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Items: 18

1.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.

2.

Interlaboratory evaluation of genomic signatures for predicting carcinogenicity in the rat.

Fielden MR, Nie A, McMillian M, Elangbam CS, Trela BA, Yang Y, Dunn RT 2nd, Dragan Y, Fransson-Stehen R, Bogdanffy M, Adams SP, Foster WR, Chen SJ, Rossi P, Kasper P, Jacobson-Kram D, Tatsuoka KS, Wier PJ, Gollub J, Halbert DN, Roter A, Young JK, Sina JF, Marlowe J, Martus HJ, Aubrecht J, Olaharski AJ, Roome N, Nioi P, Pardo I, Snyder R, Perry R, Lord P, Mattes W, Car BD; Predictive Safety Testing Consortium; Carcinogenicity Working Group.

Toxicol Sci. 2008 May;103(1):28-34. doi: 10.1093/toxsci/kfn022. Epub 2008 Feb 14.

PMID:
18281259
3.

Iconix Biosciences, Inc.

Fielden MR, Halbert DN.

Pharmacogenomics. 2007 Apr;8(4):401-5.

PMID:
17391077
4.

Toxicogenomics in drug discovery and development: mechanistic analysis of compound/class-dependent effects using the DrugMatrix database.

Ganter B, Snyder RD, Halbert DN, Lee MD.

Pharmacogenomics. 2006 Oct;7(7):1025-44. Review.

PMID:
17054413
5.

Variants in Apaf-1 segregating with major depression promote apoptosome function.

Harlan J, Chen Y, Gubbins E, Mueller R, Roch JM, Walter K, Lake M, Olsen T, Metzger P, Dorwin S, Ladror U, Egan DA, Severin J, Johnson RW, Holzman TF, Voelp K, Davenport C, Beck A, Potter J, Gopalakrishnan M, Hahn A, Spear BB, Halbert DN, Sullivan JP, Abkevich V, Neff CD, Skolnick MH, Shattuck D, Katz DA.

Mol Psychiatry. 2006 Jan;11(1):76-85.

PMID:
16231040
6.

Specificity of short interfering RNA determined through gene expression signatures.

Semizarov D, Frost L, Sarthy A, Kroeger P, Halbert DN, Fesik SW.

Proc Natl Acad Sci U S A. 2003 May 27;100(11):6347-52. Epub 2003 May 13.

7.

T cell activation induces a noncoding RNA transcript sensitive to inhibition by immunosuppressant drugs and encoded by the proto-oncogene, BIC.

Haasch D, Chen YW, Reilly RM, Chiou XG, Koterski S, Smith ML, Kroeger P, McWeeny K, Halbert DN, Mollison KW, Djuric SW, Trevillyan JM.

Cell Immunol. 2002 May-Jun;217(1-2):78-86.

PMID:
12426003
8.

The promise of toxicogenomics.

Waring JF, Halbert DN.

Curr Opin Mol Ther. 2002 Jun;4(3):229-35. Review.

PMID:
12139308
9.

Cloning and expression of the adenosine kinase gene from rat and human tissues.

McNally T, Helfrich RJ, Cowart M, Dorwin SA, Meuth JL, Idler KB, Klute KA, Simmer RL, Kowaluk EA, Halbert DN.

Biochem Biophys Res Commun. 1997 Feb 24;231(3):645-50.

PMID:
9070863
10.

A Colorimetric DNA Hybridization Method for the Detection of Escherichia coli in Foods.

Hsu HY, Chan SW, Sobell DI, Halbert DN, Groody EP.

J Food Prot. 1991 Apr;54(4):249-255. doi: 10.4315/0362-028X-54.4.249.

PMID:
31051629
11.

Comparative study of colorimetric DNA hybridization method and conventional culture procedure for detection of Salmonella in foods.

Chan SW, Wilson SG, Vera-Garcia M, Whippie K, Ottaviani M, Whilby A, Shah A, Johnson A, Mozola MA, Halbert DN.

J Assoc Off Anal Chem. 1990 May-Jun;73(3):419-24.

PMID:
2376546
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16.

A 28K polypeptide is the translation product of 9 S RNA encoded by region 1A of adenovirus 2.

Spector DJ, Crossland LD, Halbert DN, Raskas HJ.

Virology. 1980 Apr 15;102(1):218-21. No abstract available.

PMID:
7368568
17.

Expression of genes from the transforming region of adenovirus.

Spector DJ, Halbert DN, Crossland LD, Raskas HJ.

Cold Spring Harb Symp Quant Biol. 1980;44 Pt 1,:437-45. No abstract available.

PMID:
6933040
18.

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