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Items: 1 to 50 of 86

1.

Upper nasal hemifield location and nonspatial auditory tones accelerate visual detection during dichoptic viewing.

Mustonen T, Nuutinen M, Vainio L, Häkkinen J.

PLoS One. 2018 Jul 23;13(7):e0199962. doi: 10.1371/journal.pone.0199962. eCollection 2018.

2.

Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.

Roswall P, Bocci M, Bartoschek M, Li H, Kristiansen G, Jansson S, Lehn S, Sjölund J, Reid S, Larsson C, Eriksson P, Anderberg C, Cortez E, Saal LH, Orsmark-Pietras C, Cordero E, Haller BK, Häkkinen J, Burvenich IJG, Lim E, Orimo A, Höglund M, Rydén L, Moch H, Scott AM, Eriksson U, Pietras K.

Nat Med. 2018 May;24(4):463-473. doi: 10.1038/nm.4494. Epub 2018 Mar 12.

PMID:
29529015
3.

Frequent miRNA-convergent fusion gene events in breast cancer.

Persson H, Søkilde R, Häkkinen J, Pirona AC, Vallon-Christersson J, Kvist A, Mertens F, Borg Å, Mitelman F, Höglund M, Rovira C.

Nat Commun. 2017 Oct 5;8(1):788. doi: 10.1038/s41467-017-01176-1.

4.

CFS MATLAB toolbox: An experiment builder for continuous flash suppression (CFS) task.

Nuutinen M, Mustonen T, Häkkinen J.

Behav Res Methods. 2017 Sep 15. doi: 10.3758/s13428-017-0961-z. [Epub ahead of print]

PMID:
28917032
5.

Stereoscopy Amplifies Emotions Elicited by Facial Expressions.

Hakala J, Kätsyri J, Häkkinen J.

Iperception. 2015 Nov 20;6(6):2041669515615071. doi: 10.1177/2041669515615071. eCollection 2015 Dec.

6.

Turning water into rock: The inverted waves effect.

Häkkinen J, Gröhn L.

Iperception. 2016 Feb 1;7(1):2041669515627951. doi: 10.1177/2041669515627951. eCollection 2016 Jan-Feb.

7.

Perception of stereoscopic direct gaze: The effects of interaxial distance and emotional facial expressions.

Hakala J, Kätsyri J, Takala T, Häkkinen J.

J Vis. 2016 Jul 1;16(9):5. doi: 10.1167/16.9.5.

PMID:
27442954
8.

Population-level and Individual-level Bother of Lower Urinary Tract Symptoms Among 30- to 80-year-old Men.

Pöyhönen A, Auvinen A, Häkkinen JT, Koskimäki J, Tammela TL.

Urology. 2016 Sep;95:164-70. doi: 10.1016/j.urology.2016.06.023. Epub 2016 Jun 24.

PMID:
27349526
9.

Targeted sequencing of BRCA1 and BRCA2 across a large unselected breast cancer cohort suggests that one-third of mutations are somatic.

Winter C, Nilsson MP, Olsson E, George AM, Chen Y, Kvist A, Törngren T, Vallon-Christersson J, Hegardt C, Häkkinen J, Jönsson G, Grabau D, Malmberg M, Kristoffersson U, Rehn M, Gruvberger-Saal SK, Larsson C, Borg Å, Loman N, Saal LH.

Ann Oncol. 2016 Aug;27(8):1532-8. doi: 10.1093/annonc/mdw209. Epub 2016 May 18.

10.

CVD2014-A Database for Evaluating No-Reference Video Quality Assessment Algorithms.

Nuutinen M, Virtanen T, Vaahteranoksa M, Vuori T, Oittinen P, Hakkinen J.

IEEE Trans Image Process. 2016 Jul;25(7):3073-86. doi: 10.1109/TIP.2016.2562513. Epub 2016 May 3.

PMID:
27164589
11.

The effect of introspection on judgment and decision making is dependent on the quality of conscious thinking.

Leisti T, Häkkinen J.

Conscious Cogn. 2016 May;42:340-351. doi: 10.1016/j.concog.2016.04.008. Epub 2016 Apr 28.

PMID:
27131852
12.

Visual Performance With Small Concave and Convex Displays.

Mustonen T, Kimmel J, Hakala J, Häkkinen J.

