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Items: 1 to 50 of 51

1.

Efficient protein production by yeast requires global tuning of metabolism.

Huang M, Bao J, Hallström BM, Petranovic D, Nielsen J.

Nat Commun. 2017 Oct 25;8(1):1131. doi: 10.1038/s41467-017-00999-2.

2.

Improving the genotyping resolution of Cryptosporidium hominis subtype IbA10G2 using one step PCR-based amplicon sequencing.

Beser J, Hallström BM, Advani A, Andersson S, Östlund G, Winiecka-Krusnell J, Lebbad M, Alm E, Troell K, Arrighi RBG.

Infect Genet Evol. 2017 Nov;55:297-304. doi: 10.1016/j.meegid.2017.08.035. Epub 2017 Sep 23.

PMID:
28919550
3.

Inflammatory infiltrates in parathyroid tumors.

Haglund F, Hallström BM, Nilsson IL, Höög A, Juhlin CC, Larsson C.

Eur J Endocrinol. 2017 Dec;177(6):445-453. doi: 10.1530/EJE-17-0277. Epub 2017 Aug 30.

4.

AS3MT-mediated tolerance to arsenic evolved by multiple independent horizontal gene transfers from bacteria to eukaryotes.

Palmgren M, Engström K, Hallström BM, Wahlberg K, Søndergaard DA, Säll T, Vahter M, Broberg K.

PLoS One. 2017 Apr 20;12(4):e0175422. doi: 10.1371/journal.pone.0175422. eCollection 2017.

5.

Personal model-assisted identification of NAD+ and glutathione metabolism as intervention target in NAFLD.

Mardinoglu A, Bjornson E, Zhang C, Klevstig M, Söderlund S, Ståhlman M, Adiels M, Hakkarainen A, Lundbom N, Kilicarslan M, Hallström BM, Lundbom J, Vergès B, Barrett PH, Watts GF, Serlie MJ, Nielsen J, Uhlén M, Smith U, Marschall HU, Taskinen MR, Boren J.

Mol Syst Biol. 2017 Mar 2;13(3):916. doi: 10.15252/msb.20167422.

6.

Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion.

van Wijk XM, Döhrmann S, Hallström BM, Li S, Voldborg BG, Meng BX, McKee KK, van Kuppevelt TH, Yurchenco PD, Palsson BO, Lewis NE, Nizet V, Esko JD.

MBio. 2017 Jan 10;8(1). pii: e02128-16. doi: 10.1128/mBio.02128-16.

7.

Gene-specific correlation of RNA and protein levels in human cells and tissues.

Edfors F, Danielsson F, Hallström BM, Käll L, Lundberg E, Pontén F, Forsström B, Uhlén M.

Mol Syst Biol. 2016 Oct 20;12(10):883. doi: 10.15252/msb.20167144.

8.

The Human Adrenal Gland Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Bergman J, Botling J, Fagerberg L, Hallström BM, Djureinovic D, Uhlén M, Pontén F.

Endocrinology. 2017 Feb 1;158(2):239-251. doi: 10.1210/en.2016-1758.

PMID:
27901589
9.

Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments.

Fletcher E, Feizi A, Bisschops MMM, Hallström BM, Khoomrung S, Siewers V, Nielsen J.

Metab Eng. 2017 Jan;39:19-28. doi: 10.1016/j.ymben.2016.10.010. Epub 2016 Nov 2.

PMID:
27815194
10.

The terpene synthase gene family in Tripterygium wilfordii harbors a labdane-type diterpene synthase among the monoterpene synthase TPS-b subfamily.

Hansen NL, Heskes AM, Hamberger B, Olsen CE, Hallström BM, Andersen-Ranberg J, Hamberger B.

Plant J. 2017 Feb;89(3):429-441. doi: 10.1111/tpj.13410. Epub 2017 Feb 14.

11.

Profiling cancer testis antigens in non-small-cell lung cancer.

Djureinovic D, Hallström BM, Horie M, Mattsson JS, La Fleur L, Fagerberg L, Brunnström H, Lindskog C, Madjar K, Rahnenführer J, Ekman S, Ståhle E, Koyi H, Brandén E, Edlund K, Hengstler JG, Lambe M, Saito A, Botling J, Pontén F, Uhlén M, Micke P.

JCI Insight. 2016 Jul 7;1(10):e86837.

12.

Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.

Butler LM, Hallström BM, Fagerberg L, Pontén F, Uhlén M, Renné T, Odeberg J.

Cell Syst. 2016 Sep 28;3(3):287-301.e3. doi: 10.1016/j.cels.2016.08.001. Epub 2016 Sep 15.

