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Exome sequencing in newborns with congenital deafness as a model for genomic newborn screening: the Baby Beyond Hearing project.

Downie L, Halliday J, Lewis S, Lunke S, Lynch E, Martyn M, Gaff C, Jarmolowicz A, Amor DJ.

Genet Med. 2020 Jan 24. doi: 10.1038/s41436-019-0745-1. [Epub ahead of print]


AE Succinimide, an Analogue of Methyllycaconitine, When Bound Generates a Nonconducting Conformation of the α4β2 Nicotinic Acetylcholine Receptor.

Qudah T, Quek GX, Indurthi D, Karim N, Halliday JI, Absalom N, McLeod MD, Chebib M.

ACS Chem Neurosci. 2020 Jan 14. doi: 10.1021/acschemneuro.9b00525. [Epub ahead of print]


American Heart Association ideal cardiovascular health score and subclinical atherosclerosis in 22-35-year-old adults conceived with and without assisted reproductive technologies.

Juonala M, Lewis S, McLachlan R, Hammarberg K, Kennedy J, Saffery R, McBain J, Welsh L, Cheung M, Doyle LW, Amor DJ, Burgner DP, Halliday J.

Hum Reprod. 2019 Dec 13. pii: dez240. doi: 10.1093/humrep/dez240. [Epub ahead of print]


Exome sequencing in infants with congenital hearing impairment: a population-based cohort study.

Downie L, Halliday J, Burt R, Lunke S, Lynch E, Martyn M, Poulakis Z, Gaff C, Sung V, Wake M, Hunter MF, Saunders K, Rose E, Lewis S, Jarmolowicz A, Phelan D, Rehm HL; Melbourne Genomics Health Alliance, Amor DJ.

Eur J Hum Genet. 2019 Dec 12. doi: 10.1038/s41431-019-0553-8. [Epub ahead of print]


Abstracts of the 29th World Congress on Ultrasound in Obstetrics and Gynecology, 12-16 October 2019, Berlin, Germany.

Hui L, Lindquist A, Poulton A, Kluckow E, Hutchinson B, Bonacquisto L, Pertile MD, Gugasyan L, Kulkarni A, Harraway J, Howden A, McCoy R, da Silva Costa F, Palma-Dias R, Nisbet D, Martin N, Behune M, Poulakis Z, Halliday J.

Ultrasound Obstet Gynecol. 2019 Oct;54 Suppl 1:1-462. doi: 10.1002/uog.20426. No abstract available.


Association between timing of diagnosis of trisomy 21, 18, and 13 and maternal socio-economic status in Victoria, Australia: A population-based cohort study from 2015 to 2016.

Kluckow E, Halliday J, Poulton A, Lindquist A, Hutchinson B, Bethune M, Bonacquisto L, Da Silva Costa F, Gugasyan L, Harraway J, Howden A, Kulkarni A, Martin N, McCoy R, Menezes M, Nisbet D, Palma-Dias R, Pertile MD, Poulakis Z, Hui L.

Prenat Diagn. 2019 Dec;39(13):1254-1261. doi: 10.1002/pd.5577. Epub 2019 Nov 6.


CLIPPERS: A case report with radiology, three serial biopsies and a literature review.

Turnquist C, Pretorius PM, DeLuca GC, Halliday J, Kerr R, Hofer M.

Clin Neuropathol. 2020 Jan/Feb;39(1):19-24. doi: 10.5414/NP301219.


State-wide utilization and performance of traditional and cell-free DNA-based prenatal testing pathways: the Victorian Perinatal Record Linkage (PeRL) study.

Hui L, Lindquist A, Poulton A, Kluckow E, Hutchinson B, Pertile MD, Bonacquisto L, Gugasyan L, Kulkarni A, Harraway J, Howden A, McCoy R, da Silva Costa F, Menezes M, Palma-Dias R, Nisbet D, Martin N, Bethune M, Poulakis Z, Halliday J.

Ultrasound Obstet Gynecol. 2019 Oct 17. doi: 10.1002/uog.21899. [Epub ahead of print]


Sex discordance between cell-free fetal DNA and mid-trimester ultrasound: a modern conundrum.