Hum Factors. 2015 Sep;57(6):1029-50. doi: 10.1177/0018720815570090. Epub 2015 Feb 10.

PMID:
25850112
13.

The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine.

Saal LH, Vallon-Christersson J, Häkkinen J, Hegardt C, Grabau D, Winter C, Brueffer C, Tang MH, Reuterswärd C, Schulz R, Karlsson A, Ehinger A, Malina J, Manjer J, Malmberg M, Larsson C, Rydén L, Loman N, Borg Å.

Genome Med. 2015 Feb 2;7(1):20. doi: 10.1186/s13073-015-0131-9. eCollection 2015.

14.

VQone MATLAB toolbox: A graphical experiment builder for image and video quality evaluations: VQone MATLAB toolbox.

Nuutinen M, Virtanen T, Rummukainen O, Häkkinen J.

Behav Res Methods. 2016 Mar;48(1):138-50. doi: 10.3758/s13428-014-0555-y. Epub 2015 Jan 17.

PMID:
25595311
15.

CID2013: a database for evaluating no-reference image quality assessment algorithms.

Virtanen T, Nuutinen M, Vaahteranoksa M, Oittinen P, Hakkinen J.

IEEE Trans Image Process. 2015 Jan;24(1):390-402. doi: 10.1109/TIP.2014.2378061. Epub 2014 Dec 4.

PMID:
25494511
16.

NAPL migration and ecotoxicity of conventional and renewable fuels in accidental spill scenarios.

Malk V, Barreto Tejera E, Simpanen S, Dahl M, Mäkelä R, Häkkinen J, Kiiski A, Penttinen OP.

Environ Sci Pollut Res Int. 2014;21(16):9861-76. doi: 10.1007/s11356-014-2851-6. Epub 2014 Apr 25.

PMID:
24764004
17.

Molecular and genetic diversity in the metastatic process of melanoma.

Harbst K, Lauss M, Cirenajwis H, Winter C, Howlin J, Törngren T, Kvist A, Nodin B, Olsson E, Häkkinen J, Jirström K, Staaf J, Lundgren L, Olsson H, Ingvar C, Gruvberger-Saal SK, Saal LH, Jönsson G.

J Pathol. 2014 May;233(1):39-50. doi: 10.1002/path.4318. Epub 2014 Jan 27.

18.

Outcomes of medical and surgical treatment for lower urinary tract symptoms (benign prostatic obstruction)--a population-based cohort study.

Pöyhönen A, Auvinen A, Häkkinen JT, Koskimäki J, Hakama M, Tammela TL.

Int J Clin Pract. 2014 Mar;68(3):349-55. doi: 10.1111/ijcp.12318. Epub 2013 Dec 22.

PMID:
24372641
19.

Concurrent explanations can enhance visual decision making.

Leisti T, Radun J, Virtanen T, Nyman G, Häkkinen J.

Acta Psychol (Amst). 2014 Jan;145:65-74. doi: 10.1016/j.actpsy.2013.11.001. Epub 2013 Dec 1.

PMID:
24301018
20.

Natural course of lower urinary tract symptoms in men not requiring treatment--a 5-year longitudinal population-based study.

Pöyhönen A, Häkkinen JT, Koskimäki J, Tammela TL, Auvinen A.

Urology. 2014 Feb;83(2):411-5. doi: 10.1016/j.urology.2013.10.003. Epub 2013 Nov 15.

PMID:
24246327
21.

Visual task performance using a monocular see-through head-mounted display (HMD) while walking.

Mustonen T, Berg M, Kaistinen J, Kawai T, Häkkinen J.

J Exp Psychol Appl. 2013 Dec;19(4):333-44. doi: 10.1037/a0034635. Epub 2013 Nov 4.

PMID:
24188332
22.

Empirical evaluation of grouping of lower urinary tract symptoms: principal component analysis of Tampere Ageing Male Urological Study data.

Pöyhönen A, Häkkinen JT, Koskimäki J, Hakama M, Tammela TL, Auvinen A.

BJU Int. 2013 Mar;111(3):467-73. doi: 10.1111/j.1464-410X.2012.11593.x. Epub 2012 Oct 26.

23.

Prevalence and bother of postmicturition dribble in Finnish men aged 30-80 years: Tampere Ageing Male Urologic Study (TAMUS).

