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Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia.

Black A, Moncla LH, Laiton-Donato K, Potter B, Pardo L, Rico A, Tovar C, Rojas DP, Longini IM, Halloran ME, Peláez-Carvajal D, Ramírez JD, Mercado-Reyes M, Bedford T.

BMC Infect Dis. 2019 Nov 12;19(1):963. doi: 10.1186/s12879-019-4566-2.


Reply to Lindsey, Höschler and de Silva.

Matrajt L, Halloran ME, Antia R.

Clin Infect Dis. 2019 Aug 14. pii: ciz774. doi: 10.1093/cid/ciz774. [Epub ahead of print] No abstract available.


Networks of face-to-face social contacts in Niakhar, Senegal.

Potter GE, Wong J, Sugimoto J, Diallo A, Victor JC, Neuzil K, Halloran ME.

PLoS One. 2019 Aug 6;14(8):e0220443. doi: 10.1371/journal.pone.0220443. eCollection 2019.


Estimating the cost of illness and burden of disease associated with the 2014-2015 chikungunya outbreak in the U.S. Virgin Islands.

Feldstein LR, Ellis EM, Rowhani-Rahbar A, Hennessey MJ, Staples JE, Halloran ME, Weaver MR.

PLoS Negl Trop Dis. 2019 Jul 19;13(7):e0007563. doi: 10.1371/journal.pntd.0007563. eCollection 2019 Jul.


mTOR Signaling Upregulates CDC6 via Suppressing miR-3178 and Promotes the Loading of DNA Replication Helicase.

Wu X, Li S, Hu X, Xiang X, Halloran M, Yang L, Williams TM, Houghton PJ, Shen C, He Z.

Sci Rep. 2019 Jul 8;9(1):9805. doi: 10.1038/s41598-019-46052-8.


Design of vaccine efficacy trials during public health emergencies.

Dean NE, Gsell PS, Brookmeyer R, De Gruttola V, Donnelly CA, Halloran ME, Jasseh M, Nason M, Riveros X, Watson CH, Henao-Restrepo AM, Longini IM.

Sci Transl Med. 2019 Jul 3;11(499). pii: eaat0360. doi: 10.1126/scitranslmed.aat0360. Review.


Aspirin for primary prevention of stroke in individuals without cardiovascular disease-A meta-analysis.

Judge C, Ruttledge S, Murphy R, Loughlin E, Gorey S, Costello M, Nolan A, Ferguson J, Halloran MO, O'Canavan M, O'Donnell MJ.

Int J Stroke. 2019 Jun 25:1747493019858780. doi: 10.1177/1747493019858780. [Epub ahead of print]


Comment on Laber et al.

Halloran ME, Hudgens MG.

J R Stat Soc Ser C Appl Stat. 2018 Aug;67(4):776. Epub 2018 Jul 18. No abstract available.


Spindle-F-actin interactions in mitotic spindles in an intact vertebrate epithelium.

Kita AM, Swider ZT, Erofeev I, Halloran MC, Goryachev AB, Bement WM.

Mol Biol Cell. 2019 Jul 1;30(14):1645-1654. doi: 10.1091/mbc.E19-02-0126. Epub 2019 May 15.


Reply to Skowronski and De Serres.

Ortiz JR, Sugimoto JD, Neuzil KM, Halloran ME, Victor JC.

Clin Infect Dis. 2019 May 6. pii: ciz352. doi: 10.1093/cid/ciz352. [Epub ahead of print] No abstract available.


Successes and failures of the live-attenuated influenza vaccine: can we do better?

Matrajt L, Halloran ME, Antia R.

Clin Infect Dis. 2019 May 6. pii: ciz358. doi: 10.1093/cid/ciz358. [Epub ahead of print]


Evaluating the Effectiveness of Vaccines Using a Regression Discontinuity Design.

Basta NE, Halloran ME.

Am J Epidemiol. 2019 Jun 1;188(6):987-990. doi: 10.1093/aje/kwz043.


Effects of infection history on dengue virus infection and pathogenicity.

Tsang TK, Ghebremariam SL, Gresh L, Gordon A, Halloran ME, Katzelnick LC, Rojas DP, Kuan G, Balmaseda A, Sugimoto J, Harris E, Longini IM Jr, Yang Y.

Nat Commun. 2019 Mar 18;10(1):1246. doi: 10.1038/s41467-019-09193-y.


Modulating CRISPR gene drive activity through nucleocytoplasmic localization of Cas9 in S. cerevisiae.

Goeckel ME, Basgall EM, Lewis IC, Goetting SC, Yan Y, Halloran M, Finnigan GC.

