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Items: 1 to 50 of 71


Validation of COI metabarcoding primers for terrestrial arthropods.

Elbrecht V, Braukmann TWA, Ivanova NV, Prosser SWJ, Hajibabaei M, Wright M, Zakharov EV, Hebert PDN, Steinke D.

PeerJ. 2019 Oct 7;7:e7745. doi: 10.7717/peerj.7745. eCollection 2019.


Comparing the microbial inhibition of nanofibres with multi-metal ion exchanged nano-zeolite Y in air sampling.

Zendehdel R, Goli F, Hajibabaei M.

J Appl Microbiol. 2019 Sep 19. doi: 10.1111/jam.14455. [Epub ahead of print]


COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems.

Hajibabaei M, Porter TM, Wright M, Rudar J.

PLoS One. 2019 Sep 12;14(9):e0220953. doi: 10.1371/journal.pone.0220953. eCollection 2019.


Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater.

Singer GAC, Fahner NA, Barnes JG, McCarthy A, Hajibabaei M.

Sci Rep. 2019 Apr 12;9(1):5991. doi: 10.1038/s41598-019-42455-9.


Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach 1.

Farrell MJ, Govender D, Hajibabaei M, van der Bank M, Davies TJ.

Genome. 2019 Mar;62(3):229-242. doi: 10.1139/gen-2018-0064. Epub 2018 Nov 29.


Fecal source tracking and eDNA profiling in an urban creek following an extreme rain event.

Staley ZR, Chuong JD, Hill SJ, Grabuski J, Shokralla S, Hajibabaei M, Edge TA.

Sci Rep. 2018 Sep 26;8(1):14390. doi: 10.1038/s41598-018-32680-z.


Factors Affecting the Incidence and Severity of Oral Mucositis Following Hematopoietic Stem Cell Transplantation.

Valeh M, Kargar M, Mansouri A, Kamranzadeh H, Gholami K, Heidari K, Hajibabaei M.

Int J Hematol Oncol Stem Cell Res. 2018 Apr 1;12(2):142-152.


Over 2.5 million COI sequences in GenBank and growing.

Porter TM, Hajibabaei M.

PLoS One. 2018 Sep 7;13(9):e0200177. doi: 10.1371/journal.pone.0200177. eCollection 2018.


Determinants of Soil Bacterial and Fungal Community Composition Toward Carbon-Use Efficiency Across Primary and Secondary Forests in a Costa Rican Conservation Area.

McGee KM, Eaton WD, Shokralla S, Hajibabaei M.

Microb Ecol. 2019 Jan;77(1):148-167. doi: 10.1007/s00248-018-1206-0. Epub 2018 Jun 1.


Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples.

Bista I, Carvalho GR, Tang M, Walsh K, Zhou X, Hajibabaei M, Shokralla S, Seymour M, Bradley D, Liu S, Christmas M, Creer S.

Mol Ecol Resour. 2018 Apr 18. doi: 10.1111/1755-0998.12888. [Epub ahead of print]


Environmental DNA filtration techniques affect recovered biodiversity.

Majaneva M, Diserud OH, Eagle SHC, Boström E, Hajibabaei M, Ekrem T.

Sci Rep. 2018 Mar 16;8(1):4682. doi: 10.1038/s41598-018-23052-8.


Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient.

Emilson CE, Thompson DG, Venier LA, Porter TM, Swystun T, Chartrand D, Capell S, Hajibabaei M.

Sci Rep. 2018 Mar 12;8(1):4578. doi: 10.1038/s41598-018-22978-3.


Automated high throughput animal CO1 metabarcode classification.

Porter TM, Hajibabaei M.

Sci Rep. 2018 Mar 9;8(1):4226. doi: 10.1038/s41598-018-22505-4.


Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis.

Porter TM, Hajibabaei M.

Mol Ecol. 2018 Jan;27(2):313-338. doi: 10.1111/mec.14478. Epub 2018 Mar 3. Review.


DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities.

Lobo J, Shokralla S, Costa MH, Hajibabaei M, Costa FO.

Sci Rep. 2017 Nov 15;7(1):15618. doi: 10.1038/s41598-017-15823-6.


DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient.

Emilson CE, Thompson DG, Venier LA, Porter TM, Swystun T, Chartrand D, Capell S, Hajibabaei M.

Sci Rep. 2017 Oct 6;7(1):12777. doi: 10.1038/s41598-017-13157-x. Erratum in: Sci Rep. 2018 Mar 12;8(1):4578.


Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens.

Eaton WD, Shokralla S, McGee KM, Hajibabaei M.

Genome. 2017 Oct;60(10):825-836. doi: 10.1139/gen-2015-0199. Epub 2017 Jul 21.


Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology.

Janzen DH, Burns JM, Cong Q, Hallwachs W, Dapkey T, Manjunath R, Hajibabaei M, Hebert PDN, Grishin NV.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8313-8318. doi: 10.1073/pnas.1621504114. Epub 2017 Jul 17.


Validity and Reliability Assessment of the Persian Version of Therapy-Related Symptom Checklist.

Mansouri A, Motaghedi R, Rashidian A, Ashouri A, Kagrar M, Hajibabaei M, Gholami K, Ansari S.

Iran J Med Sci. 2017 May;42(3):292-300.


Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity.

Bista I, Carvalho GR, Walsh K, Seymour M, Hajibabaei M, Lallias D, Christmas M, Creer S.

Nat Commun. 2017 Jan 18;8:14087. doi: 10.1038/ncomms14087.


Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease.

Mottawea W, Chiang CK, Mühlbauer M, Starr AE, Butcher J, Abujamel T, Deeke SA, Brandel A, Zhou H, Shokralla S, Hajibabaei M, Singleton R, Benchimol EI, Jobin C, Mack DR, Figeys D, Stintzi A.

Nat Commun. 2016 Nov 23;7:13419. doi: 10.1038/ncomms13419.


A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring.

Hajibabaei M, Baird DJ, Fahner NA, Beiko R, Golding GB.

Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702). pii: 20150330. doi: 10.1098/rstb.2015.0330. Review.


From writing to reading the encyclopedia of life.

Hebert PD, Hollingsworth PM, Hajibabaei M.

Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702). pii: 20150321. doi: 10.1098/rstb.2015.0321.


Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers.

Fahner NA, Shokralla S, Baird DJ, Hajibabaei M.

PLoS One. 2016 Jun 16;11(6):e0157505. doi: 10.1371/journal.pone.0157505. eCollection 2016.


Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas.

Porter TM, Shokralla S, Baird D, Golding GB, Hajibabaei M.

PLoS One. 2016 Jan 5;11(1):e0142759. doi: 10.1371/journal.pone.0142759. eCollection 2016.


Reply to Garner et al.

Shafer ABA, Wolf JBW, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, Österling EM, Ouborg NJ, Piccolo J, Primmer CR, Reed FA, Roumet M, Salmona J, Schwartz MK, Segelbacher G, Thaulow J, Valtonen M, Vergeer P, Weissensteiner M, Wheat CW, Vilà C, Zieliński P.

Trends Ecol Evol. 2016 Feb;31(2):83-84. doi: 10.1016/j.tree.2015.11.010. Epub 2015 Dec 17. No abstract available.


A DNA Mini-Barcoding System for Authentication of Processed Fish Products.

Shokralla S, Hellberg RS, Handy SM, King I, Hajibabaei M.

Sci Rep. 2015 Oct 30;5:15894. doi: 10.1038/srep15894.


Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing.

Gibson JF, Shokralla S, Curry C, Baird DJ, Monk WA, King I, Hajibabaei M.

PLoS One. 2015 Oct 21;10(10):e0138432. doi: 10.1371/journal.pone.0138432. eCollection 2015.


Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents.

McClenaghan B, Gibson JF, Shokralla S, Hajibabaei M.

Ecol Evol. 2015 Aug;5(15):3046-55. doi: 10.1002/ece3.1585. Epub 2015 Jul 7.


Naphthenic Acid Mixtures from Oil Sands Process-Affected Water Enhance Differentiation of Mouse Embryonic Stem Cells and Affect Development of the Heart.

Mohseni P, Hahn NA, Frank RA, Hewitt LM, Hajibabaei M, Van Der Kraak G.

Environ Sci Technol. 2015 Aug 18;49(16):10165-72. doi: 10.1021/acs.est.5b02267. Epub 2015 Aug 7.


Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform.

Shokralla S, Porter TM, Gibson JF, Dobosz R, Janzen DH, Hallwachs W, Golding GB, Hajibabaei M.

Sci Rep. 2015 Apr 17;5:9687. doi: 10.1038/srep09687.


Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.


Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics.

Gibson J, Shokralla S, Porter TM, King I, van Konynenburg S, Janzen DH, Hallwachs W, Hajibabaei M.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8007-12. doi: 10.1073/pnas.1406468111. Epub 2014 May 7.


Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.

Shokralla S, Gibson JF, Nikbakht H, Janzen DH, Hallwachs W, Hajibabaei M.

Mol Ecol Resour. 2014 Sep;14(5):892-901. doi: 10.1111/1755-0998.12236. Epub 2014 Feb 19.


Review of Apanteles sensu stricto (Hymenoptera, Braconidae, Microgastrinae) from Area de Conservación Guanacaste, northwestern Costa Rica, with keys to all described species from Mesoamerica.

Fernández-Triana JL, Whitfield JB, Rodriguez JJ, Smith MA, Janzen DH, Hallwachs WD, Hajibabaei M, Burns JM, Solis MA, Brown J, Cardinal S, Goulet H, Hebert PD.

Zookeys. 2014 Feb 24;(383):1-565. doi: 10.3897/zookeys.383.6418. eCollection 2014.


Cryptic species within cryptic moths: new species of Dunama Schaus (Notodontidae, Nystaleinae) in Costa Rica.

Chacón IA, Janzen DH, Hallwachs W, J Bolling Sullivan, Hajibabaei M.

Zookeys. 2013 Feb 6;(264):11-45. doi: 10.3897/zookeys.264.4440. Print 2013.


Influence of liquid and gas flow rates on sulfuric acid mist removal from air by packed bed tower.

Jafari MJ, Ghasemi R, Mehrabi Y, Yazdanbakhsh AR, Hajibabaei M.

Iranian J Environ Health Sci Eng. 2012 Dec 10;9(1):20. doi: 10.1186/1735-2746-9-20.


Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol.

Hajibabaei M, Spall JL, Shokralla S, van Konynenburg S.

BMC Ecol. 2012 Dec 23;12:28. doi: 10.1186/1472-6785-12-28.


The golden age of DNA metasystematics.

Hajibabaei M.

Trends Genet. 2012 Nov;28(11):535-7. doi: 10.1016/j.tig.2012.08.001. Epub 2012 Aug 27.


DNA mini-barcodes.

Hajibabaei M, McKenna C.

Methods Mol Biol. 2012;858:339-53. doi: 10.1007/978-1-61779-591-6_15.


Wolbachia and DNA barcoding insects: patterns, potential, and problems.

Smith MA, Bertrand C, Crosby K, Eveleigh ES, Fernandez-Triana J, Fisher BL, Gibbs J, Hajibabaei M, Hallwachs W, Hind K, Hrcek J, Huang DW, Janda M, Janzen DH, Li Y, Miller SE, Packer L, Quicke D, Ratnasingham S, Rodriguez J, Rougerie R, Shaw MR, Sheffield C, Stahlhut JK, Steinke D, Whitfield J, Wood M, Zhou X.

PLoS One. 2012;7(5):e36514. doi: 10.1371/journal.pone.0036514. Epub 2012 May 2.


Next-generation sequencing technologies for environmental DNA research.

Shokralla S, Spall JL, Gibson JF, Hajibabaei M.

Mol Ecol. 2012 Apr;21(8):1794-805. doi: 10.1111/j.1365-294X.2012.05538.x. Review.


Environmental DNA.

Taberlet P, Coissac E, Hajibabaei M, Rieseberg LH.

Mol Ecol. 2012 Apr;21(8):1789-93. doi: 10.1111/j.1365-294X.2012.05542.x. No abstract available.


Reading the complex skipper butterfly fauna of one tropical place.

Janzen DH, Hallwachs W, Burns JM, Hajibabaei M, Bertrand C, Hebert PD.

PLoS One. 2011;6(8):e19874. doi: 10.1371/journal.pone.0019874. Epub 2011 Aug 16.


Pyrosequencing for mini-barcoding of fresh and old museum specimens.

Shokralla S, Zhou X, Janzen DH, Hallwachs W, Landry JF, Jacobus LM, Hajibabaei M.

PLoS One. 2011;6(7):e21252. doi: 10.1371/journal.pone.0021252. Epub 2011 Jul 27.


When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths.

Wilson JJ, Rougerie R, Schonfeld J, Janzen DH, Hallwachs W, Hajibabaei M, Kitching IJ, Haxaire J, Hebert PD.

BMC Ecol. 2011 Aug 1;11:18. doi: 10.1186/1472-6785-11-18.


Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos.

Hajibabaei M, Shokralla S, Zhou X, Singer GA, Baird DJ.

PLoS One. 2011 Apr 13;6(4):e17497. doi: 10.1371/journal.pone.0017497.

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