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Tbx3-Mediated Regulation of Cardiac Conduction System Development and Function: Potential Contributions of Alternative RNA Processing.

Delisle BP, Yu Y, Puvvula P, Hall AR, Huff C, Moon AM.

Pediatr Cardiol. 2019 Oct;40(7):1388-1400. doi: 10.1007/s00246-019-02166-4. Epub 2019 Aug 1.


Impact of bile salts on coevolutionary dynamics between the gut bacterium Escherichia coli and its lytic phage PP01.

Scanlan JG, Hall AR, Scanlan PD.

Infect Genet Evol. 2019 Sep;73:425-432. doi: 10.1016/j.meegid.2019.05.021. Epub 2019 May 30.


Simple and Efficient Room-Temperature Release of Biotinylated Nucleic Acids from Streptavidin and Its Application to Selective Molecular Detection.

Bearden S, Wang F, Hall AR.

Anal Chem. 2019 Jul 2;91(13):7996-8001. doi: 10.1021/acs.analchem.9b01873. Epub 2019 Jun 12.


Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis.

Payne JL, Menardo F, Trauner A, Borrell S, Gygli SM, Loiseau C, Gagneux S, Hall AR.

PLoS Biol. 2019 May 13;17(5):e3000265. doi: 10.1371/journal.pbio.3000265. eCollection 2019 May.


Correction: Control of mitochondrial superoxide production by reverse electron transport at complex I.

Robb EL, Hall AR, Prime TA, Eaton S, Szibor M, Viscomi C, James AM, Murphy MP.

J Biol Chem. 2019 May 10;294(19):7966. doi: 10.1074/jbc.AAC119.008929. No abstract available.


Estimation of Shape, Volume, and Dipole Moment of Individual Proteins Freely Transiting a Synthetic Nanopore.

Houghtaling J, Ying C, Eggenberger OM, Fennouri A, Nandivada S, Acharjee M, Li J, Hall AR, Mayer M.

ACS Nano. 2019 May 28;13(5):5231-5242. doi: 10.1021/acsnano.8b09555. Epub 2019 Apr 24.


Coevolutionary dynamics shape the structure of bacteria-phage infection networks.

Fortuna MA, Barbour MA, Zaman L, Hall AR, Buckling A, Bascompte J.

Evolution. 2019 May;73(5):1001-1011. doi: 10.1111/evo.13731. Epub 2019 Apr 17.


Wafer-scale fabrication of fused silica chips for low-noise recording of resistive pulses through nanopores.

de Vreede LJ, Ying C, Houghtaling J, Figueiredo Da Silva J, Hall AR, Lovera A, Mayer M.

Nanotechnology. 2019 Jun 28;30(26):265301. doi: 10.1088/1361-6528/ab0e2a. Epub 2019 Mar 8.


Selective mitochondrial superoxide generation in vivo is cardioprotective through hormesis.

Antonucci S, Mulvey JF, Burger N, Di Sante M, Hall AR, Hinchy EC, Caldwell ST, Gruszczyk AV, Deshwal S, Hartley RC, Kaludercic N, Murphy MP, Di Lisa F, Krieg T.

Free Radic Biol Med. 2019 Apr;134:678-687. doi: 10.1016/j.freeradbiomed.2019.01.034. Epub 2019 Feb 4.


Selective Disruption of Mitochondrial Thiol Redox State in Cells and In Vivo.

Booty LM, Gawel JM, Cvetko F, Caldwell ST, Hall AR, Mulvey JF, James AM, Hinchy EC, Prime TA, Arndt S, Beninca C, Bright TP, Clatworthy MR, Ferdinand JR, Prag HA, Logan A, Prudent J, Krieg T, Hartley RC, Murphy MP.

Cell Chem Biol. 2019 Mar 21;26(3):449-461.e8. doi: 10.1016/j.chembiol.2018.12.002. Epub 2019 Jan 31.


Resistance Gene Carriage Predicts Growth of Natural and Clinical Escherichia coli Isolates in the Absence of Antibiotics.

Allen RC, Angst DC, Hall AR.

Appl Environ Microbiol. 2019 Feb 6;85(4). pii: e02111-18. doi: 10.1128/AEM.02111-18. Print 2019 Feb 15.


Mitochondria-derived ROS activate AMP-activated protein kinase (AMPK) indirectly.

Hinchy EC, Gruszczyk AV, Willows R, Navaratnam N, Hall AR, Bates G, Bright TP, Krieg T, Carling D, Murphy MP.