13.

Oxidation and cyclization of casbene in the biosynthesis of Euphorbia factors from mature seeds of Euphorbia lathyris L.

Luo D, Callari R, Hamberger B, Wubshet SG, Nielsen MT, Andersen-Ranberg J, Hallström BM, Cozzi F, Heider H, Lindberg Møller B, Staerk D, Hamberger B.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):E5082-9. doi: 10.1073/pnas.1607504113. Epub 2016 Aug 9.

14.

Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance.

Lee S, Zhang C, Kilicarslan M, Piening BD, Bjornson E, Hallström BM, Groen AK, Ferrannini E, Laakso M, Snyder M, Blüher M, Uhlen M, Nielsen J, Smith U, Serlie MJ, Boren J, Mardinoglu A.

Cell Metab. 2016 Jul 12;24(1):172-84. doi: 10.1016/j.cmet.2016.05.026. Epub 2016 Jun 23.

15.

Adaptation to different types of stress converge on mitochondrial metabolism.

Lahtvee PJ, Kumar R, Hallström BM, Nielsen J.

Mol Biol Cell. 2016 Aug 1;27(15):2505-14. doi: 10.1091/mbc.E16-03-0187. Epub 2016 Jun 15.

16.

Transcriptomics resources of human tissues and organs.

Uhlén M, Hallström BM, Lindskog C, Mardinoglu A, Pontén F, Nielsen J.

Mol Syst Biol. 2016 Apr 4;12(4):862. doi: 10.15252/msb.20155865. Review.

17.

The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Habuka M, Fagerberg L, Hallström BM, Pontén F, Yamamoto T, Uhlen M.

PLoS One. 2015 Dec 22;10(12):e0145301. doi: 10.1371/journal.pone.0145301. eCollection 2015.

18.

The Human Endometrium-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Zieba A, Sjöstedt E, Olovsson M, Fagerberg L, Hallström BM, Oskarsson L, Edlund K, Tolf A, Uhlen M, Ponten F.

OMICS. 2015 Nov;19(11):659-68. doi: 10.1089/omi.2015.0115. Epub 2015 Oct 21.

PMID:
26488136
19.

Microfluidic screening and whole-genome sequencing identifies mutations associated with improved protein secretion by yeast.

Huang M, Bai Y, Sjostrom SL, Hallström BM, Liu Z, Petranovic D, Uhlén M, Joensson HN, Andersson-Svahn H, Nielsen J.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4689-96. doi: 10.1073/pnas.1506460112. Epub 2015 Aug 10.

20.

Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain.

Zhang Y, Liu G, Engqvist MK, Krivoruchko A, Hallström BM, Chen Y, Siewers V, Nielsen J.

Microb Cell Fact. 2015 Aug 8;14:116. doi: 10.1186/s12934-015-0305-6.

21.

Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer.

O'Hurley G, Busch C, Fagerberg L, Hallström BM, Stadler C, Tolf A, Lundberg E, Schwenk JM, Jirström K, Bjartell A, Gallagher WM, Uhlén M, Pontén F.

PLoS One. 2015 Aug 3;10(8):e0133449. doi: 10.1371/journal.pone.0133449. eCollection 2015.

22.

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Yu NY, Hallström BM, Fagerberg L, Ponten F, Kawaji H, Carninci P, Forrest AR; Fantom Consortium, Hayashizaki Y, Uhlén M, Daub CO.

Nucleic Acids Res. 2015 Aug 18;43(14):6787-98. doi: 10.1093/nar/gkv608. Epub 2015 Jun 27.

23.

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling.

Lindskog C, Linné J, Fagerberg L, Hallström BM, Sundberg CJ, Lindholm M, Huss M, Kampf C, Choi H, Liem DA, Ping P, Väremo L, Mardinoglu A, Nielsen J, Larsson E, Pontén F, Uhlén M.

BMC Genomics. 2015 Jun 25;16:475. doi: 10.1186/s12864-015-1686-y.

24.

Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex.

Sjöstedt E, Fagerberg L, Hallström BM, Häggmark A, Mitsios N, Nilsson P, Pontén F, Hökfelt T, Uhlén M, Mulder J.

PLoS One. 2015 Jun 15;10(6):e0130028. doi: 10.1371/journal.pone.0130028. eCollection 2015.

25.

Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil.

Gallus S, Hallström BM, Kumar V, Dodt WG, Janke A, Schumann GG, Nilsson MA.

Mol Biol Evol. 2015 May;32(5):1268-83. doi: 10.1093/molbev/msv017. Epub 2015 Jan 28.