Pöyhönen A, Auvinen A, Koskimäki J, Hakama M, Tammela TL, Häkkinen JT.

Scand J Urol Nephrol. 2012 Dec;46(6):418-23. doi: 10.3109/00365599.2012.702786. Epub 2012 Jul 27.

PMID:
22835055
24.

Molecular microheterogeneity of prostate specific antigen in seminal fluid by mass spectrometry.

Végvári Á, Rezeli M, Sihlbom C, Häkkinen J, Carlsohn E, Malm J, Lilja H, Laurell T, Marko-Varga G.

Clin Biochem. 2012 Mar;45(4-5):331-8. doi: 10.1016/j.clinbiochem.2011.11.018. Epub 2011 Dec 16.

25.

Prevalence of hesitancy in 30-80-year-old Finnish men: Tampere Ageing Male Urological Study (TAMUS).

Pöyhönen A, Häkkinen JT, Koskimäki J, Hakama M, Tammela TL, Auvinen A.

BJU Int. 2012 May;109(9):1360-4. doi: 10.1111/j.1464-410X.2011.10443.x. Epub 2011 Aug 24.

26.

Bioinformatic strategies for unambiguous identification of prostate specific antigen in clinical samples.

Végvári A, Rezeli M, Häkkinen J, Sihlbom C, Carlsohn E, Malm J, Lilja H, Laurell T, Marko-Varga G.

J Proteomics. 2011 Dec 10;75(1):202-10. doi: 10.1016/j.jprot.2011.06.008. Epub 2011 Jun 23.

27.

GOBO: gene expression-based outcome for breast cancer online.

Ringnér M, Fredlund E, Häkkinen J, Borg Å, Staaf J.

PLoS One. 2011 Mar 21;6(3):e17911. doi: 10.1371/journal.pone.0017911.

28.

Laboratory data and sample management for proteomics.

Häkkinen J, Levander F.

Methods Mol Biol. 2011;696:79-92. doi: 10.1007/978-1-60761-987-1_5.

PMID:
21063942
29.

BASE--2nd generation software for microarray data management and analysis.

Vallon-Christersson J, Nordborg N, Svensson M, Häkkinen J.

BMC Bioinformatics. 2009 Oct 12;10:330. doi: 10.1186/1471-2105-10-330.

30.

Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.

Eisenacher M, Martens L, Barsnes H, Hardt T, Kohl M, Häkkinen J, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2009 Jul;9(14):3626-9. doi: 10.1002/pmic.200900205.

PMID:
19639582
31.

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

Eisenacher M, Martens L, Hardt T, Kohl M, Barsnes H, Helsens K, Häkkinen J, Levander F, Aebersold R, Vandekerckhove J, Dunn MJ, Lisacek F, Siepen JA, Hubbard SJ, Binz PA, Blüggel M, Thiele H, Cottrell J, Meyer HE, Apweiler R, Stephan C.

Proteomics. 2009 Aug;9(15):3928-33. doi: 10.1002/pmic.200900247.

PMID:
19637238
32.

More study needed on morning erections and erectile dysfunction.

Koskimäki J, Shiri R, Tammela T, Häkkinen J, Hakama M, Auvinen A.

Am J Med. 2009 Jul;122(7):e7-8. doi: 10.1016/j.amjmed.2009.02.001. No abstract available.

PMID:
19559154
33.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
34.

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands.

Eisenacher M, Kohl M, Martens L, Barsnes H, Hardt T, Levander F, Häkkinen J, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2009 Jan;9(2):218-22. doi: 10.1002/pmic.200800732.

PMID:
19105180
35.

Proteomics Data Collection - 3rd ProDaC workshop April 22nd 2008, Toledo, Spain.

Eisenacher M, Hardt T, Martens L, Häkkinen J, Apweiler R, Hamacher M, Meyer HE, Stephan C.

Proteomics. 2008 Oct;8(20):4163-7. doi: 10.1002/pmic.200800515.

PMID:
18814333
36.

The effects of lifestyle factors on the incidence of nocturia.

Shiri R, Hakama M, Häkkinen J, Auvinen A, Huhtala H, Tammela TL, Koskimäki J.

J Urol. 2008 Nov;180(5):2059-62. doi: 10.1016/j.juro.2008.07.042. Epub 2008 Sep 18.

