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Metabolomics should be deployed in identification and characterization of gene-edited crops.

Fraser PD, Aharoni A, Hall RD, Huang S, Giovannoni JJ, Sonnewald U, Fernie AR.

Plant J. 2020 Jan 10. doi: 10.1111/tpj.14679. [Epub ahead of print]


Green and White Asparagus (Asparagus officinalis): A Source of Developmental, Chemical and Urinary Intrigue.

Pegiou E, Mumm R, Acharya P, de Vos RCH, Hall RD.

Metabolites. 2019 Dec 25;10(1). pii: E17. doi: 10.3390/metabo10010017. Review.


Identification of Bioactive Phytochemicals in Mulberries.

D'Urso G, Mes JJ, Montoro P, Hall RD, de Vos RCH.

Metabolites. 2019 Dec 20;10(1). pii: E7. doi: 10.3390/metabo10010007.


Clinical and Radiographic Response of Leptomeningeal and Brain Metastases to Encorafenib and Binimetinib in a Patient With BRAF V600E-Mutated Lung Adenocarcinoma.

McLoughlin EM, Fadul CE, Patel SH, Hall RD, Gentzler RD.

J Thorac Oncol. 2019 Dec;14(12):e269-e271. doi: 10.1016/j.jtho.2019.07.019. No abstract available.


The Effect of Calcium Buffering and Calcium Sensor Type on the Sensitivity of an Array-Based Bitter Receptor Screening Assay.

Roelse M, Wehrens R, Henquet MG, Witkamp RF, Hall RD, Jongsma MA.

Chem Senses. 2019 Sep 7;44(7):497-505. doi: 10.1093/chemse/bjz044.


The Metabolomics Society-Current State of the Membership and Future Directions.

Zanetti KA, Hall RD, Griffin JL, Putri S, Salek RM, Styczynski MP, Tugizimana F, van der Hooft JJJ.

Metabolites. 2019 May 3;9(5). pii: E89. doi: 10.3390/metabo9050089.


Treatment of Refractory ALK Rearranged Anaplastic Large Cell Lymphoma With Alectinib.

Reed DR, Hall RD, Gentzler RD, Volodin L, Douvas MG, Portell CA.

Clin Lymphoma Myeloma Leuk. 2019 Jun;19(6):e247-e250. doi: 10.1016/j.clml.2019.03.001. Epub 2019 Mar 11. No abstract available.


Mass spectrometry-based metabolomics of volatiles as a new tool for understanding aroma and flavour chemistry in processed food products.

Diez-Simon C, Mumm R, Hall RD.

Metabolomics. 2019 Mar 12;15(3):41. doi: 10.1007/s11306-019-1493-6. Review.


Tyrosine Kinase Inhibition in a Lung Adenocarcinoma Patient With Dual G719S and S768I EGFR Mutations.

Zaemes J, Hall RD, Gentzler RD.

J Thorac Oncol. 2018 Aug;13(8):e136-e137. doi: 10.1016/j.jtho.2018.03.021. No abstract available.


Engineering de novo anthocyanin production in Saccharomyces cerevisiae.

Levisson M, Patinios C, Hein S, de Groot PA, Daran JM, Hall RD, Martens S, Beekwilder J.

Microb Cell Fact. 2018 Jul 3;17(1):103. doi: 10.1186/s12934-018-0951-6.


Laser Ablation Electrospray Ionization-Mass Spectrometry Imaging (LAESI-MS) for Spatially Resolved Plant Metabolomics.

Etalo DW, Díez-Simón C, de Vos RCH, Hall RD.

Methods Mol Biol. 2018;1778:253-267. doi: 10.1007/978-1-4939-7819-9_18.


Effect of dietary fiber (inulin) addition on phenolics and in vitro bioaccessibility of tomato sauce.

Tomas M, Beekwilder J, Hall RD, Diez Simon C, Sagdic O, Capanoglu E.

Food Res Int. 2018 Apr;106:129-135. doi: 10.1016/j.foodres.2017.12.050. Epub 2017 Dec 18.


Calcium Imaging of GPCR Activation Using Arrays of Reverse Transfected HEK293 Cells in a Microfluidic System.

Roelse M, Henquet MGL, Verhoeven HA, de Ruijter NCA, Wehrens R, van Lenthe MS, Witkamp RF, Hall RD, Jongsma MA.

Sensors (Basel). 2018 Feb 16;18(2). pii: E602. doi: 10.3390/s18020602.


Metabolic responses of Eucalyptus species to different temperature regimes.

Mokochinski JB, Mazzafera P, Sawaya ACHF, Mumm R, de Vos RCH, Hall RD.

