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Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project.

Bozek J, Makropoulos A, Schuh A, Fitzgibbon S, Wright R, Glasser MF, Coalson TS, O'Muircheartaigh J, Hutter J, Price AN, Cordero-Grande L, Teixeira RPAG, Hughes E, Tusor N, Baruteau KP, Rutherford MA, Edwards AD, Hajnal JV, Smith SM, Rueckert D, Jenkinson M, Robinson EC.

Neuroimage. 2018 Jun 13;179:11-29. doi: 10.1016/j.neuroimage.2018.06.018. [Epub ahead of print]


Neurodevelopmental Correlates of Fetal Motor Behavior Assessed Using Cine MR Imaging.

Hayat TTA, Martinez-Biarge M, Kyriakopoulou V, Hajnal JV, Rutherford MA.

AJNR Am J Neuroradiol. 2018 Jun 7. doi: 10.3174/ajnr.A5694. [Epub ahead of print]


Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project.

Bastiani M, Andersson JLR, Cordero-Grande L, Murgasova M, Hutter J, Price AN, Makropoulos A, Fitzgibbon SP, Hughes E, Rueckert D, Victor S, Rutherford M, Edwards AD, Smith SM, Tournier JD, Hajnal JV, Jbabdi S, Sotiropoulos SN.

Neuroimage. 2018 May 28. pii: S1053-8119(18)30488-9. doi: 10.1016/j.neuroimage.2018.05.064. [Epub ahead of print] Review.


Different patterns of cortical maturation before and after 38 weeks gestational age demonstrated by diffusion MRI in vivo.

Batalle D, O'Muircheartaigh J, Makropoulos A, Kelly CJ, Dimitrova R, Hughes EJ, Hajnal JV, Zhang H, Alexander DC, Edwards AD, Counsell SJ.

Neuroimage. 2018 May 23. pii: S1053-8119(18)30460-9. doi: 10.1016/j.neuroimage.2018.05.046. [Epub ahead of print]


Whole-brain 3D FLAIR at 7T using direct signal control.

Beqiri A, Hoogduin H, Sbrizzi A, Hajnal JV, Malik SJ.

Magn Reson Med. 2018 Feb 24. doi: 10.1002/mrm.27149. [Epub ahead of print]


The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction.

Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, Cordero-Grande L, Hughes E, Tusor N, Tournier JD, Hutter J, Price AN, Teixeira RPAG, Murgasova M, Victor S, Kelly C, Rutherford MA, Smith SM, Edwards AD, Hajnal JV, Jenkinson M, Rueckert D.

Neuroimage. 2018 Jun;173:88-112. doi: 10.1016/j.neuroimage.2018.01.054. Epub 2018 Jan 31.


Stresses and strains on the human fetal skeleton during development.

Verbruggen SW, Kainz B, Shelmerdine SC, Hajnal JV, Rutherford MA, Arthurs OJ, Phillips ATM, Nowlan NC.

J R Soc Interface. 2018 Jan;15(138). pii: 20170593. doi: 10.1098/rsif.2017.0593.


Distortion correction of echo planar images applying the concept of finite rate of innovation to point spread function mapping (FRIP).

Nunes RG, Hajnal JV.

MAGMA. 2018 Jun;31(3):449-456. doi: 10.1007/s10334-017-0669-1. Epub 2018 Jan 3.


Extended phase graph formalism for systems with magnetization transfer and exchange.

Malik SJ, Teixeira RPAG, Hajnal JV.

Magn Reson Med. 2018 Aug;80(2):767-779. doi: 10.1002/mrm.27040. Epub 2017 Dec 15.


Placenta microstructure and microcirculation imaging with diffusion MRI.

Slator PJ, Hutter J, McCabe L, Gomes ADS, Price AN, Panagiotaki E, Rutherford MA, Hajnal JV, Alexander DC.

Magn Reson Med. 2018 Aug;80(2):756-766. doi: 10.1002/mrm.27036. Epub 2017 Dec 11.


