CP, Larsson KH, Leavitt S, Letcher PM, Liimatainen K, Liu JK, Lodge DJ, Luangsa-ard JJ, Lumbsch HT, Maharachchikumbura SS, Manamgoda D, Martín MP, Minnis AM, Moncalvo JM, Mulè G, Nakasone KK, Niskanen T, Olariaga I, Papp T, Petkovits T, Pino-Bodas R, Powell MJ, Raja HA, Redecker D, Sarmiento-Ramirez JM, Seifert KA, Shrestha B, Stenroos S, Stielow B, Suh SO, Tanaka K, Tedersoo L, Telleria MT, Udayanga D, Untereiner WA, Diéguez Uribeondo J, Subbarao KV, Vágvölgyi C, Visagie C, Voigt K, Walker DM, Weir BS, Weiß M, Wijayawardene NN, Wingfield MJ, Xu JP, Yang ZL, Zhang N, Zhuang WY, Federhen S.

Database (Oxford). 2014 Jun 30;2014. pii: bau061. doi: 10.1093/database/bau061. Print 2014.


Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.

Porth I, Klápste J, McKown AD, La Mantia J, Hamelin RC, Skyba O, Unda F, Friedmann MC, Cronk QC, Ehlting J, Guy RD, Mansfield SD, El-Kassaby YA, Douglas CJ.

Plant Physiol. 2014 Feb;164(2):548-54. doi: 10.1104/pp.113.228783. Epub 2013 Dec 5.


A quantitative telomeric chromatin isolation protocol identifies different telomeric states.

Grolimund L, Aeby E, Hamelin R, Armand F, Chiappe D, Moniatte M, Lingner J.

Nat Commun. 2013;4:2848. doi: 10.1038/ncomms3848.


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