J Integr Plant Biol. 2018 May;60(5):397-411. doi: 10.1111/jipb.12626. Epub 2018 Feb 9.


Transcription Factor-Mediated Control of Anthocyanin Biosynthesis in Vegetative Tissues.

Outchkourov NS, Karlova R, Hölscher M, Schrama X, Blilou I, Jongedijk E, Simon CD, van Dijk ADJ, Bosch D, Hall RD, Beekwilder J.

Plant Physiol. 2018 Feb;176(2):1862-1878. doi: 10.1104/pp.17.01662. Epub 2017 Nov 30.


Automated assembly of species metabolomes through data submission into a public repository.

Salek RM, Conesa P, Cochrane K, Haug K, Williams M, Kale N, Moreno P, Jayaseelan KV, Macias JR, Nainala VC, Hall RD, Reed LK, Viant MR, O'Donovan C, Steinbeck C.

Gigascience. 2017 Aug 1;6(8):1-4. doi: 10.1093/gigascience/gix062.


A Multidisciplinary Phenotyping and Genotyping Analysis of a Mapping Population Enables Quality to Be Combined with Yield in Rice.

Calingacion M, Mumm R, Tan K, Quiatchon-Baeza L, Concepcion JCT, Hageman JA, Prakash S, Fitzgerald M, Hall RD.

Front Mol Biosci. 2017 May 22;4:32. doi: 10.3389/fmolb.2017.00032. eCollection 2017.


Arabidopsis myrosinases link the glucosinolate-myrosinase system and the cuticle.

Ahuja I, de Vos RC, Rohloff J, Stoopen GM, Halle KK, Ahmad SJ, Hoang L, Hall RD, Bones AM.

Sci Rep. 2016 Dec 15;6:38990. doi: 10.1038/srep38990.


Processing black mulberry into jam: effects on antioxidant potential and in vitro bioaccessibility.

Tomas M, Toydemir G, Boyacioglu D, Hall RD, Beekwilder J, Capanoglu E.

J Sci Food Agric. 2017 Aug;97(10):3106-3113. doi: 10.1002/jsfa.8152. Epub 2017 Feb 8.


A comprehensive microbiological safety approach for agarose encapsulated porcine islets intended for clinical trials.

Gazda LS, Collins J, Lovatt A, Holdcraft RW, Morin MJ, Galbraith D, Graham M, Laramore MA, Maclean C, Black J, Milne EW, Marthaler DG, Vinerean HV, Michalak MM, Hoffer D, Richter S, Hall RD, Smith BH.

Xenotransplantation. 2016 Nov;23(6):444-463. doi: 10.1111/xen.12277. Epub 2016 Nov 11.


Industrial processing versus home processing of tomato sauce: Effects on phenolics, flavonoids and in vitro bioaccessibility of antioxidants.

Tomas M, Beekwilder J, Hall RD, Sagdic O, Boyacioglu D, Capanoglu E.

Food Chem. 2017 Apr 1;220:51-58. doi: 10.1016/j.foodchem.2016.09.201. Epub 2016 Sep 29.


Parameter estimation in tree graph metabolic networks.

Astola L, Stigter H, Gomez Roldan MV, van Eeuwijk F, Hall RD, Groenenboom M, Molenaar JJ.

PeerJ. 2016 Sep 20;4:e2417. doi: 10.7717/peerj.2417. eCollection 2016.


Development of an open technology sensor suite for assisted living: a student-led research project.

Manton JD, Hughes JA, Bonner O, Amjad OA, Mair P, Miele I, Wang T, Levdik V, Hall RD, Baekelandt G, Vasconcellos Fda C, Hadeler O, Hutter T, Kaminski CF.

Interface Focus. 2016 Aug 6;6(4):20160018. doi: 10.1098/rsfs.2016.0018.


Metabolomics meets functional assays: coupling LC-MS and microfluidic cell-based receptor-ligand analyses.

Henquet MGL, Roelse M, de Vos RCH, Schipper A, Polder G, de Ruijter NCA, Hall RD, Jongsma MA.

Metabolomics. 2016;12:115. doi: 10.1007/s11306-016-1057-y. Epub 2016 Jun 22.


Improved batch correction in untargeted MS-based metabolomics.

Wehrens R, Hageman JA, van Eeuwijk F, Kooke R, Flood PJ, Wijnker E, Keurentjes JJ, Lommen A, van Eekelen HD, Hall RD, Mumm R, de Vos RC.

Metabolomics. 2016;12:88. Epub 2016 Mar 18.


The Time Is Right to Focus on Model Organism Metabolomes.

