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Items: 46

1.

Diversity of Extended-Spectrum Cephalosporin-Resistant Escherichia coli in Feces from Calves and Cows on Pennsylvania Dairy Farms.

Salaheen S, Cao H, Sonnier JL, Kim SW, Del Collo LP, Hovingh E, Karns JS, Haley BJ, Van Kessel JAS.

Foodborne Pathog Dis. 2019 Feb 4. doi: 10.1089/fpd.2018.2579. [Epub ahead of print]

PMID:
30715902
2.

Antimicrobial Resistance Among Escherichia coli Isolated from Veal Calf Operations in Pennsylvania.

Salaheen S, Kim SW, Cao H, Wolfgang DR, Hovingh E, Karns JS, Haley BJ, Van Kessel JAS.

Foodborne Pathog Dis. 2019 Jan;16(1):74-80. doi: 10.1089/fpd.2018.2530.

PMID:
30673353
3.

Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Fresno Isolate Recovered from a Bovine Lymph Node.

Haley BJ, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Kim SW, Van Kessel JAS, Harhay DM.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01338-18. doi: 10.1128/MRA.01338-18. eCollection 2019 Jan.

4.

Age-Associated Distribution of Antimicrobial-Resistant Salmonella enterica and Escherichia coli Isolated from Dairy Herds in Pennsylvania, 2013-2015.

Cao H, Pradhan AK, Karns JS, Hovingh E, Wolfgang DR, Vinyard BT, Kim SW, Salaheen S, Haley BJ, Van Kessel JAS.

Foodborne Pathog Dis. 2019 Jan;16(1):60-67. doi: 10.1089/fpd.2018.2519. Epub 2018 Dec 31.

PMID:
30597121
5.

Complete Closed Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Dublin Strains Isolated from Cattle at Harvest.

Harhay DM, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Haley BJ, Kim SW, Van Kessel JAS.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01334-18. doi: 10.1128/MRA.01334-18. eCollection 2018 Nov.

6.

Fecal Metagenome Sequences from Lactating Dairy Cows Shedding Escherichia coli O157:H7.

Salaheen S, Kim SW, Karns JS, Haley BJ, Van Kessel JAS.

Microbiol Resour Announc. 2018 Nov 8;7(18). pii: e01279-18. doi: 10.1128/MRA.01279-18. eCollection 2018 Nov.

7.

Antimicrobial Resistance in Fecal Escherichia coli and Salmonella enterica from Dairy Calves: A Systematic Review.

Springer HR, Denagamage TN, Fenton GD, Haley BJ, Van Kessel JAS, Hovingh EP.

Foodborne Pathog Dis. 2019 Jan;16(1):23-34. doi: 10.1089/fpd.2018.2529. Epub 2018 Nov 27.

PMID:
30481058
8.

Genetic diversity and virulence profiles of Listeria monocytogenes recovered from bulk tank milk, milk filters, and milking equipment from dairies in the United States (2002 to 2014).

Kim SW, Haendiges J, Keller EN, Myers R, Kim A, Lombard JE, Karns JS, Van Kessel JAS, Haley BJ.

PLoS One. 2018 May 9;13(5):e0197053. doi: 10.1371/journal.pone.0197053. eCollection 2018.

9.

Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.

Front Microbiol. 2017 Dec 15;8:2460. doi: 10.3389/fmicb.2017.02460. eCollection 2017.

10.

Prevalence of Salmonella enterica, Listeria monocytogenes, and pathogenic Escherichia coli in bulk tank milk and milk filters from US dairy operations in the National Animal Health Monitoring System Dairy 2014 study.

Sonnier JL, Karns JS, Lombard JE, Kopral CA, Haley BJ, Kim SW, Van Kessel JAS.

J Dairy Sci. 2018 Mar;101(3):1943-1956. doi: 10.3168/jds.2017-13546. Epub 2017 Dec 21.

PMID:
29274964
11.

Alternative Growth Promoters Modulate Broiler Gut Microbiome and Enhance Body Weight Gain.

Salaheen S, Kim SW, Haley BJ, Van Kessel JAS, Biswas D.

Front Microbiol. 2017 Oct 26;8:2088. doi: 10.3389/fmicb.2017.02088. eCollection 2017.