J Biol Chem. 2018 Nov 2;293(44):17208-17217. doi: 10.1074/jbc.RA118.002579. Epub 2018 Sep 19.


Visualizing Mutation-Specific Differences in the Trafficking-Deficient Phenotype of Kv11.1 Proteins Linked to Long QT Syndrome Type 2.

Hall AR, Anderson CL, Smith JL, Mirshahi T, Elayi CS, January CT, Delisle BP.

Front Physiol. 2018 May 23;9:584. doi: 10.3389/fphys.2018.00584. eCollection 2018.


Aluminum Exposure from Parenteral Nutrition: Early Bile Canaliculus Changes of the Hepatocyte.

Hall AR, Le H, Arnold C, Brunton J, Bertolo R, Miller GG, Zello GA, Sergi C.

Nutrients. 2018 Jun 4;10(6). pii: E723. doi: 10.3390/nu10060723.


Functional Invalidation of Putative Sudden Infant Death Syndrome-Associated Variants in the KCNH2-Encoded Kv11.1 Channel.

Smith JL, Tester DJ, Hall AR, Burgess DE, Hsu CC, Elayi SC, Anderson CL, January CT, Luo JZ, Hartzel DN, Mirshahi UL, Murray MF, Mirshahi T, Ackerman MJ, Delisle BP.

Circ Arrhythm Electrophysiol. 2018 May;11(5):e005859. doi: 10.1161/CIRCEP.117.005859.


Control of mitochondrial superoxide production by reverse electron transport at complex I.

Robb EL, Hall AR, Prime TA, Eaton S, Szibor M, Viscomi C, James AM, Murphy MP.

J Biol Chem. 2018 Jun 22;293(25):9869-9879. doi: 10.1074/jbc.RA118.003647. Epub 2018 May 9. Erratum in: J Biol Chem. 2019 May 10;294(19):7966.


CD36 palmitoylation disrupts free fatty acid metabolism and promotes tissue inflammation in non-alcoholic steatohepatitis.

Zhao L, Zhang C, Luo X, Wang P, Zhou W, Zhong S, Xie Y, Jiang Y, Yang P, Tang R, Pan Q, Hall AR, Luong TV, Fan J, Varghese Z, Moorhead JF, Pinzani M, Chen Y, Ruan XZ.

J Hepatol. 2018 Sep;69(3):705-717. doi: 10.1016/j.jhep.2018.04.006. Epub 2018 Apr 27.


Label-free analysis of physiological hyaluronan size distribution with a solid-state nanopore sensor.

Rivas F, Zahid OK, Reesink HL, Peal BT, Nixon AJ, DeAngelis PL, Skardal A, Rahbar E, Hall AR.

Nat Commun. 2018 Mar 12;9(1):1037. doi: 10.1038/s41467-018-03439-x.


In vitro patient-derived 3D mesothelioma tumor organoids facilitate patient-centric therapeutic screening.

Mazzocchi AR, Rajan SAP, Votanopoulos KI, Hall AR, Skardal A.

Sci Rep. 2018 Feb 13;8(1):2886. doi: 10.1038/s41598-018-21200-8.


Polymers and biopolymers at interfaces.

Hall AR, Geoghegan M.

Rep Prog Phys. 2018 Mar;81(3):036601. doi: 10.1088/1361-6633/aa9e9c.


Effects of prior exposure to antibiotics on bacterial adaptation to phages.

Arias-Sánchez FI, Allen RC, Hall AR.

J Evol Biol. 2018 Feb;31(2):277-286. doi: 10.1111/jeb.13220. Epub 2018 Jan 2.


Associations among Antibiotic and Phage Resistance Phenotypes in Natural and Clinical Escherichia coli Isolates.

Allen RC, Pfrunder-Cardozo KR, Meinel D, Egli A, Hall AR.

MBio. 2017 Oct 31;8(5). pii: e01341-17. doi: 10.1128/mBio.01341-17.


Solid-State Nanopore Analysis of Diverse DNA Base Modifications Using a Modular Enzymatic Labeling Process.

Wang F, Zahid OK, Swain BE, Parsonage D, Hollis T, Harvey S, Perrino FW, Kohli RM, Taylor EW, Hall AR.

Nano Lett. 2017 Nov 8;17(11):7110-7116. doi: 10.1021/acs.nanolett.7b03911. Epub 2017 Oct 5.


Reversing resistance: different routes and common themes across pathogens.

Allen RC, Engelstädter J, Bonhoeffer S, McDonald BA, Hall AR.

Proc Biol Sci. 2017 Sep 27;284(1863). pii: 20171619. doi: 10.1098/rspb.2017.1619. Review.