Edison AS, Hall RD, Junot C, Karp PD, Kurland IJ, Mistrik R, Reed LK, Saito K, Salek RM, Steinbeck C, Sumner LW, Viant MR.

Metabolites. 2016 Feb 15;6(1). pii: E8. doi: 10.3390/metabo6010008.


Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics.

Mumm R, Hageman JA, Calingacion MN, de Vos RCH, Jonker HH, Erban A, Kopka J, Hansen TH, Laursen KH, Schjoerring JK, Ward JL, Beale MH, Jongee S, Rauf A, Habibi F, Indrasari SD, Sakhan S, Ramli A, Romero M, Reinke RF, Ohtsubo K, Boualaphanh C, Fitzgerald MA, Hall RD.

Metabolomics. 2016;12:38. doi: 10.1007/s11306-015-0925-1. Epub 2016 Jan 23.


Angiogenesis inhibition as a therapeutic strategy in non-small cell lung cancer (NSCLC).

Hall RD, Le TM, Haggstrom DE, Gentzler RD.

Transl Lung Cancer Res. 2015 Oct;4(5):515-23. doi: 10.3978/j.issn.2218-6751.2015.06.09. Review.


Spatially Resolved Plant Metabolomics: Some Potentials and Limitations of Laser-Ablation Electrospray Ionization Mass Spectrometry Metabolite Imaging.

Etalo DW, De Vos RC, Joosten MH, Hall RD.

Plant Physiol. 2015 Nov;169(3):1424-35. doi: 10.1104/pp.15.01176. Epub 2015 Sep 21.


A Review on the Effect of Drying on Antioxidant Potential of Fruits and Vegetables.

Kamiloglu S, Toydemir G, Boyacioglu D, Beekwilder J, Hall RD, Capanoglu E.

Crit Rev Food Sci Nutr. 2016 Jul 29;56 Suppl 1:S110-29. doi: 10.1080/10408398.2015.1045969. Review.


Delving deeper into technological innovations to understand differences in rice quality.

Calingacion M, Fang L, Quiatchon-Baeza L, Mumm R, Riedel A, Hall RD, Fitzgerald M.

Rice (N Y). 2015 Dec;8(1):43. doi: 10.1186/s12284-015-0043-8. Epub 2015 Jan 29.


Control of anthocyanin and non-flavonoid compounds by anthocyanin-regulating MYB and bHLH transcription factors in Nicotiana benthamiana leaves.

Outchkourov NS, Carollo CA, Gomez-Roldan V, de Vos RC, Bosch D, Hall RD, Beekwilder J.

Front Plant Sci. 2014 Oct 8;5:519. doi: 10.3389/fpls.2014.00519. eCollection 2014.


An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato.

Gomez Roldan MV, Outchkourov N, van Houwelingen A, Lammers M, Romero de la Fuente I, Ziklo N, Aharoni A, Hall RD, Beekwilder J.

Plant J. 2014 Nov;80(4):695-708. doi: 10.1111/tpj.12664. Epub 2014 Oct 15.


Comprehensive metabolomics to evaluate the impact of industrial processing on the phytochemical composition of vegetable purees.

Lopez-Sanchez P, de Vos RC, Jonker HH, Mumm R, Hall RD, Bialek L, Leenman R, Strassburg K, Vreeken R, Hankemeier T, Schumm S, van Duynhoven J.

Food Chem. 2015 Feb 1;168:348-55. doi: 10.1016/j.foodchem.2014.07.076. Epub 2014 Jul 24.


No evidence of viral transmission following long-term implantation of agarose encapsulated porcine islets in diabetic dogs.

Gazda LS, Vinerean HV, Laramore MA, Hall RD, Carraway JW, Smith BH.

J Diabetes Res. 2014;2014:727483. doi: 10.1155/2014/727483. Epub 2014 Jun 5.


Pravastatin improves glucose regulation and biocompatibility of agarose encapsulated porcine islets following transplantation into pancreatectomized dogs.

Gazda LS, Vinerean HV, Laramore MA, Hall RD, Carraway JW, Smith BH.

J Diabetes Res. 2014;2014:405362. doi: 10.1155/2014/405362. Epub 2014 May 19.


BRAF mutations: signaling, epidemiology, and clinical experience in multiple malignancies.

Hall RD, Kudchadkar RR.

Cancer Control. 2014 Jul;21(3):221-30. Review.


Plant metabolomics is not ripe for environmental risk assessment.

Hall RD, de Maagd RA.

Trends Biotechnol. 2014 Aug;32(8):391-2. doi: 10.1016/j.tibtech.2014.05.002. Epub 2014 Jun 4.


Polycistronic expression of a β-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to β-ionone production.

