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Items: 1 to 50 of 56

1.

The DNRA-Denitrification Dichotomy Differentiates Nitrogen Transformation Pathways in Mountain Lake Benthic Habitats.

Palacin-Lizarbe C, Camarero L, Hallin S, Jones CM, Cáliz J, Casamayor EO, Catalan J.

Front Microbiol. 2019 Jun 4;10:1229. doi: 10.3389/fmicb.2019.01229. eCollection 2019.

2.

External carbon addition for enhancing denitrification modifies bacterial community composition and affects CH4 and N2O production in sub-arctic mining pond sediments.

Hellman M, Bonilla-Rosso G, Widerlund A, Juhanson J, Hallin S.

Water Res. 2019 Jul 1;158:22-33. doi: 10.1016/j.watres.2019.04.007. Epub 2019 Apr 10.

PMID:
31009831
3.

Catch Crop Residues Stimulate N2O Emissions During Spring, Without Affecting the Genetic Potential for Nitrite and N2O Reduction.

Duan YF, Hallin S, Jones CM, Priemé A, Labouriau R, Petersen SO.

Front Microbiol. 2018 Nov 2;9:2629. doi: 10.3389/fmicb.2018.02629. eCollection 2018.

4.

Geospatial variation in co-occurrence networks of nitrifying microbial guilds.

Jones CM, Hallin S.

Mol Ecol. 2019 Jan;28(2):293-306. doi: 10.1111/mec.14893. Epub 2018 Nov 3.

PMID:
30307658
5.

Soil bacterial networks are less stable under drought than fungal networks.

de Vries FT, Griffiths RI, Bailey M, Craig H, Girlanda M, Gweon HS, Hallin S, Kaisermann A, Keith AM, Kretzschmar M, Lemanceau P, Lumini E, Mason KE, Oliver A, Ostle N, Prosser JI, Thion C, Thomson B, Bardgett RD.

Nat Commun. 2018 Aug 2;9(1):3033. doi: 10.1038/s41467-018-05516-7.

6.

Expression of nirK and nirS genes in two strains of Pseudomonas stutzeri harbouring both types of NO-forming nitrite reductases.

Wittorf L, Jones CM, Bonilla-Rosso G, Hallin S.

Res Microbiol. 2018 Jul - Aug;169(6):343-347. doi: 10.1016/j.resmic.2018.04.010. Epub 2018 May 9.

PMID:
29752987
7.

Mixtures of macrophyte growth forms promote nitrogen cycling in wetlands.

Choudhury MI, McKie BG, Hallin S, Ecke F.

Sci Total Environ. 2018 Sep 1;635:1436-1443. doi: 10.1016/j.scitotenv.2018.04.193. Epub 2018 Apr 25.

PMID:
29710596
8.

Growth yield and selection of nosZ clade II types in a continuous enrichment culture of N2 O respiring bacteria.

Conthe M, Wittorf L, Kuenen JG, Kleerebezem R, Hallin S, van Loosdrecht MCM.

Environ Microbiol Rep. 2018 Jun;10(3):239-244. doi: 10.1111/1758-2229.12630. Epub 2018 Apr 10.

PMID:
29457693
9.

Life on N2O: deciphering the ecophysiology of N2O respiring bacterial communities in a continuous culture.

Conthe M, Wittorf L, Kuenen JG, Kleerebezem R, van Loosdrecht MCM, Hallin S.

ISME J. 2018 Apr;12(4):1142-1153. doi: 10.1038/s41396-018-0063-7. Epub 2018 Feb 7.

10.

Genomics and Ecology of Novel N2O-Reducing Microorganisms.

Hallin S, Philippot L, Löffler FE, Sanford RA, Jones CM.

Trends Microbiol. 2018 Jan;26(1):43-55. doi: 10.1016/j.tim.2017.07.003. Epub 2017 Aug 10. Review.

PMID:
28803698
11.

Habitat diversity and ecosystem multifunctionality-The importance of direct and indirect effects.

Alsterberg C, Roger F, Sundbäck K, Juhanson J, Hulth S, Hallin S, Gamfeldt L.

