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Items: 24

1.

Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking.

Singh N, Lapierre P, Quinlan TM, Halse TA, Wirth S, Dickinson MC, Lasek-Nesselquist E, Musser KA.

J Clin Microbiol. 2019 Jun 25;57(7). pii: e00307-19. doi: 10.1128/JCM.00307-19. Print 2019 Jul.

PMID:
31068414
2.

Neonatal Conjunctivitis Caused by Neisseria meningitidis US Urethritis Clade, New York, USA, August 2017.

Kretz CB, Bergeron G, Aldrich M, Bloch D, Del Rosso PE, Halse TA, Ostrowsky B, Liu Q, Gonzalez E, Omoregie E, Chicaiza L, Zayas G, Tha B, Liang A, Wang JC, Levi M, Hughes S, Musser KA, Weiss D, Rakeman JL.

Emerg Infect Dis. 2019 May;25(5):972-975. doi: 10.3201/eid2505.181631.

3.

Lymphogranuloma Venereum: An Increasingly Common Anorectal Infection Among Men Who Have Sex With Men Attending New York City Sexual Health Clinics.

Pathela P, Jamison K, Kornblum J, Quinlan T, Halse TA, Schillinger JA.

Sex Transm Dis. 2019 Feb;46(2):e14-e17. doi: 10.1097/OLQ.0000000000000921.

PMID:
30278027
4.

Sex Difference in Meningococcal Disease Mortality, New York City, 2008-2016.

Bloch D, Murray K, Peterson E, Ngai S, Rubinstein I, Halse TA, Ezeoke I, Miller L, Arakaki L, Ramautar A, Antwi M, Del Rosso P, Dorsinville M, Clark S, Halbrook M, Kennedy J, Braunstein S, Weiss D.

Clin Infect Dis. 2018 Aug 16;67(5):760-769. doi: 10.1093/cid/ciy183.

PMID:
29509877
5.

Mycobacterium orygis Lymphadenitis in New York, USA.

Marcos LA, Spitzer ED, Mahapatra R, Ma Y, Halse TA, Shea J, Isabelle M, Lapierre P, Escuyer VE.

Emerg Infect Dis. 2017 Oct;23(10):1749-1751. doi: 10.3201/eid2310.170490.

6.

Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.

Shea J, Halse TA, Lapierre P, Shudt M, Kohlerschmidt D, Van Roey P, Limberger R, Taylor J, Escuyer V, Musser KA.

J Clin Microbiol. 2017 Jun;55(6):1871-1882. doi: 10.1128/JCM.00298-17. Epub 2017 Apr 5.

7.

Detection of Borrelia miyamotoi and other tick-borne pathogens in human clinical specimens and Ixodes scapularis ticks in New York State, 2012-2015.

Wroblewski D, Gebhardt L, Prusinski MA, Meehan LJ, Halse TA, Musser KA.

Ticks Tick Borne Dis. 2017 Mar;8(3):407-411. doi: 10.1016/j.ttbdis.2017.01.004. Epub 2017 Jan 16.

PMID:
28131594
8.

Draft Genome Sequence of Branchiibius sp. NY16-3462-2, Isolated from a Mixed Clinical Sample.

Lapierre P, Halse TA, Shea J, Escuyer VE, Musser KA.

Genome Announc. 2016 May 12;4(3). pii: e00368-16. doi: 10.1128/genomeA.00368-16.

9.

Bordetella pertussis Strain Lacking Pertactin and Pertussis Toxin.

Williams MM, Sen K, Weigand MR, Skoff TH, Cunningham VA, Halse TA, Tondella ML; CDC Pertussis Working Group.

Emerg Infect Dis. 2016 Feb;22(2):319-322. doi: 10.3201/eid2202.151332.

10.

Comparative analytical evaluation of the respiratory TaqMan Array Card with real-time PCR and commercial multi-pathogen assays.

Harvey JJ, Chester S, Burke SA, Ansbro M, Aden T, Gose R, Sciulli R, Bai J, DesJardin L, Benfer JL, Hall J, Smole S, Doan K, Popowich MD, St George K, Quinlan T, Halse TA, Li Z, PĂ©rez-Osorio AC, Glover WA, Russell D, Reisdorf E, Whyte T Jr, Whitaker B, Hatcher C, Srinivasan V, Tatti K, Tondella ML, Wang X, Winchell JM, Mayer LW, Jernigan D, Mawle AC.

J Virol Methods. 2016 Feb;228:151-7. doi: 10.1016/j.jviromet.2015.11.020. Epub 2015 Nov 27.

PMID:
26640122
11.

Direct molecular testing to assess the incidence of meningococcal and other bacterial causes of meningitis among persons reported with unspecified bacterial meningitis.

Ramautar AE, Halse TA, Arakaki L, Antwi M, Del Rosso P, Dorsinville M, Nazarian E, Steiner-Sichel L, Lee L, Dickinson M, Wroblewski D, Dumas N, Musser K, Isaac B, Rakeman J, Weiss D.

Diagn Microbiol Infect Dis. 2015 Nov;83(3):305-11. doi: 10.1016/j.diagmicrobio.2015.06.005. Epub 2015 Jun 16.