12.

Genome Sequences of Salmonella enterica subsp. enterica Serovar Kentucky Sequence Type 152 Isolated from Dairy Cows in the United States.

Haley BJ, Luo Y, Wang C, Brown E, Allard M, Karns JS, Van Kessel JAS.

Genome Announc. 2017 Oct 19;5(42). pii: e01119-17. doi: 10.1128/genomeA.01119-17.

13.

Genome Sequences of 30 Escherichia coli O157:H7 Isolates Recovered from a Single Dairy Farm and Its Associated Off-Site Heifer-Raising Facility.

Kim SW, Karns JS, Van Kessel JAS, Haley BJ.

Genome Announc. 2017 Aug 31;5(35). pii: e00814-17. doi: 10.1128/genomeA.00814-17.

14.

Genome Sequences of Five Multidrug-Resistant Escherichia coli Sequence Type 117 Isolates Recovered from Dairy Calves.

Kim SW, Karns JS, Van Kessel JAS, Haley BJ.

Genome Announc. 2017 Aug 17;5(33). pii: e00732-17. doi: 10.1128/genomeA.00732-17.

15.

Genome Sequences of Four Nonhuman/Nonclinical Salmonella enterica Serovar Kentucky ST198 Isolates Recovered between 1972 and 1973.

Kim SW, Haley BJ, Roberson D, Allard M, Hammack TS, Brown EW, Van Kessel JA.

Genome Announc. 2017 Mar 16;5(11). pii: e01699-16. doi: 10.1128/genomeA.01699-16.

16.

Prevalence, antimicrobial resistance, and molecular characterization of Campylobacter spp. in bulk tank milk and milk filters from US dairies.

Del Collo LP, Karns JS, Biswas D, Lombard JE, Haley BJ, Kristensen RC, Kopral CA, Fossler CP, Van Kessel JAS.

J Dairy Sci. 2017 May;100(5):3470-3479. doi: 10.3168/jds.2016-12084. Epub 2017 Feb 23.

17.

Genome Sequences of Two Salmonella enterica Serovar Kentucky Isolates Recovered from Poultry Carcasses in the United States.

Haley BJ, Kim SW, Liljebjelke K, Guard J, Van Kessel JA.

Genome Announc. 2016 Nov 17;4(6). pii: e01289-16. doi: 10.1128/genomeA.01289-16.

18.

Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America.

Haley BJ, Kim SW, Pettengill J, Luo Y, Karns JS, Van Kessel JA.

PLoS One. 2016 Oct 3;11(10):e0161225. doi: 10.1371/journal.pone.0161225. eCollection 2016.

19.

Genome Sequence of a Novel Multiple-Antibiotic-Resistant Member of the Erysipelotrichaceae Family Isolated from a Swine Manure Storage Pit.

Haley BJ, Kim SW, Whitehead TR.

Genome Announc. 2016 Sep 22;4(5). pii: e00978-16. doi: 10.1128/genomeA.00978-16.

20.

Genome Sequences of Ralstonia insidiosa Type Strain ATCC 49129 and Strain FC1138, a Strong Biofilm Producer Isolated from a Fresh-Cut Produce-Processing Plant.

Xu Y, Nagy A, Yan X, Haley BJ, Kim SW, Liu NT, Nou X.

Genome Announc. 2016 Aug 18;4(4). pii: e00847-16. doi: 10.1128/genomeA.00847-16.

21.

Comparison of Microbial Communities Isolated from Feces of Asymptomatic Salmonella-Shedding and Non-Salmonella Shedding Dairy Cows.

Haley BJ, Pettengill J, Gorham S, Ottesen A, Karns JS, Van Kessel JA.

Front Microbiol. 2016 Jun 1;7:691. doi: 10.3389/fmicb.2016.00691. eCollection 2016.

22.

Complete Genome Sequence and Methylome of Salmonella enterica subsp. enterica Cerro, a Frequent Dairy Cow Serovar.

Haley BJ, Pirone C, Muruvanda T, Brown E, Allard M, Karns JS, Van Kessel JA.