Ayala NK, Kole MB, Forcier M, Halliday J, Russo ML.

Prenat Diagn. 2019 Oct 16. doi: 10.1002/pd.5576. [Epub ahead of print] No abstract available.


Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania.

Theonest NO, Carter RW, Amani N, Doherty SL, Hugho E, Keyyu JD, Mable BK, Shirima GM, Tarimo R, Thomas KM, Haydon DT, Buza JJ, Allan KJ, Halliday JEB.

PLoS One. 2019 Oct 15;14(10):e0223667. doi: 10.1371/journal.pone.0223667. eCollection 2019.


Assisted reproductive technologies are associated with limited epigenetic variation at birth that largely resolves by adulthood.

Novakovic B, Lewis S, Halliday J, Kennedy J, Burgner DP, Czajko A, Kim B, Sexton-Oates A, Juonala M, Hammarberg K, Amor DJ, Doyle LW, Ranganathan S, Welsh L, Cheung M, McBain J, McLachlan R, Saffery R.

Nat Commun. 2019 Sep 2;10(1):3922. doi: 10.1038/s41467-019-11929-9.


A new technique of endoscopic decompression of suprasellar craniopharyngioma cyst.

Halliday J, Cudlip S.

Acta Neurochir (Wien). 2019 Nov;161(11):2285-2288. doi: 10.1007/s00701-019-04024-x. Epub 2019 Aug 4.


Transcription fidelity: New paradigms in epigenetic inheritance, genome instability and disease.

Bradley CC, Gordon AJE, Halliday JA, Herman C.

DNA Repair (Amst). 2019 Sep;81:102652. doi: 10.1016/j.dnarep.2019.102652. Epub 2019 Jul 8. Review.


Reply to letter to the editor in response to the article "Communication-based interventions for increasing influenza vaccination rates among Aboriginal children: A randomised controlled trial".

Borg K, Sutton K, Beasley M, Tull F, Faulkner N, Halliday J, Knott C, Bragge P.

Vaccine. 2019 Jun 6;37(26):3382. doi: 10.1016/j.vaccine.2019.05.008. No abstract available.


Health of adults aged 22 to 35 years conceived by assisted reproductive technology.

Halliday J, Lewis S, Kennedy J, Burgner DP, Juonala M, Hammarberg K, Amor DJ, Doyle LW, Saffery R, Ranganathan S, Welsh L, Cheung M, McBain J, Hearps SJC, McLachlan R.

Fertil Steril. 2019 Jul;112(1):130-139. doi: 10.1016/j.fertnstert.2019.03.001. Epub 2019 Apr 16.


Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system.

Behdenna A, Lembo T, Calatayud O, Cleaveland S, Halliday JEB, Packer C, Lankester F, Hampson K, Craft ME, Czupryna A, Dobson AP, Dubovi EJ, Ernest E, Fyumagwa R, Hopcraft JGC, Mentzel C, Mzimbiri I, Sutton D, Willett B, Haydon DT, Viana M.

Proc Biol Sci. 2019 Mar 27;286(1899):20182772. doi: 10.1098/rspb.2018.2772.


Short Message Service Reminders to Parents for Increasing Adolescent Human Papillomavirus Vaccination Rates in a Secondary School Vaccine Program: A Randomized Control Trial.

Tull F, Borg K, Knott C, Beasley M, Halliday J, Faulkner N, Sutton K, Bragge P.

J Adolesc Health. 2019 Jul;65(1):116-123. doi: 10.1016/j.jadohealth.2018.12.026. Epub 2019 Mar 14.


A novel approach to offering additional genomic findings-A protocol to test a two-step approach in the healthcare system.

Martyn M, Kanga-Parabia A, Lynch E, James PA, Macciocca I, Trainer AH, Halliday J, Keogh L, Wale J, Winship I, Bogwitz M, Valente G, Walsh M, Downie L, Amor D, Wallis M, Cunningham F, Burgess M, Brown NJ, Jarmolowicz A, Lunke S, Goranitis I; Melbourne Genomics Health Alliance, Gaff CL.

J Genet Couns. 2019 Apr;28(2):388-397. doi: 10.1002/jgc4.1102. Epub 2019 Feb 18.