Machine learning shows association between genetic variability in PPARG and cerebral connectivity in preterm infants.

Krishnan ML, Wang Z, Aljabar P, Ball G, Mirza G, Saxena A, Counsell SJ, Hajnal JV, Montana G, Edwards AD.

Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):13744-13749. doi: 10.1073/pnas.1704907114. Epub 2017 Dec 11.


An efficient sequence for fetal brain imaging at 3T with enhanced T1 contrast and motion robustness.

Ferrazzi G, Price AN, Teixeira RPAG, Cordero-Grande L, Hutter J, Gomes A, Padormo F, Hughes E, Schneider T, Rutherford M, Kuklisova Murgasova M, Hajnal JV.

Magn Reson Med. 2018 Jul;80(1):137-146. doi: 10.1002/mrm.27012. Epub 2017 Nov 28.


Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery.

Kelly CJ, Makropoulos A, Cordero-Grande L, Hutter J, Price A, Hughes E, Murgasova M, Teixeira RPAG, Steinweg JK, Kulkarni S, Rahman L, Zhang H, Alexander DC, Pushparajah K, Rueckert D, Hajnal JV, Simpson J, Edwards AD, Rutherford MA, Counsell SJ.

Sci Rep. 2017 Nov 8;7(1):15088. doi: 10.1038/s41598-017-14939-z.


Inner-volume echo volumar imaging (IVEVI) for robust fetal brain imaging.

Nunes RG, Ferrazzi G, Price AN, Hutter J, Gaspar AS, Rutherford MA, Hajnal JV.

Magn Reson Med. 2018 Jul;80(1):279-285. doi: 10.1002/mrm.26998. Epub 2017 Nov 8.


Punctate White Matter Lesions Associated With Altered Brain Development And Adverse Motor Outcome In Preterm Infants.

Tusor N, Benders MJ, Counsell SJ, Nongena P, Ederies MA, Falconer S, Chew A, Gonzalez-Cinca N, Hajnal JV, Gangadharan S, Chatzi V, Kersbergen KJ, Kennea N, Azzopardi DV, Edwards AD.

Sci Rep. 2017 Oct 16;7(1):13250. doi: 10.1038/s41598-017-13753-x.


A Deep Cascade of Convolutional Neural Networks for Dynamic MR Image Reconstruction.

Schlemper J, Caballero J, Hajnal JV, Price AN, Rueckert D.

IEEE Trans Med Imaging. 2018 Feb;37(2):491-503. doi: 10.1109/TMI.2017.2760978. Epub 2017 Oct 13.


PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI.

Alansary A, Rajchl M, McDonagh SG, Murgasova M, Damodaram M, Lloyd DFA, Davidson A, Rutherford M, Hajnal JV, Rueckert D, Kainz B.

IEEE Trans Med Imaging. 2017 Oct;36(10):2031-2044. doi: 10.1109/TMI.2017.2737081. Epub 2017 Sep 1.


Quiet echo planar imaging for functional and diffusion MRI.

Hutter J, Price AN, Cordero-Grande L, Malik S, Ferrazzi G, Gaspar A, Hughes EJ, Christiaens D, McCabe L, Schneider T, Rutherford MA, Hajnal JV.

Magn Reson Med. 2018 Mar;79(3):1447-1459. doi: 10.1002/mrm.26810. Epub 2017 Jun 26.


Three-dimensional motion corrected sensitivity encoding reconstruction for multi-shot multi-slice MRI: Application to neonatal brain imaging.

Cordero-Grande L, Hughes EJ, Hutter J, Price AN, Hajnal JV.

Magn Reson Med. 2018 Mar;79(3):1365-1376. doi: 10.1002/mrm.26796. Epub 2017 Jun 19.


Time-efficient and flexible design of optimized multishell HARDI diffusion.

