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Items: 1 to 50 of 52

1.

Body Composition and Genetic Lipodystrophy Risk Score Associate With Nonalcoholic Fatty Liver Disease and Liver Fibrosis.

Chen VL, Wright AP, Halligan B, Chen Y, Du X, Handelman SK, Long MT, Kiel DP, Speliotes EK.

Hepatol Commun. 2019 Jun 18;3(8):1073-1084. doi: 10.1002/hep4.1391. eCollection 2019 Aug.

2.

Insulin Resistance Exacerbates Genetic Predisposition to Nonalcoholic Fatty Liver Disease in Individuals Without Diabetes.

Barata L, Feitosa MF, Bielak LF, Halligan B, Baldridge AS, Guo X, Yerges-Armstrong LM, Smith AV, Yao J, Palmer ND, VanWagner LB, Carr JJ, Chen YI, Allison M, Budoff MJ, Handelman SK, Kardia SLR, Mosley TH Jr, Ryan K, Harris TB, Launer LJ, Gudnason V, Rotter JI, Fornage M, Rasmussen-Torvik LJ, Borecki IB, O'Connell JR, Peyser PA, Speliotes EK, Province MA.

Hepatol Commun. 2019 Apr 18;3(7):894-907. doi: 10.1002/hep4.1353. eCollection 2019 Jul.

3.

Insights from Genome-Wide Association Analyses of Nonalcoholic Fatty Liver Disease.

Kahali B, Halligan B, Speliotes EK.

Semin Liver Dis. 2015 Nov;35(4):375-91. doi: 10.1055/s-0035-1567870. Epub 2015 Dec 16. Review.

4.

Comprehensive characterization of glioblastoma tumor tissues for biomarker identification using mass spectrometry-based label-free quantitative proteomics.

Heroux MS, Chesnik MA, Halligan BD, Al-Gizawiy M, Connelly JM, Mueller WM, Rand SD, Cochran EJ, LaViolette PS, Malkin MG, Schmainda KM, Mirza SP.

Physiol Genomics. 2014 Jul 1;46(13):467-81. doi: 10.1152/physiolgenomics.00034.2014. Epub 2014 May 6.

5.

Partial molecular cloning of the JHK retrovirus using gammaretrovirus consensus PCR primers.

Halligan BD, Sun HY, Kushnaryov VM, Grossberg SE.

Future Virol. 2013 May;8(5):507-520.

6.

Human cytomegalovirus pUL29/28 and pUL38 repression of p53-regulated p21CIP1 and caspase 1 promoters during infection.

Savaryn JP, Reitsma JM, Bigley TM, Halligan BD, Qian Z, Yu D, Terhune SS.

J Virol. 2013 Mar;87(5):2463-74. doi: 10.1128/JVI.01926-12. Epub 2012 Dec 12.

7.

Mitochondrial proteomic analysis reveals deficiencies in oxygen utilization in medullary thick ascending limb of Henle in the Dahl salt-sensitive rat.

Zheleznova NN, Yang C, Ryan RP, Halligan BD, Liang M, Greene AS, Cowley AW Jr.

Physiol Genomics. 2012 Sep 1;44(17):829-42. doi: 10.1152/physiolgenomics.00060.2012. Epub 2012 Jul 17.

8.

Relative deficiency of acidic isoforms of osteopontin from stone former urine.

Kolbach AM, Afzal O, Halligan B, Sorokina E, Kleinman JG, Wesson JA.

Urol Res. 2012 Oct;40(5):447-54. doi: 10.1007/s00240-012-0459-1. Epub 2012 Feb 10.

9.

Sequential abundant ion fragmentation analysis (SAIFA): an alternative approach for phosphopeptide identification using an ion trap mass spectrometer.

Chesnik M, Halligan B, Olivier M, Mirza SP.

Anal Biochem. 2011 Nov 15;418(2):197-203. doi: 10.1016/j.ab.2011.07.026. Epub 2011 Jul 30.

10.

Visualize: a free and open source multifunction tool for proteomics data analysis.

Halligan BD, Greene AS.

Proteomics. 2011 Mar;11(6):1058-63. doi: 10.1002/pmic.201000556. Epub 2011 Feb 7.

11.

Antiviral inhibition targeting the HCMV kinase pUL97 requires pUL27-dependent degradation of Tip60 acetyltransferase and cell-cycle arrest.

Reitsma JM, Savaryn JP, Faust K, Sato H, Halligan BD, Terhune SS.

Cell Host Microbe. 2011 Feb 17;9(2):103-14. doi: 10.1016/j.chom.2011.01.006.

12.

Quantitative proteomic analysis of the chemolithoautotrophic bacterium Nitrosomonas europaea: comparison of growing- and energy-starved cells.

Pellitteri-Hahn MC, Halligan BD, Scalf M, Smith L, Hickey WJ.

J Proteomics. 2011 Apr 1;74(4):411-9. doi: 10.1016/j.jprot.2010.12.003. Epub 2010 Dec 21.

