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Items: 18

1.

Draft Genome Assembly of the Sheep Scab Mite, Psoroptes ovis.

Burgess STG, Bartley K, Marr EJ, Wright HW, Weaver RJ, Prickett JC, Hughes M, Haldenby S, Thi Le P, Rombauts S, Van Leeuwen T, Van de Peer Y, Nisbet AJ.

Genome Announc. 2018 Apr 19;6(16). pii: e00265-18. doi: 10.1128/genomeA.00265-18.

2.

Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strain.

Williams D, Fothergill JL, Evans B, Caples J, Haldenby S, Walshaw MJ, Brockhurst MA, Winstanley C, Paterson S.

Microb Genom. 2018 Mar 16. doi: 10.1099/mgen.0.000167. [Epub ahead of print]

3.

Genomics of habitat choice and adaptive evolution in a deep-sea fish.

Gaither MR, Gkafas GA, de Jong M, Sarigol F, Neat F, Regnier T, Moore D, Grӧcke DR, Hall N, Liu X, Kenny J, Lucaci A, Hughes M, Haldenby S, Hoelzel AR.

Nat Ecol Evol. 2018 Apr;2(4):680-687. doi: 10.1038/s41559-018-0482-x. Epub 2018 Mar 5.

PMID:
29507380
4.

Identification of Equid herpesvirus 2 in tissue-engineered equine tendon.

Wardle R, Pullman JA, Haldenby S, Ressel L, Pope M, Clegg PD, Radford A, Stewart JP, Al-Saadi M, Dyer P, Peffers MJ.

Wellcome Open Res. 2017 Oct 17;2:60. doi: 10.12688/wellcomeopenres.12176.2. eCollection 2017.

5.

Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut.

Carroll MW, Haldenby S, Rickett NY, Pályi B, Garcia-Dorival I, Liu X, Barker G, Bore JA, Koundouno FR, Williamson ED, Laws TR, Kerber R, Sissoko D, Magyar N, Di Caro A, Biava M, Fletcher TE, Sprecher A, Ng LFP, Rénia L, Magassouba N, Günther S, Wölfel R, Stoecker K, Matthews DA, Hiscox JA.

mSphere. 2017 Aug 23;2(4). pii: e00325-17. doi: 10.1128/mSphereDirect.00325-17. eCollection 2017 Jul-Aug.

6.

Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity.

Ransom-Jones E, McCarthy AJ, Haldenby S, Doonan J, McDonald JE.

mSphere. 2017 Aug 2;2(4). pii: e00300-17. doi: 10.1128/mSphere.00300-17. eCollection 2017 Jul-Aug.

7.

SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms.

D'Amore R, Johnson J, Haldenby S, Hall N, Hughes M, Joynson R, Kenny JG, Patron N, Hertz-Fowler C, Hall A.

Biotechniques. 2017 Jul 1;63(1):13-20. doi: 10.2144/000114565.

8.

RadB acts in homologous recombination in the archaeon Haloferax volcanii, consistent with a role as recombination mediator.

Wardell K, Haldenby S, Jones N, Liddell S, Ngo GHP, Allers T.

DNA Repair (Amst). 2017 Jul;55:7-16. doi: 10.1016/j.dnarep.2017.04.005. Epub 2017 Apr 26.

9.

Novel Sampling Method for Assessing Human-Pathogen Interactions in the Natural Environment Using Boot Socks and Citizen Scientists, with Application to Campylobacter Seasonality.

Jones NR, Millman C, van der Es M, Hukelova M, Forbes KJ, Glover C, Haldenby S, Hunter PR, Jackson K, O'Brien SJ, Rigby D, Strachan NJC, Williams N, Lake IR; ENIGMA Consortium.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00162-17. doi: 10.1128/AEM.00162-17. Print 2017 Jul 15.

10.

Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus.

Liu X, Speranza E, Muñoz-Fontela C, Haldenby S, Rickett NY, Garcia-Dorival I, Fang Y, Hall Y, Zekeng EG, Lüdtke A, Xia D, Kerber R, Krumkamp R, Duraffour S, Sissoko D, Kenny J, Rockliffe N, Williamson ED, Laws TR, N'Faly M, Matthews DA, Günther S, Cossins AR, Sprecher A, Connor JH, Carroll MW, Hiscox JA.

Genome Biol. 2017 Jan 19;18(1):4. doi: 10.1186/s13059-016-1137-3.

11.

Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.

Carr DF, Bourgeois S, Chaponda M, Takeshita LY, Morris AP, Castro EM, Alfirevic A, Jones AR, Rigden DJ, Haldenby S, Khoo S, Lalloo DG, Heyderman RS, Dandara C, Kampira E, van Oosterhout JJ, Ssali F, Munderi P, Novelli G, Borgiani P, Nelson MR, Holden A, Deloukas P, Pirmohamed M.

J Antimicrob Chemother. 2017 Apr 1;72(4):1152-1162. doi: 10.1093/jac/dkw545.

12.

Temperate phages both mediate and drive adaptive evolution in pathogen biofilms.

Davies EV, James CE, Williams D, O'Brien S, Fothergill JL, Haldenby S, Paterson S, Winstanley C, Brockhurst MA.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8266-71. doi: 10.1073/pnas.1520056113. Epub 2016 Jul 5.

13.

Rapid evolution of microbe-mediated protection against pathogens in a worm host.

King KC, Brockhurst MA, Vasieva O, Paterson S, Betts A, Ford SA, Frost CL, Horsburgh MJ, Haldenby S, Hurst GD.

ISME J. 2016 Aug;10(8):1915-24. doi: 10.1038/ismej.2015.259. Epub 2016 Mar 15.

14.

Divergent, coexisting Pseudomonas aeruginosa lineages in chronic cystic fibrosis lung infections.

Williams D, Evans B, Haldenby S, Walshaw MJ, Brockhurst MA, Winstanley C, Paterson S.

Am J Respir Crit Care Med. 2015 Apr 1;191(7):775-85. doi: 10.1164/rccm.201409-1646OC.

15.

NOTCH1 mutations occur early during cutaneous squamous cell carcinogenesis.

South AP, Purdie KJ, Watt SA, Haldenby S, den Breems N, Dimon M, Arron ST, Kluk MJ, Aster JC, McHugh A, Xue DJ, Dayal JH, Robinson KS, Rizvi SH, Proby CM, Harwood CA, Leigh IM.

J Invest Dermatol. 2014 Oct;134(10):2630-2638. doi: 10.1038/jid.2014.154. Epub 2014 Mar 24.

16.

The complete genome sequence of Haloferax volcanii DS2, a model archaeon.

Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, Robinson J, Khouri H, Ren Q, Lowe TM, Maupin-Furlow J, Pohlschroder M, Daniels C, Pfeiffer F, Allers T, Eisen JA.

PLoS One. 2010 Mar 19;5(3):e9605. doi: 10.1371/journal.pone.0009605.

17.

RecA family proteins in archaea: RadA and its cousins.

Haldenby S, White MF, Allers T.

Biochem Soc Trans. 2009 Feb;37(Pt 1):102-7. doi: 10.1042/BST0370102.

PMID:
19143611
18.

Interactions of RadB, a DNA repair protein in archaea, with DNA and ATP.

Guy CP, Haldenby S, Brindley A, Walsh DA, Briggs GS, Warren MJ, Allers T, Bolt EL.

J Mol Biol. 2006 Apr 21;358(1):46-56. Epub 2006 Feb 21.

PMID:
16516228

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