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Items: 1 to 50 of 129

1.

Statistical Package for Growth Rates Made Easy.

Mira P, Barlow M, Meza JC, Hall BG.

Mol Biol Evol. 2017 Dec 1;34(12):3303-3309. doi: 10.1093/molbev/msx255.

2.

Population Dynamics of Staphylococcus aureus in Cystic Fibrosis Patients To Determine Transmission Events by Use of Whole-Genome Sequencing.

Ankrum A, Hall BG.

J Clin Microbiol. 2017 Jul;55(7):2143-2152. doi: 10.1128/JCM.00164-17. Epub 2017 Apr 26.

3.

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.

Gardner SN, Slezak T, Hall BG.

Bioinformatics. 2015 Sep 1;31(17):2877-8. doi: 10.1093/bioinformatics/btv271. Epub 2015 Apr 25.

PMID:
25913206
4.

Dead wrong: the growing list of racial/ethnic disparities in childhood mortality.

Flores G, Escala MK, Hall BG.

J Pediatr. 2015 Apr;166(4):790-3. doi: 10.1016/j.jpeds.2015.02.001. No abstract available.

5.

SNP-associations and phenotype predictions from hundreds of microbial genomes without genome alignments.

Hall BG.

PLoS One. 2014 Feb 28;9(2):e90490. doi: 10.1371/journal.pone.0090490. eCollection 2014.

6.
7.

Growth rates made easy.

Hall BG, Acar H, Nandipati A, Barlow M.

Mol Biol Evol. 2014 Jan;31(1):232-8. doi: 10.1093/molbev/mst187. Epub 2013 Oct 28.

PMID:
24170494
8.

Using complete genome comparisons to identify sequences whose presence accurately predicts clinically important phenotypes.

Hall BG, Cardenas H, Barlow M.

PLoS One. 2013 Jul 23;8(7):e68901. doi: 10.1371/journal.pone.0068901. Print 2013.

9.

Clustering acinetobacter strains by optical mapping.

Hall BG, Kirkup BC, Riley MC, Barlow M.

Genome Biol Evol. 2013;5(6):1176-84. doi: 10.1093/gbe/evt085.

10.

Building phylogenetic trees from molecular data with MEGA.

Hall BG.

Mol Biol Evol. 2013 May;30(5):1229-35. doi: 10.1093/molbev/mst012. Epub 2013 Mar 13.

PMID:
23486614
11.

Designing antibiotic cycling strategies by determining and understanding local adaptive landscapes.

Goulart CP, Mahmudi M, Crona KA, Jacobs SD, Kallmann M, Hall BG, Greene DC, Barlow M.

PLoS One. 2013;8(2):e56040. doi: 10.1371/journal.pone.0056040. Epub 2013 Feb 13.

12.

α-Galacturonidase(s): a new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif.

Thompson J, Pikis A, Rich J, Hall BG, Withers SG.

FEBS Lett. 2013 Mar 18;587(6):799-803. doi: 10.1016/j.febslet.2013.02.004. Epub 2013 Feb 14.

13.

Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars.

Ahmed A, Earl J, Retchless A, Hillier SL, Rabe LK, Cherpes TL, Powell E, Janto B, Eutsey R, Hiller NL, Boissy R, Dahlgren ME, Hall BG, Costerton JW, Post JC, Hu FZ, Ehrlich GD.

J Bacteriol. 2012 Aug;194(15):3922-37. doi: 10.1128/JB.00056-12. Epub 2012 May 18.

14.

Remembrances of Walter M. Fitch.

Hall BG, Ayala FJ, McClure MA.

Mol Biol Evol. 2011 Dec;28(12):3405-9. doi: 10.1093/molbev/msr260. No abstract available.

PMID:
22084140
15.

Inadequacies of minimum spanning trees in molecular epidemiology.

Salipante SJ, Hall BG.

J Clin Microbiol. 2011 Oct;49(10):3568-75. doi: 10.1128/JCM.00919-11. Epub 2011 Aug 17.

16.

Towards the molecular epidemiology of Mycobacterium leprae: strategies, successes, and shortcomings.

Salipante SJ, Hall BG.

Infect Genet Evol. 2011 Oct;11(7):1505-13. doi: 10.1016/j.meegid.2011.06.003. Epub 2011 Jun 25. Review.

PMID:
21708290
17.

Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model.

Boissy R, Ahmed A, Janto B, Earl J, Hall BG, Hogg JS, Pusch GD, Hiller LN, Powell E, Hayes J, Yu S, Kathju S, Stoodley P, Post JC, Ehrlich GD, Hu FZ.

BMC Genomics. 2011 Apr 13;12:187. doi: 10.1186/1471-2164-12-187.

18.

A Mycobacterium leprae VNTR database.

Hall BG.

Lepr Rev. 2010 Jun;81(2):96-8. No abstract available.

PMID:
20825113
19.

Molecular epidemiology of Mycobacterium leprae as determined by structure-neighbor clustering.

Hall BG, Salipante SJ.