PMID:
21172464
13.

Time series proteome profiling.

Formolo CA, Mintz M, Takanohashi A, Brown KJ, Vanderver A, Halligan B, Hathout Y.

Methods Mol Biol. 2011;694:365-77. doi: 10.1007/978-1-60761-977-2_22.

14.

Candidate urinary biomarker discovery in ureteropelvic junction obstruction: a proteomic approach.

Mesrobian HG, Mitchell ME, See WA, Halligan BD, Carlson BE, Greene AS, Wakim BT.

J Urol. 2010 Aug;184(2):709-14. doi: 10.1016/j.juro.2010.03.061.

PMID:
20639044
15.

Quantitative analysis of SILAC data sets using spectral counting.

Parker SJ, Halligan BD, Greene AS.

Proteomics. 2010 Apr;10(7):1408-15. doi: 10.1002/pmic.200900684.

16.

The urine proteome for radiation biodosimetry: effect of total body vs. local kidney irradiation.

Sharma M, Halligan BD, Wakim BT, Savin VJ, Cohen EP, Moulder JE.

Health Phys. 2010 Feb;98(2):186-95. doi: 10.1097/HP.0b013e3181b17cbd.

17.

Identification of proteins interacting with GTP cyclohydrolase I.

Du J, Xu H, Wei N, Wakim B, Halligan B, Pritchard KA Jr, Shi Y.

Biochem Biophys Res Commun. 2009 Jul 24;385(2):143-7. doi: 10.1016/j.bbrc.2009.05.026. Epub 2009 May 12.

18.

Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms.

Halligan BD, Geiger JF, Vallejos AK, Greene AS, Twigger SN.

J Proteome Res. 2009 Jun;8(6):3148-53. doi: 10.1021/pr800970z.

19.

ProMoST: a tool for calculating the pI and molecular mass of phosphorylated and modified proteins on two-dimensional gels.

Halligan BD.

Methods Mol Biol. 2009;527:283-98, ix. doi: 10.1007/978-1-60327-834-8_21. Review.

20.

Protein composition of plasminogen activator inhibitor type 1-derived endothelial microparticles.

Sander TL, Ou JS, Densmore JC, Kaul S, Matus I, Twigger S, Halligan B, Greene AS, Pritchard KA Jr, Oldham KT.

Shock. 2008 Apr;29(4):504-11.

PMID:
18598005
21.

Comparative proteomic analysis of PAI-1 and TNF-alpha-derived endothelial microparticles.

Peterson DB, Sander T, Kaul S, Wakim BT, Halligan B, Twigger S, Pritchard KA Jr, Oldham KT, Ou JS.

Proteomics. 2008 Jun;8(12):2430-46. doi: 10.1002/pmic.200701029.

22.

The Urine Proteome as a Biomarker of Radiation Injury: Submitted to Proteomics- Clinical Applications Special Issue: "Renal and Urinary Proteomics (Thongboonkerd)"

Sharma M, Halligan BD, Wakim BT, Savin VJ, Cohen EP, Moulder JE.

Proteomics Clin Appl. 2008 Jun 18;2(7-8):1065-1086.

23.

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Genome Information Integration Project And H-Invitational 2, Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang Q, Go M, Minoshima S, Ohtsubo M, Hanada K, Tonellato P, Isogai T, Zhang J, Lenhard B, Kim S, Chen Z, Hinz U, Estreicher A, Nakai K, Makalowska I, Hide W, Tiffin N, Wilming L, Chakraborty R, Soares MB, Chiusano ML, Suzuki Y, Auffray C, Yamaguchi-Kabata Y, Itoh T, Hishiki T, Fukuchi S, Nishikawa K, Sugano S, Nomura N, Tateno Y, Imanishi T, Gojobori T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9. Epub 2007 Dec 18.

24.

Quantifying raft proteins in neonatal mouse brain by 'tube-gel' protein digestion label-free shotgun proteomics.

Yu H, Wakim B, Li M, Halligan B, Tint GS, Patel SB.

Proteome Sci. 2007 Sep 24;5:17. doi: 10.1186/1477-5956-5-17.

25.
26.

Improved method for the analysis of membrane proteins by mass spectrometry.

Mirza SP, Halligan BD, Greene AS, Olivier M.

Physiol Genomics. 2007 Jun 19;30(1):89-94. Epub 2007 Mar 6.

27.

Secreted proteome profiling in human RPE cell cultures derived from donors with age related macular degeneration and age matched healthy donors.

An E, Lu X, Flippin J, Devaney JM, Halligan B, Hoffman EP, Strunnikova N, Csaky K, Hathout Y.

J Proteome Res. 2006 Oct;5(10):2599-610. Erratum in: J Proteome Res. 2007 Apr;6(4):1615. Strunnikova, Nataly [added]; Hoffman, Eric [corrected to Hoffman, Eric P].

PMID:
17022631
28.

DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.

Halligan BD, Ruotti V, Twigger SN, Greene AS.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W376-81.