PMID:
26341704
12.

Detection of Mycobacterium avium complex DNA directly in clinical respiratory specimens: opportunities for improved turn-around time and cost savings.

Tran AC, Halse TA, Escuyer VE, Musser KA.

Diagn Microbiol Infect Dis. 2014 May;79(1):43-8. doi: 10.1016/j.diagmicrobio.2014.01.019. Epub 2014 Jan 30.

PMID:
24612561
13.

Postmortem diagnosis of invasive meningococcal disease.

Ridpath AD, Halse TA, Musser KA, Wroblewski D, Paddock CD, Shieh WJ, Pasquale-Styles M, Scordi-Bello I, Del Rosso PE, Weiss D.

Emerg Infect Dis. 2014 Mar;20(3):453-5. doi: 10.3201/eid2003.131245.

14.

Pertactin-negative variants of Bordetella pertussis in New York State: a retrospective analysis, 2004-2013.

Quinlan T, Musser KA, Currenti SA, Zansky SM, Halse TA.

Mol Cell Probes. 2014 Aug;28(4):138-40. doi: 10.1016/j.mcp.2013.12.003. Epub 2013 Dec 21.

PMID:
24365130
15.

Utilization of a real-time PCR approach for Haemophilus influenzae serotype determination as an alternative to the slide agglutination test.

Wroblewski D, Halse TA, Hayes J, Kohlerschmidt D, Musser KA.

Mol Cell Probes. 2013 Apr;27(2):86-9. doi: 10.1016/j.mcp.2012.11.003. Epub 2012 Nov 26.

PMID:
23195602
16.

Enhanced identification and characterization of non-O157 Shiga toxin-producing Escherichia coli: a six-year study.

Mingle LA, Garcia DL, Root TP, Halse TA, Quinlan TM, Armstrong LR, Chiefari AK, Schoonmaker-Bopp DJ, Dumas NB, Limberger RJ, Musser KA.

Foodborne Pathog Dis. 2012 Nov;9(11):1028-36. doi: 10.1089/fpd.2012.1202. Epub 2012 Sep 25.

PMID:
23009170
17.

Evaluation of a single-tube multiplex real-time PCR for differentiation of members of the Mycobacterium tuberculosis complex in clinical specimens.

Halse TA, Escuyer VE, Musser KA.

J Clin Microbiol. 2011 Jul;49(7):2562-7. doi: 10.1128/JCM.00467-11. Epub 2011 May 18.

18.

Public health approach to detection of non-O157 Shiga toxin-producing Escherichia coli: summary of two outbreaks and laboratory procedures.

Schaffzin JK, Coronado F, Dumas NB, Root TP, Halse TA, Schoonmaker-Bopp DJ, Lurie MM, Nicholas D, Gerzonich B, Johnson GS, Wallace BJ, Musser KA.

Epidemiol Infect. 2012 Feb;140(2):283-9. doi: 10.1017/S0950268811000719. Epub 2011 May 5.

PMID:
21554779
19.

Combined real-time PCR and rpoB gene pyrosequencing for rapid identification of Mycobacterium tuberculosis and determination of rifampin resistance directly in clinical specimens.

Halse TA, Edwards J, Cunningham PL, Wolfgang WJ, Dumas NB, Escuyer VE, Musser KA.

J Clin Microbiol. 2010 Apr;48(4):1182-8. doi: 10.1128/JCM.02149-09. Epub 2010 Jan 27.

20.

Rapid molecular characterization of Clostridium difficile and assessment of populations of C. difficile in stool specimens.

Wroblewski D, Hannett GE, Bopp DJ, Dumyati GK, Halse TA, Dumas NB, Musser KA.

J Clin Microbiol. 2009 Jul;47(7):2142-8. doi: 10.1128/JCM.02498-08. Epub 2009 Apr 29.

21.

Epidemiologic investigation and targeted vaccination initiative in response to an outbreak of meningococcal disease among illicit drug users in Brooklyn, New York.

Weiss D, Stern EJ, Zimmerman C, Bregman B, Yeung A, Das D, Dentinger CM, Marx MA, Kornblum J, Lee L, Halse TA, Mayer LW, Hatcher CP, Theodore MJ, Schmink S, Harcourt BH, Zucker JR, Layton M, Clark TA; New York City Meningococcal Investigation Team.

Clin Infect Dis. 2009 Apr 1;48(7):894-901. doi: 10.1086/597257.

PMID:
19231975
22.
23.

In vitro activities of garenoxacin and levofloxacin against Chlamydia pneumoniae are not affected by presence of Mycoplasma DNA.

Smith RP, Baltch AL, Ritz WJ, Carpenter AN, Halse TA, Bopp LH.

Antimicrob Agents Chemother. 2004 Jun;48(6):2081-4.

24.

Development of a genomics-based PCR assay for detection of Mycoplasma pneumoniae in a large outbreak in New York State.

Waring AL, Halse TA, Csiza CK, Carlyn CJ, Arruda Musser K, Limberger RJ.

J Clin Microbiol. 2001 Apr;39(4):1385-90.

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