Improving women's knowledge about prenatal screening in the era of non-invasive prenatal testing for Down syndrome - development and acceptability of a low literacy decision aid.

Smith SK, Cai A, Wong M, Sousa MS, Peate M, Welsh A, Meiser B, Kaur R, Halliday J, Lewis S, Trevena L, Yanes T, Barlow-Stewart K, Barclay M.

BMC Pregnancy Childbirth. 2018 Dec 17;18(1):499. doi: 10.1186/s12884-018-2135-0.


Toxoplasma gondii seroprevalence among pregnant women attending antenatal clinic in Northern Tanzania.

Paul E, Kiwelu I, Mmbaga B, Nazareth R, Sabuni E, Maro A, Ndaro A, Halliday JEB, Chilongola J.

Trop Med Health. 2018 Nov 19;46:39. doi: 10.1186/s41182-018-0122-9. eCollection 2018.


Pooling and patient satisfaction in non-instrumented lumbar decompressive surgery.

Halliday J, Holsgrove D.

Br J Neurosurg. 2019 Feb;33(1):8-11. doi: 10.1080/02688697.2018.1527014. Epub 2018 Nov 19.


Long-term follow-up of ICSI-conceived offspring compared with spontaneously conceived offspring: a systematic review of health outcomes beyond the neonatal period.

Catford SR, McLachlan RI, O'Bryan MK, Halliday JL.

Andrology. 2018 Sep;6(5):635-653. doi: 10.1111/andr.12526. Epub 2018 Sep 17.


Communication-based interventions for increasing influenza vaccination rates among Aboriginal children: A randomised controlled trial.

Borg K, Sutton K, Beasley M, Tull F, Faulkner N, Halliday J, Knott C, Bragge P.

Vaccine. 2018 Oct 29;36(45):6790-6795. doi: 10.1016/j.vaccine.2018.09.020. Epub 2018 Sep 29.


What do pregnant women eat, and are they meeting the recommended dietary requirements for pregnancy?

Lee A, Muggli E, Halliday J, Lewis S, Gasparini E, Forster D.

Midwifery. 2018 Dec;67:70-76. doi: 10.1016/j.midw.2018.09.005. Epub 2018 Sep 15.


Population-based trends in the prenatal diagnosis of sex chromosome aneuploidy before and after non-invasive prenatal testing.

Howard-Bath A, Poulton A, Halliday J, Hui L.

Prenat Diagn. 2018 Dec;38(13):1062-1068. doi: 10.1002/pd.5363. Epub 2018 Oct 30.


Prenatal and preimplantation genetic diagnosis for single gene disorders: A population-based study from 1977 to 2016.

Poulton A, Lewis S, Hui L, Halliday JL.

Prenat Diagn. 2018 Nov;38(12):904-910. doi: 10.1002/pd.5352. Epub 2018 Sep 24.


Engaging pregnant women in observational research: a qualitative exploratory study.

Muggli E, Curd H, Nagle C, Forster D, Halliday J.

BMC Pregnancy Childbirth. 2018 Aug 16;18(1):334. doi: 10.1186/s12884-018-1966-z.


How Acts of Infidelity Promote DNA Break Repair: Collision and Collusion Between DNA Repair and Transcription.

Sivaramakrishnan P, Gordon AJE, Halliday JA, Herman C.

Bioessays. 2018 Oct;40(10):e1800045. doi: 10.1002/bies.201800045. Epub 2018 Aug 9. Review.


Genetic map-guided genome assembly reveals a virulence-governing minichromosome in the lentil anthracnose pathogen Colletotrichum lentis.

Bhadauria V, MacLachlan R, Pozniak C, Cohen-Skalie A, Li L, Halliday J, Banniza S.

New Phytol. 2019 Jan;221(1):431-445. doi: 10.1111/nph.15369. Epub 2018 Aug 4.


Mapping the Spectrum of Prenatal Alcohol Effects with Dense Surface Models of the Face and Brain.

Matthews H, Muggli E, Halliday J, Claes P.