Genome Announc. 2016 Jan 28;4(1). pii: e01350-15. doi: 10.1128/genomeA.01350-15.

23.

Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia.

Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N, Huq A, Colwell RR, Tediashvili M.

Front Public Health. 2015 Oct 13;3:232. doi: 10.3389/fpubh.2015.00232. eCollection 2015.

24.

Diversity of Listeria monocytogenes within a U.S. dairy herd, 2004-2010.

Haley BJ, Sonnier J, Schukken YH, Karns JS, Van Kessel JA.

Foodborne Pathog Dis. 2015 Oct;12(10):844-50. doi: 10.1089/fpd.2014.1886. Epub 2015 Sep 1.

PMID:
26325149
25.

Improvements to a PCR-Based Serogrouping Scheme for Salmonella enterica from Dairy Farm Samples.

Karns JS, Haley BJ, Van Kessel JA.

J Food Prot. 2015 Jun;78(6):1182-5. doi: 10.4315/0362-028X.JFP-14-475.

PMID:
26038910
26.

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2813-9. doi: 10.1073/pnas.1503928112. Epub 2015 May 11.

27.

Molecular detection of the index case of a subclinical Salmonella Kentucky epidemic on a dairy farm.

Haley BJ, Allard M, Brown E, Hovingh E, Karns JS, van Kessel JS.

Epidemiol Infect. 2015 Mar;143(4):682-6. doi: 10.1017/S0950268814001289.

PMID:
25703396
28.

Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.

Kahler AM, Haley BJ, Chen A, Mull BJ, Tarr CL, Turnsek M, Katz LS, Humphrys MS, Derado G, Freeman N, Boncy J, Colwell RR, Huq A, Hill VR.

Am J Trop Med Hyg. 2015 Jan;92(1):118-25. doi: 10.4269/ajtmh.13-0601. Epub 2014 Nov 10.

29.

Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens.

Kirchberger PC, Turnsek M, Hunt DE, Haley BJ, Colwell RR, Polz MF, Tarr CL, Boucher Y.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3208-14. doi: 10.1099/ijs.0.060145-0. Epub 2014 Jun 27.

PMID:
24972615
30.

Genome Sequences of Eight Salmonella enterica subsp. enterica Serovars Isolated from a Single Dairy Farm.

Haley BJ, Luo Y, Wang C, Pettengill J, Allard M, Brown E, Karns JS, Van Kessel JA.

Genome Announc. 2014 Apr 24;2(2). pii: e00082-14. doi: 10.1128/genomeA.00082-14.

31.

Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak.

Haley BJ, Choi SY, Grim CJ, Onifade TJ, Cinar HN, Tall BD, Taviani E, Hasan NA, Abdullah AH, Carter L, Sahu SN, Kothary MH, Chen A, Baker R, Hutchinson R, Blackmore C, Cebula TA, Huq A, Colwell RR.

PLoS One. 2014 Apr 3;9(4):e86264. doi: 10.1371/journal.pone.0086264. eCollection 2014.

32.

Molecular diversity and predictability of Vibrio parahaemolyticus along the Georgian coastal zone of the Black Sea.

Haley BJ, Kokashvili T, Tskshvediani A, Janelidze N, Mitaishvili N, Grim CJ, Constantin de Magny G, Chen AJ, Taviani E, Eliashvili T, Tediashvili M, Whitehouse CA, Colwell RR, Huq A.

Front Microbiol. 2014 Feb 10;5:45. doi: 10.3389/fmicb.2014.00045. eCollection 2014.

33.

Genome Sequences of Clinical Vibrio cholerae Isolates from an Oyster-Borne Cholera Outbreak in Florida.

Haley BJ, Choi SY, Hasan NA, Abdullah AS, Cebula TA, Huq A, Colwell RR.

Genome Announc. 2013 Nov 21;1(6). pii: e00966-13. doi: 10.1128/genomeA.00966-13.

34.

Detection of Vibrio cholerae in environmental waters including drinking water reservoirs of Azerbaijan.

Rashid A, Haley BJ, Rajabov M, Ahmadova S, Gurbanov S, Colwell RR, Huq A.

Environ Microbiol Rep. 2013 Feb;5(1):30-8. doi: 10.1111/j.1758-2229.2012.00369.x. Epub 2012 Aug 13.