Beekwilder J, van Rossum HM, Koopman F, Sonntag F, Buchhaupt M, Schrader J, Hall RD, Bosch D, Pronk JT, van Maris AJ, Daran JM.

J Biotechnol. 2014 Dec 20;192 Pt B:383-92. doi: 10.1016/j.jbiotec.2013.12.016. Epub 2014 Jan 28.


Diversity of global rice markets and the science required for consumer-targeted rice breeding.

Calingacion M, Laborte A, Nelson A, Resurreccion A, Concepcion JC, Daygon VD, Mumm R, Reinke R, Dipti S, Bassinello PZ, Manful J, Sophany S, Lara KC, Bao J, Xie L, Loaiza K, El-hissewy A, Gayin J, Sharma N, Rajeswari S, Manonmani S, Rani NS, Kota S, Indrasari SD, Habibi F, Hosseini M, Tavasoli F, Suzuki K, Umemoto T, Boualaphanh C, Lee HH, Hung YP, Ramli A, Aung PP, Ahmad R, Wattoo JI, Bandonill E, Romero M, Brites CM, Hafeel R, Lur HS, Cheaupun K, Jongdee S, Blanco P, Bryant R, Thi Lang N, Hall RD, Fitzgerald M.

PLoS One. 2014 Jan 14;9(1):e85106. doi: 10.1371/journal.pone.0085106. eCollection 2014.


Metabolomics in melon: a new opportunity for aroma analysis.

Allwood JW, Cheung W, Xu Y, Mumm R, De Vos RC, Deborde C, Biais B, Maucourt M, Berger Y, Schaffer AA, Rolin D, Moing A, Hall RD, Goodacre R.

Phytochemistry. 2014 Mar;99:61-72. doi: 10.1016/j.phytochem.2013.12.010. Epub 2014 Jan 10.


Investigating the transport dynamics of anthocyanins from unprocessed fruit and processed fruit juice from sour cherry (Prunus cerasus L.) across intestinal epithelial cells.

Toydemir G, Boyacioglu D, Capanoglu E, van der Meer IM, Tomassen MM, Hall RD, Mes JJ, Beekwilder J.

J Agric Food Chem. 2013 Nov 27;61(47):11434-41. doi: 10.1021/jf4032519. Epub 2013 Nov 14.


Non-smoky glycosyltransferase1 prevents the release of smoky aroma from tomato fruit.

Tikunov YM, Molthoff J, de Vos RC, Beekwilder J, van Houwelingen A, van der Hooft JJ, Nijenhuis-de Vries M, Labrie CW, Verkerke W, van de Geest H, Viquez Zamora M, Presa S, Rambla JL, Granell A, Hall RD, Bovy AG.

Plant Cell. 2013 Aug;25(8):3067-78. doi: 10.1105/tpc.113.114231. Epub 2013 Aug 16.


Enhancement of in vitro and in vivo function of agarose-encapsulated porcine islets by changes in the islet microenvironment.

Holdcraft RW, Gazda LS, Circle L, Adkins H, Harbeck SG, Meyer ED, Bautista MA, Martis PC, Laramore MA, Vinerean HV, Hall RD, Smith BH.

Cell Transplant. 2014;23(8):929-44. doi: 10.3727/096368913X667033. Epub 2013 Apr 29.


Changes in polyphenol content during production of grape juice concentrate.

Capanoglu E, de Vos RC, Hall RD, Boyacioglu D, Beekwilder J.

Food Chem. 2013 Aug 15;139(1-4):521-6. doi: 10.1016/j.foodchem.2013.01.023. Epub 2013 Jan 23.


Beyond the standard of care: a review of novel immunotherapy trials for the treatment of lung cancer.

Hall RD, Gray JE, Chiappori AA.

Cancer Control. 2013 Jan;20(1):22-31. Review.


De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae.

Koopman F, Beekwilder J, Crimi B, van Houwelingen A, Hall RD, Bosch D, van Maris AJ, Pronk JT, Daran JM.

Microb Cell Fact. 2012 Dec 8;11:155. doi: 10.1186/1475-2859-11-155.


Correlation of rutin accumulation with 3-O-glucosyl transferase and phenylalanine ammonia-lyase activities during the ripening of tomato fruit.

Capanoglu E, Beekwilder J, Matros A, Boyacioglu D, Hall RD, Mock HP.

Plant Foods Hum Nutr. 2012 Dec;67(4):371-6. doi: 10.1007/s11130-012-0321-1.


MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data.

Tikunov YM, Laptenok S, Hall RD, Bovy A, de Vos RC.

Metabolomics. 2012 Aug;8(4):714-718. Epub 2011 Oct 15.

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