Hutter J, Tournier JD, Price AN, Cordero-Grande L, Hughes EJ, Malik S, Steinweg J, Bastiani M, Sotiropoulos SN, Jbabdi S, Andersson J, Edwards AD, Hajnal JV.

Magn Reson Med. 2018 Mar;79(3):1276-1292. doi: 10.1002/mrm.26765. Epub 2017 May 30.


A tract-specific approach to assessing white matter in preterm infants.

Pecheva D, Yushkevich P, Batalle D, Hughes E, Aljabar P, Wurie J, Hajnal JV, Edwards AD, Alexander DC, Counsell SJ, Zhang H.

Neuroimage. 2017 Aug 15;157:675-694. doi: 10.1016/j.neuroimage.2017.04.057. Epub 2017 Apr 27.


Fetal cardiac cine imaging using highly accelerated dynamic MRI with retrospective motion correction and outlier rejection.

van Amerom JFP, Lloyd DFA, Price AN, Kuklisova Murgasova M, Aljabar P, Malik SJ, Lohezic M, Rutherford MA, Pushparajah K, Razavi R, Hajnal JV.

Magn Reson Med. 2018 Jan;79(1):327-338. doi: 10.1002/mrm.26686. Epub 2017 Apr 3.


Joint system relaxometry (JSR) and Crámer-Rao lower bound optimization of sequence parameters: A framework for enhanced precision of DESPOT T1 and T2 estimation.

Teixeira RPAG, Malik SJ, Hajnal JV.

Magn Reson Med. 2018 Jan;79(1):234-245. doi: 10.1002/mrm.26670. Epub 2017 Mar 16.


Placenta Maps: In Utero Placental Health Assessment of the Human Fetus.

Miao H, Mistelbauer G, Karimov A, Alansary A, Davidson A, Lloyd DFA, Damodaram M, Story L, Hutter J, Hajnal JV, Rutherford M, Preim B, Kainz B, Groller ME.

IEEE Trans Vis Comput Graph. 2017 Jun;23(6):1612-1623. doi: 10.1109/TVCG.2017.2674938. Epub 2017 Feb 24.


Distortion Correction in Fetal EPI Using Non-Rigid Registration With a Laplacian Constraint.

Kuklisova-Murgasova M, Lockwood Estrin G, Nunes RG, Malik SJ, Rutherford MA, Rueckert D, Hajnal JV.

IEEE Trans Med Imaging. 2018 Jan;37(1):12-19. doi: 10.1109/TMI.2017.2667227. Epub 2017 Feb 9.


Extended RF shimming: Sequence-level parallel transmission optimization applied to steady-state free precession MRI of the heart.

Beqiri A, Price AN, Padormo F, Hajnal JV, Malik SJ.

NMR Biomed. 2017 Jun;30(6). doi: 10.1002/nbm.3701. Epub 2017 Feb 14.


Early development of structural networks and the impact of prematurity on brain connectivity.

Batalle D, Hughes EJ, Zhang H, Tournier JD, Tusor N, Aljabar P, Wali L, Alexander DC, Hajnal JV, Nosarti C, Edwards AD, Counsell SJ.

Neuroimage. 2017 Apr 1;149:379-392. doi: 10.1016/j.neuroimage.2017.01.065. Epub 2017 Jan 30.


Optimized amplitude modulated multiband RF pulse design.

Abo Seada S, Price AN, Hajnal JV, Malik SJ.

Magn Reson Med. 2017 Dec;78(6):2185-2193. doi: 10.1002/mrm.26610. Epub 2017 Jan 17.


Normative biometry of the fetal brain using magnetic resonance imaging.

Kyriakopoulou V, Vatansever D, Davidson A, Patkee P, Elkommos S, Chew A, Martinez-Biarge M, Hagberg B, Damodaram M, Allsop J, Fox M, Hajnal JV, Rutherford MA.

Brain Struct Funct. 2017 Jul;222(5):2295-2307. doi: 10.1007/s00429-016-1342-6. Epub 2016 Nov 24.