Sci Adv. 2017 Feb 8;3(2):e1601475. doi: 10.1126/sciadv.1601475. eCollection 2017 Feb.

12.
13.

Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient.

Monard C, Gantner S, Bertilsson S, Hallin S, Stenlid J.

Sci Rep. 2016 Nov 25;6:37719. doi: 10.1038/srep37719.

14.

Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability.

Wittorf L, Bonilla-Rosso G, Jones CM, Bäckman O, Hulth S, Hallin S.

Environ Microbiol Rep. 2016 Oct;8(5):936. doi: 10.1111/1758-2229.12449. No abstract available.

PMID:
30240172
15.

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman JM, Abell G, Philippot L, Prosser J, Foulquier A, Yuste JC, Glanville HC, Jones DL, Angel R, Salminen J, Newton RJ, Bürgmann H, Ingram LJ, Hamer U, Siljanen HM, Peltoniemi K, Potthast K, Bañeras L, Hartmann M, Banerjee S, Yu RQ, Nogaro G, Richter A, Koranda M, Castle SC, Goberna M, Song B, Chatterjee A, Nunes OC, Lopes AR, Cao Y, Kaisermann A, Hallin S, Strickland MS, Garcia-Pausas J, Barba J, Kang H, Isobe K, Papaspyrou S, Pastorelli R, Lagomarsino A, Lindström ES, Basiliko N, Nemergut DR.

Front Microbiol. 2016 Feb 24;7:214. doi: 10.3389/fmicb.2016.00214. eCollection 2016.

16.

Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability.

Wittorf L, Bonilla-Rosso G, Jones CM, Bäckman O, Hulth S, Hallin S.

Environ Microbiol Rep. 2016 Aug;8(4):486-92. doi: 10.1111/1758-2229.12393. Epub 2016 Mar 21. Erratum in: Environ Microbiol Rep. 2016 Oct;8(5):936.

PMID:
26929183
17.

Control of Microthrix parvicella and sludge bulking by ozone in a full-scale WWTP.

Levén L, Wijnbladh E, Tuvesson M, Kragelund C, Hallin S.

Water Sci Technol. 2016;73(4):866-72. doi: 10.2166/wst.2015.560.

PMID:
26901730
18.

Archaeal Ammonia Oxidizers Dominate in Numbers, but Bacteria Drive Gross Nitrification in N-amended Grassland Soil.

Sterngren AE, Hallin S, Bengtson P.

Front Microbiol. 2015 Nov 30;6:1350. doi: 10.3389/fmicb.2015.01350. eCollection 2015.

19.
20.

Relative importance of plant uptake and plant associated denitrification for removal of nitrogen from mine drainage in sub-arctic wetlands.

Hallin S, Hellman M, Choudhury MI, Ecke F.

Water Res. 2015 Nov 15;85:377-83. doi: 10.1016/j.watres.2015.08.060. Epub 2015 Sep 3.

PMID:
26360231
21.

Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions.

Graf DR, Jones CM, Hallin S.

PLoS One. 2014 Dec 1;9(12):e114118. doi: 10.1371/journal.pone.0114118. eCollection 2014.

22.

Nitrogen removal and spatial distribution of denitrifier and anammox communities in a bioreactor for mine drainage treatment.

Herbert RB Jr, Winbjörk H, Hellman M, Hallin S.

Water Res. 2014 Dec 1;66:350-360. doi: 10.1016/j.watres.2014.08.038. Epub 2014 Sep 4.

PMID:
25233117
23.

Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild.

Hallin S, Welsh A, Stenström J, Hallet S, Enwall K, Bru D, Philippot L.

PLoS One. 2012;7(12):e51962. doi: 10.1371/journal.pone.0051962. Epub 2012 Dec 20.

24.

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink.

Jones CM, Graf DR, Bru D, Philippot L, Hallin S.

ISME J. 2013 Feb;7(2):417-26. doi: 10.1038/ismej.2012.125. Epub 2012 Nov 15.

25.

The role of plant type and salinity in the selection for the denitrifying community structure in the rhizosphere of wetland vegetation.

Bañeras L, Ruiz-Rueda O, López-Flores R, Quintana XD, Hallin S.