Fungal Biol Biotechnol. 2019 Feb 4;6:2. doi: 10.1186/s40694-019-0065-x. eCollection 2019.


Impact of rotavirus vaccine introduction in children less than 2 years of age presenting for medical care with diarrhea in rural Matlab, Bangladesh.

Schwartz LM, Zaman K, Yunus M, Basunia AH, Faruque ASG, Ahmed T, Rahman M, Sugimoto JD, Halloran ME, Rowhani-Rahbar A, Neuzil KM, Victor JC.

Clin Infect Dis. 2019 Feb 12. doi: 10.1093/cid/ciz133. [Epub ahead of print]


Polypharmacy and drug-drug interactions in older and younger people living with HIV: the POPPY study.

Halloran MO, Boyle C, Kehoe B, Bagkeris E, Mallon P, Post FA, Vera J, Williams I, Anderson J, Winston A, Sachikonye M, Sabin C, Boffito M.

Antivir Ther. 2019;24(3):193-201. doi: 10.3851/IMP3293.


Effectiveness of Seasonal Influenza Vaccination in Children in Senegal During a Year of Vaccine Mismatch: A Cluster-randomized Trial.

Diallo A, Diop OM, Diop D, Niang MN, Sugimoto JD, Ortiz JR, Faye EHA, Diarra B, Goudiaby D, Lewis KDC, Emery SL, Zangeneh SZ, Lafond KE, Sokhna C, Halloran ME, Widdowson MA, Neuzil KM, Victor JC.

Clin Infect Dis. 2019 Oct 30;69(10):1780-1788. doi: 10.1093/cid/ciz066.


Periods of high dengue transmission defined by rainfall do not impact efficacy of dengue vaccine in regions of endemic disease.

Pasin C, Halloran ME, Gilbert PB, Langevin E, Ochiai RL, Pitisuttithum P, Capeding MR, Carrasquilla G, Frago C, Cortés M, Chambonneau L, Moodie Z.

PLoS One. 2018 Dec 13;13(12):e0207878. doi: 10.1371/journal.pone.0207878. eCollection 2018.


Dengue seroprevalence in a cohort of schoolchildren and their siblings in Yucatan, Mexico (2015-2016).

Pavía-Ruz N, Barrera-Fuentes GA, Villanueva-Jorge S, Che-Mendoza A, Campuzano-Rincón JC, Manrique-Saide P, Rojas DP, Vazquez-Prokopec GM, Halloran ME, Longini IM, Gómez-Dantés H.

PLoS Negl Trop Dis. 2018 Nov 21;12(11):e0006748. doi: 10.1371/journal.pntd.0006748. eCollection 2018 Nov.


Epidemiology of dengue and other arboviruses in a cohort of school children and their families in Yucatan, Mexico: Baseline and first year follow-up.

Rojas DP, Barrera-Fuentes GA, Pavia-Ruz N, Salgado-Rodriguez M, Che-Mendoza A, Manrique-Saide P, Vazquez-Prokopec GM, Halloran ME, Longini IM, Gomez-Dantes H.

PLoS Negl Trop Dis. 2018 Nov 21;12(11):e0006847. doi: 10.1371/journal.pntd.0006847. eCollection 2018 Nov.


Recent Applications of Diazirines in Chemical Proteomics.

Halloran MW, Lumb JP.

Chemistry. 2019 Apr 1;25(19):4885-4898. doi: 10.1002/chem.201805004. Epub 2019 Jan 23. Review.


Quantifying the risk of local Zika virus transmission in the contiguous US during the 2015-2016 ZIKV epidemic.

Sun K, Zhang Q, Pastore-Piontti A, Chinazzi M, Mistry D, Dean NE, Rojas DP, Merler S, Poletti P, Rossi L, Halloran ME, Longini IM Jr, Vespignani A.

BMC Med. 2018 Oct 18;16(1):195. doi: 10.1186/s12916-018-1185-5.


Optimizing and evaluating biomarker combinations as trial-level general surrogates.

Gabriel EE, Sachs MC, Daniels MJ, Halloran ME.

Stat Med. 2019 Mar 30;38(7):1135-1146. doi: 10.1002/sim.7996. Epub 2018 Oct 10.


Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks.

Zarnitsyna VI, Bulusheva I, Handel A, Longini IM, Halloran ME, Antia R.

PLoS One. 2018 Jun 26;13(6):e0199674. doi: 10.1371/journal.pone.0199674. eCollection 2018.


Forecasting the effectiveness of indoor residual spraying for reducing dengue burden.

Hladish TJ, Pearson CAB, Patricia Rojas D, Gomez-Dantes H, Halloran ME, Vazquez-Prokopec GM, Longini IM.