26.

Solid-phase cloning for high-throughput assembly of single and multiple DNA parts.

Lundqvist M, Edfors F, Sivertsson Å, Hallström BM, Hudson EP, Tegel H, Holmberg A, Uhlén M, Rockberg J.

Nucleic Acids Res. 2015 Apr 20;43(7):e49. doi: 10.1093/nar/gkv036. Epub 2015 Jan 23.

27.

Proteomics. Tissue-based map of the human proteome.

Uhlén M, Fagerberg L, Hallström BM, Lindskog C, Oksvold P, Mardinoglu A, Sivertsson Å, Kampf C, Sjöstedt E, Asplund A, Olsson I, Edlund K, Lundberg E, Navani S, Szigyarto CA, Odeberg J, Djureinovic D, Takanen JO, Hober S, Alm T, Edqvist PH, Berling H, Tegel H, Mulder J, Rockberg J, Nilsson P, Schwenk JM, Hamsten M, von Feilitzen K, Forsberg M, Persson L, Johansson F, Zwahlen M, von Heijne G, Nielsen J, Pontén F.

Science. 2015 Jan 23;347(6220):1260419. doi: 10.1126/science.1260419.

28.

The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling.

Habuka M, Fagerberg L, Hallström BM, Kampf C, Edlund K, Sivertsson Å, Yamamoto T, Pontén F, Uhlén M, Odeberg J.

PLoS One. 2014 Dec 31;9(12):e116125. doi: 10.1371/journal.pone.0116125. eCollection 2014.

29.

The human pancreas proteome defined by transcriptomics and antibody-based profiling.

Danielsson A, Pontén F, Fagerberg L, Hallström BM, Schwenk JM, Uhlén M, Korsgren O, Lindskog C.

PLoS One. 2014 Dec 29;9(12):e115421. doi: 10.1371/journal.pone.0115421. eCollection 2014.

30.

The transcriptomic and proteomic landscapes of bone marrow and secondary lymphoid tissues.

Andersson S, Nilsson K, Fagerberg L, Hallström BM, Sundström C, Danielsson A, Edlund K, Uhlen M, Asplund A.

PLoS One. 2014 Dec 26;9(12):e115911. doi: 10.1371/journal.pone.0115911. eCollection 2014.

31.

Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling.

Edqvist PH, Fagerberg L, Hallström BM, Danielsson A, Edlund K, Uhlén M, Pontén F.

J Histochem Cytochem. 2015 Feb;63(2):129-41. doi: 10.1369/0022155414562646. Epub 2014 Nov 19.

32.

Biofuels. Altered sterol composition renders yeast thermotolerant.

Caspeta L, Chen Y, Ghiaci P, Feizi A, Buskov S, Hallström BM, Petranovic D, Nielsen J.

Science. 2014 Oct 3;346(6205):75-8. doi: 10.1126/science.1258137. Epub 2014 Oct 2.

33.

Evolution reveals a glutathione-dependent mechanism of 3-hydroxypropionic acid tolerance.

Kildegaard KR, Hallström BM, Blicher TH, Sonnenschein N, Jensen NB, Sherstyk S, Harrison SJ, Maury J, Herrgård MJ, Juncker AS, Forster J, Nielsen J, Borodina I.

Metab Eng. 2014 Nov;26:57-66. doi: 10.1016/j.ymben.2014.09.004. Epub 2014 Sep 28.

34.

Defining the human adipose tissue proteome to reveal metabolic alterations in obesity.

Mardinoglu A, Kampf C, Asplund A, Fagerberg L, Hallström BM, Edlund K, Blüher M, Pontén F, Uhlen M, Nielsen J.

J Proteome Res. 2014 Nov 7;13(11):5106-19. doi: 10.1021/pr500586e. Epub 2014 Sep 25.

PMID:
25219818
35.

Defining the human gallbladder proteome by transcriptomics and affinity proteomics.

Kampf C, Mardinoglu A, Fagerberg L, Hallström BM, Danielsson A, Nielsen J, Pontén F, Uhlen M.

Proteomics. 2014 Nov;14(21-22):2498-507. doi: 10.1002/pmic.201400201. Epub 2014 Oct 9.

PMID:
25175928
36.

Brown and polar bear Y chromosomes reveal extensive male-biased gene flow within brother lineages.

Bidon T, Janke A, Fain SR, Eiken HG, Hagen SB, Saarma U, Hallström BM, Lecomte N, Hailer F.