Alcohol Clin Exp Res. 2018 Oct;42(10):1880-1882. doi: 10.1111/acer.13848. Epub 2018 Aug 16. No abstract available.


Time- and sex-dependent associations between prenatal alcohol exposure and placental global DNA methylation.

Loke YJ, Muggli E, Nguyen L, Ryan J, Saffery R, Elliott EJ, Halliday J, Craig JM.

Epigenomics. 2018 Jul;10(7):981-991. doi: 10.2217/epi-2017-0147. Epub 2018 Jun 29.


Transcription infidelity and genome integrity: the parallax view.

Gordon AJE, Sivaramakrishnan P, Halliday JA, Herman C.

Transcription. 2018;9(5):315-320. doi: 10.1080/21541264.2018.1491251. Epub 2018 Aug 10.


Risk factors for human acute leptospirosis in northern Tanzania.

Maze MJ, Cash-Goldwasser S, Rubach MP, Biggs HM, Galloway RL, Sharples KJ, Allan KJ, Halliday JEB, Cleaveland S, Shand MC, Muiruri C, Kazwala RR, Saganda W, Lwezaula BF, Mmbaga BT, Maro VP, Crump JA.

PLoS Negl Trop Dis. 2018 Jun 7;12(6):e0006372. doi: 10.1371/journal.pntd.0006372. eCollection 2018 Jun.


Assessment of animal hosts of pathogenic Leptospira in northern Tanzania.

Allan KJ, Halliday JEB, Moseley M, Carter RW, Ahmed A, Goris MGA, Hartskeerl RA, Keyyu J, Kibona T, Maro VP, Maze MJ, Mmbaga BT, Tarimo R, Crump JA, Cleaveland S.

PLoS Negl Trop Dis. 2018 Jun 7;12(6):e0006444. doi: 10.1371/journal.pntd.0006444. eCollection 2018 Jun.


Population-based trends in invasive prenatal diagnosis for ultrasound-based indications: two decades of change from 1994 to 2016.

Lostchuck E, Poulton A, Halliday J, Hui L.

Ultrasound Obstet Gynecol. 2019 Apr;53(4):503-511. doi: 10.1002/uog.19107.


A comparison of Australian and French families affected by sarcoma: perceptions of genetics and incidental findings.

Rasmussen V, Forrest LE, Rogasik M, Girodet M, Meeus P, Sunyach MP, Blay JY, Bally O, Brahmi M, Ballinger ML, Niedermayr E, Thomas DM, Halliday J, James P, Ray-Coquard I, Young MA; International Sarcoma Kindred Study.

Per Med. 2018 Jan;15(1):13-24. doi: 10.2217/pme-2017-0035.


Incidence of human brucellosis in the Kilimanjaro Region of Tanzania in the periods 2007-2008 and 2012-2014.

Carugati M, Biggs HM, Maze MJ, Stoddard RA, Cash-Goldwasser S, Hertz JT, Halliday JEB, Saganda W, Lwezaula BF, Kazwala RR, Cleaveland S, Maro VP, Rubach MP, Crump JA.

Trans R Soc Trop Med Hyg. 2018 Mar 1;112(3):136-143. doi: 10.1093/trstmh/try033.


A protocol for whole-exome sequencing in newborns with congenital deafness: a prospective population-based cohort.

Downie L, Halliday JL, Burt RA, Lunke S, Lynch E, Martyn M, Poulakis Z, Gaff C, Sung V, Wake M, Hunter M, Saunders K, Rose E, Rehm HL, Amor DJ.

BMJ Paediatr Open. 2017 Sep 14;1(1):e000119. doi: 10.1136/bmjpo-2017-000119. eCollection 2017.


Offering pregnant women different levels of genetic information from prenatal chromosome microarray: a prospective study.

Halliday JL, Muller C, Charles T, Norris F, Kennedy J, Lewis S, Meiser B, Donath S, Stark Z, McGillivray G, Menezes M, Smith SK, Forster D, Walker S, Pertile M, Amor DJ.

Eur J Hum Genet. 2018 Apr;26(4):485-494. doi: 10.1038/s41431-017-0084-0. Epub 2018 Feb 6.


Prenatal diagnosis and socioeconomic status in the non-invasive prenatal testing era: A population-based study.