PLoS Negl Trop Dis. 2018 Jun 25;12(6):e0006570. doi: 10.1371/journal.pntd.0006570. eCollection 2018 Jun.


Transmissibility of Norovirus in Urban Versus Rural Households in a Large Community Outbreak in China.

Tsang TK, Chen TM, Longini IM Jr, Halloran ME, Wu Y, Yang Y.

Epidemiology. 2018 Sep;29(5):675-683. doi: 10.1097/EDE.0000000000000855.


Corrigendum: Gene drive inhibition by the anti-CRISPR proteins AcrIIA2 and AcrIIA4 in Saccharomyces cerevisiae.

Basgall EM, Goetting SC, Goeckel ME, Giersch RM, Roggenkamp E, Schrock MN, Halloran M, Finnigan GC.

Microbiology. 2018 Jul;164(7):1004. doi: 10.1099/mic.0.000678. Epub 2018 May 29. No abstract available.


Distinct roles for the cell adhesion molecule Contactin2 in the development and function of neural circuits in zebrafish.

Gurung S, Asante E, Hummel D, Williams A, Feldman-Schultz O, Halloran MC, Sittaramane V, Chandrasekhar A.

Mech Dev. 2018 Aug;152:1-12. doi: 10.1016/j.mod.2018.05.005. Epub 2018 May 17.



Dean NE, Halloran ME, Longini IM.

Ann Appl Stat. 2018 Mar;12(1):330-347. doi: 10.1214/17-AOAS1095. Epub 2018 Mar 9.


Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks in Merida, Mexico.

Bisanzio D, Dzul-Manzanilla F, Gomez-Dantés H, Pavia-Ruz N, Hladish TJ, Lenhart A, Palacio-Vargas J, González Roldan JF, Correa-Morales F, Sánchez-Tejeda G, Kuri Morales P, Manrique-Saide P, Longini IM, Halloran ME, Vazquez-Prokopec GM.

PLoS Negl Trop Dis. 2018 Mar 15;12(3):e0006298. doi: 10.1371/journal.pntd.0006298. eCollection 2018 Mar.


Gene drive inhibition by the anti-CRISPR proteins AcrIIA2 and AcrIIA4 in Saccharomyces cerevisiae.

Basgall EM, Goetting SC, Goeckel ME, Giersch RM, Roggenkamp E, Schrock MN, Halloran M, Finnigan GC.

Microbiology. 2018 Apr;164(4):464-474. doi: 10.1099/mic.0.000635. Epub 2018 Feb 28. Erratum in: Microbiology. 2018 Jul;164(7):1004.


Efficacy of a bivalent killed whole-cell cholera vaccine over five years: a re-analysis of a cluster-randomized trial.

Fong Y, Halloran ME, Park JK, Marks F, Clemens JD, Chao DL.

BMC Infect Dis. 2018 Feb 20;18(1):84. doi: 10.1186/s12879-018-2981-4.


Seroprevalence of Dengue Antibodies in Three Urban Settings in Yucatan, Mexico.

Pavía-Ruz N, Diana Patricia Rojas, Salha Villanueva, Granja P, Balam-May A, Longini IM, Halloran ME, Manrique-Saide P, Gómez-Dantés H.

Am J Trop Med Hyg. 2018 Apr;98(4):1202-1208. doi: 10.4269/ajtmh.17-0382. Epub 2018 Feb 15.


An Assessment of Household and Individual-Level Mosquito Prevention Methods during the Chikungunya Virus Outbreak in the United States Virgin Islands, 2014-2015.

Feldstein LR, Rowhani-Rahbar A, Staples JE, Halloran ME, Ellis EM.

Am J Trop Med Hyg. 2018 Mar;98(3):845-848. doi: 10.4269/ajtmh.17-0799. Epub 2018 Feb 1.


Tuning CRISPR-Cas9 Gene Drives in Saccharomyces cerevisiae.

Roggenkamp E, Giersch RM, Schrock MN, Turnquist E, Halloran M, Finnigan GC.

G3 (Bethesda). 2018 Mar 2;8(3):999-1018. doi: 10.1534/g3.117.300557. Erratum in: G3 (Bethesda). 2018 Oct 3;8(10):3383.


Simulations for designing and interpreting intervention trials in infectious diseases.

Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M.

BMC Med. 2017 Dec 29;15(1):223. doi: 10.1186/s12916-017-0985-3.


Meningococcal carriage within households in the African meningitis belt: A longitudinal pilot study.

Basta NE, Berthe A, Keita M, Onwuchekwa U, Tamboura B, Traore A, Hassan-King M, Manigart O, Nascimento M, Stuart JM, Trotter C, Blake J, Carr AD, Gray SJ, Newbold LS, Deng Y, Wolfson J, Halloran ME, Greenwood B, Borrow R, Sow SO.