Int Microbiol. 2012 Jun;15(2):89-99.

26.

Standardisation of methods in soil microbiology: progress and challenges.

Philippot L, Ritz K, Pandard P, Hallin S, Martin-Laurent F.

FEMS Microbiol Ecol. 2012 Oct;82(1):1-10. doi: 10.1111/j.1574-6941.2012.01436.x. Epub 2012 Jul 13. Review.

27.

Emergent macrophytes act selectively on ammonia-oxidizing bacteria and archaea.

Trias R, Ruiz-Rueda O, García-Lledó A, Vilar-Sanz A, López-Flores R, Quintana XD, Hallin S, Bañeras L.

Appl Environ Microbiol. 2012 Sep;78(17):6352-6. doi: 10.1128/AEM.00919-12. Epub 2012 Jun 15.

28.

Ammonia oxidizing bacterial community composition and process performance in wastewater treatment plants under low temperature conditions.

Rodriguez-Caballero A, Hallin S, Påhlson C, Odlare M, Dahlquist E.

Water Sci Technol. 2012;65(2):197-204. doi: 10.2166/wst.2012.643.

PMID:
22233895
29.

Abundance and composition of epiphytic bacterial and archaeal ammonia oxidizers of marine red and brown macroalgae.

Trias R, García-Lledó A, Sánchez N, López-Jurado JL, Hallin S, Bañeras L.

Appl Environ Microbiol. 2012 Jan;78(2):318-25. doi: 10.1128/AEM.05904-11. Epub 2011 Nov 11.

30.

Response of induced perturbation on replicating β-proteobacterial ammonia-oxidizing populations in soil.

Nyberg KA, Enwall K, Schnürer A, Sundh I, Hallin S.

Microb Ecol. 2012 Apr;63(3):701-9. doi: 10.1007/s00248-011-9970-0. Epub 2011 Nov 4.

PMID:
22052370
31.

Genetic potential for N2O emissions from the sediment of a free water surface constructed wetland.

García-Lledó A, Vilar-Sanz A, Trias R, Hallin S, Bañeras L.

Water Res. 2011 Nov 1;45(17):5621-32. doi: 10.1016/j.watres.2011.08.025. Epub 2011 Aug 30.

PMID:
21920580
32.

Towards food, feed and energy crops mitigating climate change.

Philippot L, Hallin S.

Trends Plant Sci. 2011 Sep;16(9):476-80. doi: 10.1016/j.tplants.2011.05.007. Epub 2011 Jun 21.

PMID:
21700487
33.

Survey of bromodeoxyuridine uptake among environmental bacteria and variation in uptake rates in a taxonomically diverse set of bacterial isolates.

Hellman M, Berg J, Brandt KK, Hallin S.

J Microbiol Methods. 2011 Sep;86(3):376-8. doi: 10.1016/j.mimet.2011.05.020. Epub 2011 Jun 2.

PMID:
21663771
34.

Phenotypic and genotypic heterogeneity among closely related soil-borne N2 - and N2 O-producing Bacillus isolates harboring the nosZ gene.

Jones CM, Welsh A, Throbäck IN, Dörsch P, Bakken LR, Hallin S.

FEMS Microbiol Ecol. 2011 Jun;76(3):541-52. doi: 10.1111/j.1574-6941.2011.01071.x. Epub 2011 Mar 14.

35.

Inter-laboratory evaluation of the ISO standard 11063 "Soil quality - Method to directly extract DNA from soil samples".

Petric I, Philippot L, Abbate C, Bispo A, Chesnot T, Hallin S, Laval K, Lebeau T, Lemanceau P, Leyval C, Lindström K, Pandard P, Romero E, Sarr A, Schloter M, Simonet P, Smalla K, Wilke BM, Martin-Laurent F.

J Microbiol Methods. 2011 Mar;84(3):454-60. doi: 10.1016/j.mimet.2011.01.016. Epub 2011 Jan 21.

PMID:
21256879
36.

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning.

Wessén E, Söderström M, Stenberg M, Bru D, Hellman M, Welsh A, Thomsen F, Klemedtson L, Philippot L, Hallin S.