PMID:
23757128
35.

Vibrio cholerae in an Historically Cholera-Free Country.

Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA, Huq A, Colwell RR, Benediktsd├│ttir E.

Environ Microbiol Rep. 2012 Aug 1;4(4):381-389. Epub 2012 Mar 12.

36.

Detection, isolation, and identification of Vibrio cholerae from the environment.

Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.

Curr Protoc Microbiol. 2012 Aug;Chapter 6:Unit6A.5. doi: 10.1002/9780471729259.mc06a05s26.

37.

Genomic diversity of 2010 Haitian cholera outbreak strains.

Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, Haley BJ, Taviani E, Hine E, Su Q, Tallon LJ, Prosper JB, Furth K, Hoq MM, Li H, Fraser-Liggett CM, Cravioto A, Huq A, Ravel J, Cebula TA, Colwell RR.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):E2010-7. doi: 10.1073/pnas.1207359109. Epub 2012 Jun 18.

38.

Genomic analysis of ICEVchBan8: An atypical genetic element in Vibrio cholerae.

Taviani E, Spagnoletti M, Ceccarelli D, Haley BJ, Hasan NA, Chen A, Colombo MM, Huq A, Colwell RR.

FEBS Lett. 2012 Jun 4;586(11):1617-21. doi: 10.1016/j.febslet.2012.03.064. Epub 2012 Apr 18.

39.

Occurrence of Vibrio cholerae in municipal and natural waters and incidence of cholera in Azerbaijan.

Gurbanov S, Akhmadov R, Shamkhalova G, Akhmadova S, Haley BJ, Colwell RR, Huq A.

Ecohealth. 2011 Dec;8(4):468-77. doi: 10.1007/s10393-012-0756-8. Epub 2012 Mar 27.

PMID:
22451165
40.

An additional step in the transmission of Yersinia pestis?

Easterday WR, Kausrud KL, Star B, Heier L, Haley BJ, Ageyev V, Colwell RR, Stenseth NC.

ISME J. 2012 Feb;6(2):231-6. doi: 10.1038/ismej.2011.105. Epub 2011 Aug 11. Review.

41.

Comparative genomics of clinical and environmental Vibrio mimicus.

Hasan NA, Grim CJ, Haley BJ, Chun J, Alam M, Taviani E, Hoq M, Munk AC, Saunders E, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Xie G, Nair GB, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21134-9. doi: 10.1073/pnas.1013825107. Epub 2010 Nov 15.

42.

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae.

Haley BJ, Grim CJ, Hasan NA, Choi SY, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Huq A, Colwell RR.

BMC Microbiol. 2010 May 27;10:154. doi: 10.1186/1471-2180-10-154.

43.

The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir.

Haley BJ, Grim CJ, Hasan NA, Taviani E, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Huq A, Nair GB, Colwell RR.

Environ Microbiol Rep. 2010 Feb;2(1):208-16. doi: 10.1111/j.1758-2229.2010.00141.x.

PMID:
23766018
44.

Serodiversity and ecological distribution of Vibrio parahaemolyticus in the Venetian Lagoon, Northeast Italy.

Caburlotto G, Haley BJ, Lle├▓ MM, Huq A, Colwell RR.

Environ Microbiol Rep. 2010 Feb;2(1):151-7. doi: 10.1111/j.1758-2229.2009.00123.x. Epub 2010 Jan 5.

PMID:
23766011
45.

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae.

Chun J, Grim CJ, Hasan NA, Lee JH, Choi SY, Haley BJ, Taviani E, Jeon YS, Kim DW, Lee JH, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Munk AC, Chertkov O, Meincke L, Saunders E, Walters RA, Huq A, Nair GB, Colwell RR.

Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15442-7. doi: 10.1073/pnas.0907787106. Epub 2009 Aug 31.

46.

Distribution, diversity, and seasonality of waterborne salmonellae in a rural watershed.

Haley BJ, Cole DJ, Lipp EK.

Appl Environ Microbiol. 2009 Mar;75(5):1248-55. doi: 10.1128/AEM.01648-08. Epub 2009 Jan 5.

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