J Infect. 2018 Feb;76(2):140-148. doi: 10.1016/j.jinf.2017.11.006. Epub 2017 Nov 29.


Antibody-dependent enhancement of severe dengue disease in humans.

Katzelnick LC, Gresh L, Halloran ME, Mercado JC, Kuan G, Gordon A, Balmaseda A, Harris E.

Science. 2017 Nov 17;358(6365):929-932. doi: 10.1126/science.aan6836. Epub 2017 Nov 2.


Reply to Aguiar and Stollenwerk.

Yang Y, Meng Y, Halloran ME, Longini IM Jr.

Clin Infect Dis. 2018 Feb 1;66(4):642. doi: 10.1093/cid/cix883. No abstract available.


Dependency of Vaccine Efficacy on Preexposure and Age: A Closer Look at a Tetravalent Dengue Vaccine.

Yang Y, Meng Y, Halloran ME, Longini IM Jr.

Clin Infect Dis. 2018 Jan 6;66(2):178-184. doi: 10.1093/cid/cix766.


CRISPR-UnLOCK: Multipurpose Cas9-Based Strategies for Conversion of Yeast Libraries and Strains.

Roggenkamp E, Giersch RM, Wedeman E, Eaton M, Turnquist E, Schrock MN, Alkotami L, Jirakittisonthon T, Schluter-Pascua SE, Bayne GH, Wasko C, Halloran M, Finnigan GC.

Front Microbiol. 2017 Sep 20;8:1773. doi: 10.3389/fmicb.2017.01773. eCollection 2017.


C9ORF72, implicated in amytrophic lateral sclerosis and frontotemporal dementia, regulates endosomal trafficking.

Farg MA, Sundaramoorthy V, Sultana JM, Yang S, Atkinson RAK, Levina V, Halloran MA, Gleeson PA, Blair IP, Soo KY, King AE, Atkin JD.

Hum Mol Genet. 2017 Oct 15;26(20):4093-4094. doi: 10.1093/hmg/ddx309. No abstract available.


Evaluation and comparison of predictive individual-level general surrogates.

Gabriel EE, Sachs MC, Halloran ME.

Biostatistics. 2018 Jul 1;19(3):307-324. doi: 10.1093/biostatistics/kxx037.


Estimating population effects of vaccination using large, routinely collected data.

Halloran ME, Hudgens MG.

Stat Med. 2018 Jan 30;37(2):294-301. doi: 10.1002/sim.7392. Epub 2017 Jul 19.


Zika virus evolution and spread in the Americas.

Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes KG, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC.

Nature. 2017 Jun 15;546(7658):411-415. doi: 10.1038/nature22402. Epub 2017 May 24.


The Kinesin Adaptor Calsyntenin-1 Organizes Microtubule Polarity and Regulates Dynamics during Sensory Axon Arbor Development.

Lee TJ, Lee JW, Haynes EM, Eliceiri KW, Halloran MC.

Front Cell Neurosci. 2017 Apr 20;11:107. doi: 10.3389/fncel.2017.00107. eCollection 2017.


Spread of Zika virus in the Americas.

Zhang Q, Sun K, Chinazzi M, Pastore Y Piontti A, Dean NE, Rojas DP, Merler S, Mistry D, Poletti P, Rossi L, Bray M, Halloran ME, Longini IM Jr, Vespignani A.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):E4334-E4343. doi: 10.1073/pnas.1620161114. Epub 2017 Apr 25.


Effectiveness of a live oral human rotavirus vaccine after programmatic introduction in Bangladesh: A cluster-randomized trial.

Zaman K, Sack DA, Neuzil KM, Yunus M, Moulton LH, Sugimoto JD, Fleming JA, Hossain I, Arifeen SE, Azim T, Rahman M, Lewis KDC, Feller AJ, Qadri F, Halloran ME, Cravioto A, Victor JC.

PLoS Med. 2017 Apr 18;14(4):e1002282. doi: 10.1371/journal.pmed.1002282. eCollection 2017 Apr.


Persistent Arthralgia Associated with Chikungunya Virus Outbreak, US Virgin Islands, December 2014-February 2016.

Feldstein LR, Rowhani-Rahbar A, Staples JE, Weaver MR, Halloran ME, Ellis EM.

Emerg Infect Dis. 2017 Apr;23(4):673-676. doi: 10.3201/eid2304.161562.


Dependent Happenings: A Recent Methodological Review.

Halloran ME, Hudgens MG.

Curr Epidemiol Rep. 2016 Dec;3(4):297-305. doi: 10.1007/s40471-016-0086-4. Epub 2016 Jul 28.

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