Mol Biol Evol. 2014 Jun;31(6):1353-63. doi: 10.1093/molbev/msu109. Epub 2014 Mar 25.

PMID:
24667925
37.

The human liver-specific proteome defined by transcriptomics and antibody-based profiling.

Kampf C, Mardinoglu A, Fagerberg L, Hallström BM, Edlund K, Lundberg E, Pontén F, Nielsen J, Uhlen M.

FASEB J. 2014 Jul;28(7):2901-14. doi: 10.1096/fj.14-250555. Epub 2014 Mar 19.

PMID:
24648543
38.

RNA- and antibody-based profiling of the human proteome with focus on chromosome 19.

Stadler C, Fagerberg L, Sivertsson Å, Oksvold P, Zwahlen M, Hallström BM, Lundberg E, Uhlén M.

J Proteome Res. 2014 Apr 4;13(4):2019-27. doi: 10.1021/pr401156g. Epub 2014 Mar 12.

PMID:
24579871
39.

Simultaneous uptake of lignocellulose-based monosaccharides by Escherichia coli.

Jarmander J, Hallström BM, Larsson G.

Biotechnol Bioeng. 2014 Jun;111(6):1108-15. doi: 10.1002/bit.25182. Epub 2014 Jan 23.

PMID:
24382675
40.

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.

Fagerberg L, Hallström BM, Oksvold P, Kampf C, Djureinovic D, Odeberg J, Habuka M, Tahmasebpoor S, Danielsson A, Edlund K, Asplund A, Sjöstedt E, Lundberg E, Szigyarto CA, Skogs M, Takanen JO, Berling H, Tegel H, Mulder J, Nilsson P, Schwenk JM, Lindskog C, Danielsson F, Mardinoglu A, Sivertsson A, von Feilitzen K, Forsberg M, Zwahlen M, Olsson I, Navani S, Huss M, Nielsen J, Ponten F, Uhlén M.

Mol Cell Proteomics. 2014 Feb;13(2):397-406. doi: 10.1074/mcp.M113.035600. Epub 2013 Dec 5.

41.

Response to comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage".

Hailer F, Kutschera VE, Hallström BM, Fain SR, Leonard JA, Arnason U, Janke A.

Science. 2013 Mar 29;339(6127):1522. doi: 10.1126/science.1228066.

PMID:
23539581
42.

Coalescent-based genome analyses resolve the early branches of the euarchontoglires.

Kumar V, Hallström BM, Janke A.

PLoS One. 2013;8(4):e60019. doi: 10.1371/journal.pone.0060019. Epub 2013 Apr 1.

43.

Impact of sequence diversity in the Moraxella catarrhalis UspA2/UspA2H head domain on vitronectin binding and antigenic variation.

Su YC, Hallström BM, Bernhard S, Singh B, Riesbeck K.

Microbes Infect. 2013 May;15(5):375-87. doi: 10.1016/j.micinf.2013.02.004. Epub 2013 Mar 6.

PMID:
23474333
44.

Activity of ancient RTE retroposons during the evolution of cows, spiral-horned antelopes, and Nilgais (Bovinae).

Nilsson MA, Klassert D, Bertelsen MF, Hallström BM, Janke A.

Mol Biol Evol. 2012 Oct;29(10):2885-8. Epub 2012 Jun 11.

PMID:
22688946
45.

Expansion of CORE-SINEs in the genome of the Tasmanian devil.

Nilsson MA, Janke A, Murchison EP, Ning Z, Hallström BM.

BMC Genomics. 2012 May 6;13:172. doi: 10.1186/1471-2164-13-172.

46.

Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage.

Hailer F, Kutschera VE, Hallström BM, Klassert D, Fain SR, Leonard JA, Arnason U, Janke A.

Science. 2012 Apr 20;336(6079):344-7. doi: 10.1126/science.1216424.

47.

A genomic approach to examine the complex evolution of laurasiatherian mammals.

Hallström BM, Schneider A, Zoller S, Janke A.

PLoS One. 2011;6(12):e28199. doi: 10.1371/journal.pone.0028199. Epub 2011 Dec 2.

48.

Mammalian evolution may not be strictly bifurcating.

Hallström BM, Janke A.

Mol Biol Evol. 2010 Dec;27(12):2804-16. doi: 10.1093/molbev/msq166. Epub 2010 Jun 29.

49.

Gnathostome phylogenomics utilizing lungfish EST sequences.

Hallström BM, Janke A.

Mol Biol Evol. 2009 Feb;26(2):463-71. doi: 10.1093/molbev/msn271. Epub 2008 Nov 24.

PMID:
19029191
50.

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