Assessing the effects of mitofusin 2 deficiency in the adult heart using 3D electron tomography.

Beikoghli Kalkhoran S, Hall AR, White IJ, Cooper J, Fan Q, Ong SB, Hernández-Reséndiz S, Cabrera-Fuentes H, Chinda K, Chakraborty B, Dorn GW 2nd, Yellon DM, Hausenloy DJ.

Physiol Rep. 2017 Sep;5(17). pii: e13437. doi: 10.14814/phy2.13437.


MitoNeoD: A Mitochondria-Targeted Superoxide Probe.

Shchepinova MM, Cairns AG, Prime TA, Logan A, James AM, Hall AR, Vidoni S, Arndt S, Caldwell ST, Prag HA, Pell VR, Krieg T, Mulvey JF, Yadav P, Cobley JN, Bright TP, Senn HM, Anderson RF, Murphy MP, Hartley RC.

Cell Chem Biol. 2017 Oct 19;24(10):1285-1298.e12. doi: 10.1016/j.chembiol.2017.08.003. Epub 2017 Sep 7.


Multi-tissue interactions in an integrated three-tissue organ-on-a-chip platform.

Skardal A, Murphy SV, Devarasetty M, Mead I, Kang HW, Seol YJ, Shrike Zhang Y, Shin SR, Zhao L, Aleman J, Hall AR, Shupe TD, Kleensang A, Dokmeci MR, Jin Lee S, Jackson JD, Yoo JJ, Hartung T, Khademhosseini A, Soker S, Bishop CE, Atala A.

Sci Rep. 2017 Aug 18;7(1):8837. doi: 10.1038/s41598-017-08879-x.


High-resolution studies of hydride transfer in the ferredoxin:NADP+ reductase superfamily.

Kean KM, Carpenter RA, Pandini V, Zanetti G, Hall AR, Faber R, Aliverti A, Karplus PA.

FEBS J. 2017 Oct;284(19):3302-3319. doi: 10.1111/febs.14190. Epub 2017 Aug 29.


Unique morphological characteristics of mitochondrial subtypes in the heart: the effect of ischemia and ischemic preconditioning.

Kalkhoran SB, Munro P, Qiao F, Ong SB, Hall AR, Cabrera-Fuentes H, Chakraborty B, Boisvert WA, Yellon DM, Hausenloy DJ.

Discoveries (Craiova). 2017 Jan-Mar;5(1). pii: e71. doi: 10.15190/d.2017.1.


Solid-state nanopore analysis of alcohol-soluble molecules.

Roy DB, Hall AR.

Analyst. 2017 May 15;142(10):1676-1681. doi: 10.1039/c7an00022g.


Genetic and environmental integration of the hawkmoth pollination syndrome in Ruellia humilis (Acanthaceae).

Heywood JS, Michalski JS, McCann BK, Russo AD, Andres KJ, Hall AR, Middleton TC.

Ann Bot. 2017 May 1;119(7):1143-1155. doi: 10.1093/aob/mcx003.


Non-enzymatic N-acetylation of Lysine Residues by AcetylCoA Often Occurs via a Proximal S-acetylated Thiol Intermediate Sensitive to Glyoxalase II.

James AM, Hoogewijs K, Logan A, Hall AR, Ding S, Fearnley IM, Murphy MP.

Cell Rep. 2017 Feb 28;18(9):2105-2112. doi: 10.1016/j.celrep.2017.02.018.


Correction to 'Effects of antibiotic resistance alleles on bacterial evolutionary responses to viral parasites'.

Arias-Sánchez FI, Hall AR.

Biol Lett. 2016 Oct;12(10). pii: 20160759. doi: 10.1098/rsbl.2016.0759. No abstract available.


Solid-state nanopore localization by controlled breakdown of selectively thinned membranes.

Carlsen AT, Briggs K, Hall AR, Tabard-Cossa V.

Nanotechnology. 2017 Feb 24;28(8):085304-85304. doi: 10.1088/1361-6528/aa564d. Epub 2017 Jan 3.


Real-time shape approximation and fingerprinting of single proteins using a nanopore.

Yusko EC, Bruhn BR, Eggenberger OM, Houghtaling J, Rollings RC, Walsh NC, Nandivada S, Pindrus M, Hall AR, Sept D, Li J, Kalonia DS, Mayer M.

Nat Nanotechnol. 2017 May;12(4):360-367. doi: 10.1038/nnano.2016.267. Epub 2016 Dec 19.


Modification of Escherichia coli-bacteriophage interactions by surfactants and antibiotics in vitro.