ISME J. 2011 Jul;5(7):1213-25. doi: 10.1038/ismej.2010.206. Epub 2011 Jan 13.

37.

Global phylogeography of chitinase genes in aquatic metagenomes.

Beier S, Jones CM, Mohit V, Hallin S, Bertilsson S.

Appl Environ Microbiol. 2011 Feb;77(3):1101-6. doi: 10.1128/AEM.01481-10. Epub 2010 Nov 29.

38.

Bacterial community diversity in paper mills processing recycled paper.

Granhall U, Welsh A, Throbäck IN, Hjort K, Hansson M, Hallin S.

J Ind Microbiol Biotechnol. 2010 Oct;37(10):1061-9. doi: 10.1007/s10295-010-0754-1. Epub 2010 Jun 11.

PMID:
20544256
39.

The ecological coherence of high bacterial taxonomic ranks.

Philippot L, Andersson SG, Battin TJ, Prosser JI, Schimel JP, Whitman WB, Hallin S.

Nat Rev Microbiol. 2010 Jul;8(7):523-9. doi: 10.1038/nrmicro2367. Review.

PMID:
20531276
40.

Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management.

Enwall K, Throbäck IN, Stenberg M, Söderström M, Hallin S.

Appl Environ Microbiol. 2010 Apr;76(7):2243-50. doi: 10.1128/AEM.02197-09. Epub 2010 Jan 29.

41.

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities.

Jones CM, Hallin S.

ISME J. 2010 May;4(5):633-41. doi: 10.1038/ismej.2009.152. Epub 2010 Jan 21.

PMID:
20090785
42.

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

Philippot L, Bru D, Saby NP, Cuhel J, Arrouays D, Simek M, Hallin S.

Environ Microbiol. 2009 Dec;11(12):3096-104. doi: 10.1111/j.1462-2920.2009.02014.x. Epub 2009 Jul 23.

PMID:
19638171
43.

Activity and composition of ammonia oxidizing bacterial communities and emission dynamics of NH3 and N2O in a compost reactor treating organic household waste.

Jarvis A, Sundberg C, Milenkovski S, Pell M, Smårs S, Lindgren PE, Hallin S.

J Appl Microbiol. 2009 May;106(5):1502-11. doi: 10.1111/j.1365-2672.2008.04111.x. Epub 2009 Feb 4.

44.

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment.

Hallin S, Jones CM, Schloter M, Philippot L.

ISME J. 2009 May;3(5):597-605. doi: 10.1038/ismej.2008.128. Epub 2009 Jan 15.

PMID:
19148144
45.

Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil.

Enwall K, Hallin S.

Lett Appl Microbiol. 2009 Jan;48(1):145-8. doi: 10.1111/j.1472-765X.2008.02498.x. Epub 2008 Dec 2.

46.

Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland.

Ruiz-Rueda O, Hallin S, Bañeras L.

FEMS Microbiol Ecol. 2009 Feb;67(2):308-19. doi: 10.1111/j.1574-6941.2008.00615.x. Epub 2008 Nov 18.

47.

Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

Jones CM, Stres B, Rosenquist M, Hallin S.

Mol Biol Evol. 2008 Sep;25(9):1955-66. doi: 10.1093/molbev/msn146. Epub 2008 Jul 8.

PMID:
18614527
48.

Spatial variations in denitrification activity in wetland sediments explained by hydrology and denitrifying community structure.

Kjellin J, Hallin S, Wörman A.

Water Res. 2007 Dec;41(20):4710-20. Epub 2007 Jun 27.

PMID:
17643466
49.

Silver (Ag+) reduces denitrification and induces enrichment of novel nirK genotypes in soil.

Throbäck IN, Johansson M, Rosenquist M, Pell M, Hansson M, Hallin S.

FEMS Microbiol Lett. 2007 May;270(2):189-94. Epub 2007 Jan 24.

50.

Metabolic profiles and genetic diversity of denitrifying communities in activated sludge after addition of methanol or ethanol.

Hallin S, Throbäck IN, Dicksved J, Pell M.

Appl Environ Microbiol. 2006 Aug;72(8):5445-52.

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