Hui L, Barclay J, Poulton A, Hutchinson B, Halliday JL.

Aust N Z J Obstet Gynaecol. 2018 Aug;58(4):404-410. doi: 10.1111/ajo.12778. Epub 2018 Jan 30.


Risk Factors for Human Brucellosis in Northern Tanzania.

Cash-Goldwasser S, Maze MJ, Rubach MP, Biggs HM, Stoddard RA, Sharples KJ, Halliday JEB, Cleaveland S, Shand MC, Mmbaga BT, Muiruri C, Saganda W, Lwezaula BF, Kazwala RR, Maro VP, Crump JA.

Am J Trop Med Hyg. 2018 Feb;98(2):598-606. doi: 10.4269/ajtmh.17-0125. Epub 2017 Dec 7.


An update on the diagnosis and treatment of vestibular schwannoma.

Halliday J, Rutherford SA, McCabe MG, Evans DG.

Expert Rev Neurother. 2018 Jan;18(1):29-39. doi: 10.1080/14737175.2018.1399795. Epub 2017 Nov 7. Review.


DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP.

Girard ME, Gopalkrishnan S, Grace ED, Halliday JA, Gourse RL, Herman C.

J Bacteriol. 2017 Dec 20;200(2). pii: e00463-17. doi: 10.1128/JB.00463-17. Print 2018 Jan 15.


The transcription fidelity factor GreA impedes DNA break repair.

Sivaramakrishnan P, Sepúlveda LA, Halliday JA, Liu J, Núñez MAB, Golding I, Rosenberg SM, Herman C.

Nature. 2017 Oct 12;550(7675):214-218. doi: 10.1038/nature23907. Epub 2017 Oct 4.


Clinical review of 24-35 year olds conceived with and without in vitro fertilization: study protocol.

Lewis S, Kennedy J, Burgner D, McLachlan R, Ranganathan S, Hammarberg K, Saffery R, Amor DJ, Cheung MMH, Doyle LW, Juonala M, Donath S, McBain J, Halliday J.

Reprod Health. 2017 Sep 20;14(1):117. doi: 10.1186/s12978-017-0377-3. Review.


Alcohol consumption in a general antenatal population and child neurodevelopment at 2 years.

Halliday JL, Muggli E, Lewis S, Elliott EJ, Amor DJ, O'Leary C, Donath S, Forster D, Nagle C, Craig JM, Anderson PJ.

J Epidemiol Community Health. 2017 Oct;71(10):990-998. doi: 10.1136/jech-2017-209165. Epub 2017 Aug 24.


NAD Deficiency, Congenital Malformations, and Niacin Supplementation.

Shi H, Enriquez A, Rapadas M, Martin EMMA, Wang R, Moreau J, Lim CK, Szot JO, Ip E, Hughes JN, Sugimoto K, Humphreys DT, McInerney-Leo AM, Leo PJ, Maghzal GJ, Halliday J, Smith J, Colley A, Mark PR, Collins F, Sillence DO, Winlaw DS, Ho JWK, Guillemin GJ, Brown MA, Kikuchi K, Thomas PQ, Stocker R, Giannoulatou E, Chapman G, Duncan EL, Sparrow DB, Dunwoodie SL.

N Engl J Med. 2017 Aug 10;377(6):544-552. doi: 10.1056/NEJMoa1616361.


Validation of the WHO-5 as a first-step screening instrument for depression in adults with diabetes: Results from Diabetes MILES - Australia.

Halliday JA, Hendrieckx C, Busija L, Browne JL, Nefs G, Pouwer F, Speight J.

Diabetes Res Clin Pract. 2017 Oct;132:27-35. doi: 10.1016/j.diabres.2017.07.005. Epub 2017 Jul 8.


Psychosocial and behavioral impact of breast cancer risk assessed by testing for common risk variants: protocol of a prospective study.

Yanes T, Meiser B, Young MA, Kaur R, Mitchell G, Barlow-Stewart K, Roscioli T, Halliday J, James P.

BMC Cancer. 2017 Jul 18;17(1):491. doi: 10.1186/s12885-017-3485-0.

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