Scanlan PD, Bischofberger AM, Hall AR.

FEMS Microbiol Ecol. 2017 Jan;93(1). pii: fiw211. Epub 2016 Oct 12.


Parasite genetic distance and local adaptation in co-evolving bacteria-bacteriophage populations.

Scanlan PD, Hall AR, Buckling A.

Mol Ecol. 2017 Apr;26(7):1747-1755. doi: 10.1111/mec.13897. Epub 2016 Nov 24.


Quantifying mammalian genomic DNA hydroxymethylcytosine content using solid-state nanopores.

Zahid OK, Zhao BS, He C, Hall AR.

Sci Rep. 2016 Jul 7;6:29565. doi: 10.1038/srep29565.


Hearts deficient in both Mfn1 and Mfn2 are protected against acute myocardial infarction.

Hall AR, Burke N, Dongworth RK, Kalkhoran SB, Dyson A, Vicencio JM, Dorn GW II, Yellon DM, Hausenloy DJ.

Cell Death Dis. 2016 May 26;7:e2238. doi: 10.1038/cddis.2016.139.


Effects of antibiotic resistance alleles on bacterial evolutionary responses to viral parasites.

Arias-Sánchez FI, Hall AR.

Biol Lett. 2016 May;12(5). pii: 20160064. doi: 10.1098/rsbl.2016.0064. Erratum in: Biol Lett. 2016 Oct;12 (10 ):null.


Epistasis buffers the fitness effects of rifampicin-resistance mutations in Pseudomonas aeruginosa.

Hall AR, MacLean RC.

Evolution. 2016 May;70(5):1161. doi: 10.1111/evo.12918. Epub 2016 Apr 22. No abstract available.


Infant Parenteral Nutrition Remains a Significant Source for Aluminum Toxicity.

Hall AR, Arnold CJ, Miller GG, Zello GA.

JPEN J Parenter Enteral Nutr. 2017 Sep;41(7):1228-1233. doi: 10.1177/0148607116638056. Epub 2016 Mar 16.


Sequence-Specific Recognition of MicroRNAs and Other Short Nucleic Acids with Solid-State Nanopores.

Zahid OK, Wang F, Ruzicka JA, Taylor EW, Hall AR.

Nano Lett. 2016 Mar 9;16(3):2033-9. doi: 10.1021/acs.nanolett.6b00001. Epub 2016 Feb 2.


Amyloid persistence in decellularized liver: biochemical and histopathological characterization.

Mazza G, Simons JP, Al-Shawi R, Ellmerich S, Urbani L, Giorgetti S, Taylor GW, Gilbertson JA, Hall AR, Al-Akkad W, Dhar D, Hawkins PN, De Coppi P, Pinzani M, Bellotti V, Mangione PP.

Amyloid. 2016;23(1):1-7. doi: 10.3109/13506129.2015.1110518. Epub 2015 Dec 8.


Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria.

Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR.

Mol Biol Evol. 2016 Mar;33(3):770-82. doi: 10.1093/molbev/msv270. Epub 2015 Nov 24.


Dexmedetomidine protects the heart against ischemia-reperfusion injury by an endothelial eNOS/NO dependent mechanism.

Riquelme JA, Westermeier F, Hall AR, Vicencio JM, Pedrozo Z, Ibacache M, Fuenzalida B, Sobrevia L, Davidson SM, Yellon DM, Sánchez G, Lavandero S.

Pharmacol Res. 2016 Jan;103:318-27. doi: 10.1016/j.phrs.2015.11.004. Epub 2015 Dec 1.


Experimental evolution and bacterial resistance: (co)evolutionary costs and trade-offs as opportunities in phage therapy research.

Scanlan PD, Buckling A, Hall AR.

Bacteriophage. 2015 May 21;5(2):e1050153. eCollection 2015 Apr-Jun.


In situ patterned micro 3D liver constructs for parallel toxicology testing in a fluidic device.

Skardal A, Devarasetty M, Soker S, Hall AR.

Biofabrication. 2015 Sep 10;7(3):031001. doi: 10.1088/1758-5090/7/3/031001.


Characterization of the Langendorff Perfused Isolated Mouse Heart Model of Global Ischemia-Reperfusion Injury: Impact of Ischemia and Reperfusion Length on Infarct Size and LDH Release.

Rossello X, Hall AR, Bell RM, Yellon DM.

J Cardiovasc Pharmacol Ther. 2016 May;21(3):286-95. doi: 10.1177/1074248415604462. Epub 2015 Sep 9.


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