DeepCut: Object Segmentation From Bounding Box Annotations Using Convolutional Neural Networks.

Rajchl M, Lee MC, Oktay O, Kamnitsas K, Passerat-Palmbach J, Bai W, Damodaram M, Rutherford MA, Hajnal JV, Kainz B, Rueckert D.

IEEE Trans Med Imaging. 2017 Feb;36(2):674-683. doi: 10.1109/TMI.2016.2621185. Epub 2016 Nov 9.


A dedicated neonatal brain imaging system.

Hughes EJ, Winchman T, Padormo F, Teixeira R, Wurie J, Sharma M, Fox M, Hutter J, Cordero-Grande L, Price AN, Allsop J, Bueno-Conde J, Tusor N, Arichi T, Edwards AD, Rutherford MA, Counsell SJ, Hajnal JV.

Magn Reson Med. 2017 Aug;78(2):794-804. doi: 10.1002/mrm.26462. Epub 2016 Sep 19.


An exploration of the potential utility of fetal cardiovascular MRI as an adjunct to fetal echocardiography.

Lloyd DF, van Amerom JF, Pushparajah K, Simpson JM, Zidere V, Miller O, Sharland G, Allsop J, Fox M, Lohezic M, Murgasova M, Malamateniou C, Hajnal JV, Rutherford M, Razavi R.

Prenat Diagn. 2016 Oct;36(10):916-925. doi: 10.1002/pd.4912. Epub 2016 Aug 31.


Optimal control design of turbo spin-echo sequences with applications to parallel-transmit systems.

Sbrizzi A, Hoogduin H, Hajnal JV, van den Berg CA, Luijten PR, Malik SJ.

Magn Reson Med. 2017 Jan;77(1):361-373. doi: 10.1002/mrm.26084. Epub 2016 Jan 22.


RF system calibration for global Q matrix determination.

Padormo F, Beqiri A, Malik SJ, Hajnal JV.

Magn Reson Imaging. 2016 Jun;34(5):690-3. doi: 10.1016/j.mri.2015.12.039. Epub 2015 Dec 30.


An exploration of task based fMRI in neonates using echo-shifting to allow acquisition at longer TE without loss of temporal efficiency.

Ferrazzi G, Nunes RG, Arichi T, Gaspar AS, Barone G, Allievi A, Vasylechko S, Abaei M, Hughes E, Rueckert D, Price AN, Hajnal JV.

Neuroimage. 2016 Feb 15;127:298-306. doi: 10.1016/j.neuroimage.2015.12.025. Epub 2015 Dec 19.


Modeling the biomechanics of fetal movements.

Verbruggen SW, Loo JH, Hayat TT, Hajnal JV, Rutherford MA, Phillips AT, Nowlan NC.

Biomech Model Mechanobiol. 2016 Aug;15(4):995-1004. doi: 10.1007/s10237-015-0738-1. Epub 2015 Nov 3.


Regional growth and atlasing of the developing human brain.

Makropoulos A, Aljabar P, Wright R, Hüning B, Merchant N, Arichi T, Tusor N, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D.

Neuroimage. 2016 Jan 15;125:456-478. doi: 10.1016/j.neuroimage.2015.10.047. Epub 2015 Oct 21.


Phase relaxed localized excitation pulses for inner volume fast spin echo imaging.

Malik SJ, Hajnal JV.

Magn Reson Med. 2016 Sep;76(3):848-61. doi: 10.1002/mrm.25996. Epub 2015 Oct 9.


Machine-learning to characterise neonatal functional connectivity in the preterm brain.

Ball G, Aljabar P, Arichi T, Tusor N, Cox D, Merchant N, Nongena P, Hajnal JV, Edwards AD, Counsell SJ.

Neuroimage. 2016 Jan 1;124(Pt A):267-275. doi: 10.1016/j.neuroimage.2015.08.055. Epub 2015 Sep 2.


Large dynamic range relative B1+ mapping.