PMID:
18804241
37.

Regular intercourse protects against erectile dysfunction: Tampere Aging Male Urologic Study.

Koskimäki J, Shiri R, Tammela T, Häkkinen J, Hakama M, Auvinen A.

Am J Med. 2008 Jul;121(7):592-6. doi: 10.1016/j.amjmed.2008.02.042. Epub 2008 Jun 4.

PMID:
18538297
38.

Depressive symptoms increase the incidence of nocturia: Tampere Aging Male Urologic Study (TAMUS).

Häkkinen JT, Shiri R, Koskimäki J, Tammela TL, Auvinen A, Hakama M.

J Urol. 2008 May;179(5):1897-901. doi: 10.1016/j.juro.2008.01.037. Epub 2008 Mar 18.

PMID:
18353384
39.

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea.

Eisenacher M, Hardt T, Hamacher M, Martens L, Häkkinen J, Levander F, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2008 Apr;8(7):1326-30. doi: 10.1002/pmic.200701098.

PMID:
18318011
40.

Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France.

Eisenacher M, Hardt T, Hamacher M, Martens L, Häkkinen J, Levander F, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2007 Sep;7(17):3034-7.

PMID:
17683037
41.

Proteomic variation is as large within as between strawberry varieties.

Alm R, Ekefjärd A, Krogh M, Häkkinen J, Emanuelsson C.

J Proteome Res. 2007 Aug;6(8):3011-20. Epub 2007 Jul 4.

PMID:
17608511
42.

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry.

Potthast F, Gerrits B, Häkkinen J, Rutishauser D, Ahrens CH, Roschitzki B, Baerenfaller K, Munton RP, Walther P, Gehrig P, Seif P, Seeberger PH, Schlapbach R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jul 1;854(1-2):173-82. Epub 2007 Apr 25.

PMID:
17513179
43.

Automated reporting from gel-based proteomics experiments using the open source Proteios database application.

Levander F, Krogh M, Wårell K, Gärdén P, James P, Häkkinen J.

Proteomics. 2007 Mar;7(5):668-74.

PMID:
17295359
44.

Bidirectional relationship between depression and erectile dysfunction.

Shiri R, Koskimäki J, Tammela TL, Häkkinen J, Auvinen A, Hakama M.

J Urol. 2007 Feb;177(2):669-73.

PMID:
17222655
45.

Smoking causes erectile dysfunction through vascular disease.

Shiri R, Häkkinen J, Koskimäki J, Tammela TL, Auvinen A, Hakama M.

Urology. 2006 Dec;68(6):1318-22. Epub 2006 Dec 4.

PMID:
17141835
46.

Incidence of nocturia in 50 to 80-year-old Finnish men.

Häkkinen JT, Hakama M, Shiri R, Auvinen A, Tammela TL, Koskimäki J.

J Urol. 2006 Dec;176(6 Pt 1):2541-5; discussion 2545.

PMID:
17085153
47.

Erectile dysfunction influences the subsequent incidence of lower urinary tract symptoms and bother.

Shiri R, Häkkinen J, Koskimäki J, Hakama M, Tammela TL, Auvinen A.

Int J Impot Res. 2007 May-Jun;19(3):317-20. Epub 2006 Nov 2.

PMID:
17080093
48.

Fluence rate or cumulative dose? Vulnerability of larval northern pike (Esox lucius) to ultraviolet radiation.

Vehniäinen ER, Häkkinen JM, Oikari AO.

Photochem Photobiol. 2007 Mar-Apr;83(2):444-9.

PMID:
17076542
49.

Cardiovascular drug use and the incidence of erectile dysfunction.

Shiri R, Koskimäki J, Häkkinen J, Auvinen A, Tammela TL, Hakama M.

Int J Impot Res. 2007 Mar-Apr;19(2):208-12. Epub 2006 Aug 10.

PMID:
16900205
50.

Impact of LUTS using bother index in DAN-PSS-1 questionnaire.

Häkkinen JT, Hakama M, Huhtala H, Shiri R, Auvinen A, Tammela TL, Koskimäki J.

Eur Urol. 2007 Feb;51(2):473-7; discussion 477-8. Epub 2006 Jun 23.

PMID:
16879907

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