29.

Simultaneous quantification and identification using 18O labeling with an ion trap mass spectrometer and the analysis software application "ZoomQuant".

Hicks WA, Halligan BD, Slyper RY, Twigger SN, Greene AS, Olivier M.

J Am Soc Mass Spectrom. 2005 Jun;16(6):916-25. Epub 2005 Apr 15.

30.

ZoomQuant: an application for the quantitation of stable isotope labeled peptides.

Halligan BD, Slyper RY, Twigger SN, Hicks W, Olivier M, Greene AS.

J Am Soc Mass Spectrom. 2005 Mar;16(3):302-6. Epub 2005 Jan 13.

31.

Peptide identification using peptide amino acid attribute vectors.

Halligan BD, Dratz EA, Feng X, Twigger SN, Tonellato PJ, Greene AS.

J Proteome Res. 2004 Jul-Aug;3(4):813-20.

PMID:
15359736
32.

ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels.

Halligan BD, Ruotti V, Jin W, Laffoon S, Twigger SN, Dratz EA.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W638-44.

33.

Variations in site and levels of expression of chondrocyte nucleotide pyrophosphohydrolase with aging.

Masuda I, Iyama KI, Halligan BD, Barbieri JT, Haas AL, McCarty DJ, Ryan LM.

J Bone Miner Res. 2001 May;16(5):868-75.

34.

Identification and analysis of a third mouse Polycomb gene, MPc3.

Hemenway CS, Halligan BW, Gould GC, Levy LS.

Gene. 2000 Jan 25;242(1-2):31-40.

PMID:
10721694
35.

V(D)J recombinational signal sequence DNA binding activities expressed by fetal bovine thymus.

Zhu L, Halligan BD.

Vet Immunol Immunopathol. 1999 Nov 30;71(3-4):277-89.

PMID:
10587307
36.

Characterization of a 3'-5' exonuclease associated with VDJP.

Zhu L, Halligan BD.

Biochem Biophys Res Commun. 1999 Jun 7;259(2):262-70.

PMID:
10362497
37.

A method to generate full-length cDNA molecules from yeast two-hybrid clones and RACE products.

Hemenway CS, Halligan BW, Gould GC.

Anal Biochem. 1999 Mar 1;268(1):161-2. No abstract available.

PMID:
10036178
38.

The Bmi-1 oncoprotein interacts with dinG and MPh2: the role of RING finger domains.

Hemenway CS, Halligan BW, Levy LS.

Oncogene. 1998 May 14;16(19):2541-7.

39.

Molecular cloning and expression of a porcine chondrocyte nucleotide pyrophosphohydrolase.

Masuda I, Halligan BD, Barbieri JT, Haas AL, Ryan LM, McCarty DJ.

Gene. 1997 Sep 15;197(1-2):277-87.

PMID:
9332376
40.

Site directed DNA joining.

Guilliams TG, Teng M, Halligan BD.

Biochimie. 1997;79(1):13-22.

PMID:
9195041
41.

Cloning of the murine cDNA encoding VDJP, a protein homologous to the large subunit of replication factor C and bacterial DNA ligases.

Halligan BD, Teng M, Guilliams TG, Nauert JB, Halligan NL.

Gene. 1995 Aug 19;161(2):217-22.

PMID:
7665082
42.

Distance and end configuration effects on VDJP-mediated DNA joining.

Guilliams TG, Teng M, Halligan BD.

Biochem Biophys Res Commun. 1994 Jul 29;202(2):1134-41.

PMID:
8048927
43.

A new protein motif found in DNA joining and DNA binding proteins.

Halligan BD.

Nucleic Acids Res. 1993 Nov 25;21(23):5520-1. No abstract available.

44.

Nonamer binding protein induces a bend in the immunoglobulin gene recombinational signal sequence.

Andrews R, Halligan NL, Halligan BD.

Biochem Biophys Res Commun. 1993 May 28;193(1):139-45.

PMID:
8503900
45.
46.
47.

Topoisomerase II is a structural component of mitotic chromosome scaffolds.

Earnshaw WC, Halligan B, Cooke CA, Heck MM, Liu LF.

J Cell Biol. 1985 May;100(5):1706-15.

48.

Purification and characterization of a type II DNA topoisomerase from bovine calf thymus.

Halligan BD, Edwards KA, Liu LF.

J Biol Chem. 1985 Feb 25;260(4):2475-82.

49.

Nonintercalative antitumor drugs interfere with the breakage-reunion reaction of mammalian DNA topoisomerase II.

Chen GL, Yang L, Rowe TC, Halligan BD, Tewey KM, Liu LF.

J Biol Chem. 1984 Nov 10;259(21):13560-6.

50.

Adriamycin-induced DNA damage mediated by mammalian DNA topoisomerase II.

Tewey KM, Rowe TC, Yang L, Halligan BD, Liu LF.

Science. 1984 Oct 26;226(4673):466-8.

PMID:
6093249

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