Padormo F, Hess AT, Aljabar P, Malik SJ, Jezzard P, Robson MD, Hajnal JV, Koopmans PJ.

Magn Reson Med. 2016 Aug;76(2):490-9. doi: 10.1002/mrm.25884. Epub 2015 Aug 26.


Correction: Brain Extraction Using Label Propagation and Group Agreement: Pincram.

Heckemann RA, Ledig C, Gray KR, Aljabar P, Rueckert D, Hajnal JV, Hammers A.

PLoS One. 2015 Aug 12;10(8):e0135746. doi: 10.1371/journal.pone.0135746. eCollection 2015. No abstract available.


Brain Extraction Using Label Propagation and Group Agreement: Pincram.

Heckemann RA, Ledig C, Gray KR, Aljabar P, Rueckert D, Hajnal JV, Hammers A.

PLoS One. 2015 Jul 10;10(7):e0129211. doi: 10.1371/journal.pone.0129211. eCollection 2015. Erratum in: PLoS One. 2015;10(8):e0135746.


Construction of a fetal spatio-temporal cortical surface atlas from in utero MRI: Application of spectral surface matching.

Wright R, Makropoulos A, Kyriakopoulou V, Patkee PA, Koch LM, Rutherford MA, Hajnal JV, Rueckert D, Aljabar P.

Neuroimage. 2015 Oct 15;120:467-80. doi: 10.1016/j.neuroimage.2015.05.087. Epub 2015 Jun 10.


Parallel transmission for ultrahigh-field imaging.

Padormo F, Beqiri A, Hajnal JV, Malik SJ.

NMR Biomed. 2016 Sep;29(9):1145-61. doi: 10.1002/nbm.3313. Epub 2015 May 19. Review.


Discriminative dictionary learning for abdominal multi-organ segmentation.

Tong T, Wolz R, Wang Z, Gao Q, Misawa K, Fujiwara M, Mori K, Hajnal JV, Rueckert D.

Med Image Anal. 2015 Jul;23(1):92-104. doi: 10.1016/ Epub 2015 May 5.


Specialization and integration of functional thalamocortical connectivity in the human infant.

Toulmin H, Beckmann CF, O'Muircheartaigh J, Ball G, Nongena P, Makropoulos A, Ederies A, Counsell SJ, Kennea N, Arichi T, Tusor N, Rutherford MA, Azzopardi D, Gonzalez-Cinca N, Hajnal JV, Edwards AD.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6485-90. doi: 10.1073/pnas.1422638112. Epub 2015 May 4.


Fast Volume Reconstruction From Motion Corrupted Stacks of 2D Slices.

Kainz B, Steinberger M, Wein W, Kuklisova-Murgasova M, Malamateniou C, Keraudren K, Torsney-Weir T, Rutherford M, Aljabar P, Hajnal JV, Rueckert D.

IEEE Trans Med Imaging. 2015 Sep;34(9):1901-13. doi: 10.1109/TMI.2015.2415453. Epub 2015 Mar 20.


Early metacarpal bone mineral density loss using digital x-ray radiogrammetry and 3-tesla wrist MRI in established rheumatoid arthritis: a longitudinal one-year observational study.

Rastogi A, Algulin J, Mangat P, Lim AK, Satchithananda K, Hajnal JV, Taylor PC.

Arthritis. 2015;2015:852989. doi: 10.1155/2015/852989. Epub 2015 Feb 17.


Specific absorption rate in neonates undergoing magnetic resonance procedures at 1.5 T and 3 T.

Malik SJ, Beqiri A, Price AN, Teixeira JN, Hand JW, Hajnal JV.

NMR Biomed. 2015 Mar;28(3):344-52. doi: 10.1002/nbm.3256. Epub 2015 Jan 16.


Motion corrected 3D reconstruction of the fetal thorax from prenatal MRI.

Kainz B, Malamateniou C, Murgasova M, Keraudren K, Rutherford M, Hajnal JV, Rueckert D.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):284-91.

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