J Clin Microbiol. 2010 Jun;48(6):1997-2008. doi: 10.1128/JCM.00149-10. Epub 2010 Mar 29.

20.

Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing.

Hall BG, Ehrlich GD, Hu FZ.

Microbiology. 2010 Apr;156(Pt 4):1060-8. doi: 10.1099/mic.0.035188-0. Epub 2009 Dec 17.

21.

Molecular epidemiology of Mycobacterium leprae: a solid beginning.

Hall BG.

Lepr Rev. 2009 Sep;80(3):246-9. No abstract available.

PMID:
19961098
22.

Evolution and biochemistry of family 4 glycosidases: implications for assigning enzyme function in sequence annotations.

Hall BG, Pikis A, Thompson J.

Mol Biol Evol. 2009 Nov;26(11):2487-97. doi: 10.1093/molbev/msp162. Epub 2009 Jul 22.

23.

How well does the HoT score reflect sequence alignment accuracy?

Hall BG.

Mol Biol Evol. 2008 Aug;25(8):1576-80. doi: 10.1093/molbev/msn103. Epub 2008 May 4.

PMID:
18458029
24.

Simulating DNA coding sequence evolution with EvolveAGene 3.

Hall BG.

Mol Biol Evol. 2008 Apr;25(4):688-95. doi: 10.1093/molbev/msn008. Epub 2008 Jan 12.

PMID:
18192698
25.

Retraction: Measures of clade confidence do not correlate with accuracy of phylogenetic trees.

Hall BG, Salipante SJ.

PLoS Comput Biol. 2007 Jul;3(7):e158. No abstract available.

26.
27.

Initiation of farm safety programs in the Arkansas Delta: a case study of participatory methods.

Richter JS, Hall BG, Deere GD.

J Rural Health. 2007 Winter;23(1):89-91.

PMID:
17300484
28.

Simple and accurate estimation of ancestral protein sequences.

Hall BG.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5431-6. Epub 2006 Mar 27.

29.

Phylogenetic analysis as a tool in molecular epidemiology of infectious diseases.

Hall BG, Barlow M.

Ann Epidemiol. 2006 Mar;16(3):157-69. Epub 2005 Aug 15.

PMID:
16099674
30.

Structure-based phylogeny of the metallo-beta-lactamases.

Garau G, Di Guilmi AM, Hall BG.

Antimicrob Agents Chemother. 2005 Jul;49(7):2778-84.

31.

Revised Ambler classification of {beta}-lactamases.

Hall BG, Barlow M.

J Antimicrob Chemother. 2005 Jun;55(6):1050-1. Epub 2005 May 4. No abstract available.

PMID:
15872044
32.

Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

Hall BG.

Mol Biol Evol. 2005 Mar;22(3):792-802. Epub 2004 Dec 8. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1160.

PMID:
15590907
33.

Independent origins of subgroup Bl + B2 and subgroup B3 metallo-beta-lactamases.

Hall BG, Salipante SJ, Barlow M.

J Mol Evol. 2004 Jul;59(1):133-41.

PMID:
15383916
34.

Evolution of the serine beta-lactamases: past, present and future.

Hall BG, Barlow M.

Drug Resist Updat. 2004 Apr;7(2):111-23.

PMID:
15158767
35.

Predicting the evolution of antibiotic resistance genes.

Hall BG.

Nat Rev Microbiol. 2004 May;2(5):430-5. Review. No abstract available.

PMID:
15100696
37.

GeneHunter, a transposon tool for identification and isolation of cryptic antibiotic resistance genes.

Salipante SJ, Barlow M, Hall BG.

Antimicrob Agents Chemother. 2003 Dec;47(12):3840-5.

38.

Structure-based phylogenies of the serine beta-lactamases.

Hall BG, Barlow M.

J Mol Evol. 2003 Sep;57(3):255-60.

PMID:
14629035
39.

The metallo-beta-lactamases fall into two distinct phylogenetic groups.

Hall BG, Salipante SJ, Barlow M.

J Mol Evol. 2003 Sep;57(3):249-54.

PMID:
14629034
40.
41.
42.
43.

Determining the limits of the evolutionary potential of an antibiotic resistance gene.

Salipante SJ, Hall BG.

Mol Biol Evol. 2003 Apr;20(4):653-9. Epub 2003 Apr 2.

PMID:
12679553
44.
45.
46.

Origin and evolution of the AmpC beta-lactamases of Citrobacter freundii.

Barlow M, Hall BG.

Antimicrob Agents Chemother. 2002 May;46(5):1190-8.

47.

Predicting evolutionary potential: in vitro evolution accurately reproduces natural evolution of the tem beta-lactamase.

Barlow M, Hall BG.

Genetics. 2002 Mar;160(3):823-32. Erratum in: Genetics. 2002 Jul;161(3):1355..

48.
49.
50.

Transposable elements as activators of cryptic genes in E. coli.

Hall BG.

Genetica. 1999;107(1-3):181-7.

PMID:
10952211

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