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Items: 1 to 50 of 57

1.

Genetic analysis of resistance to stripe rust in durum wheat (Triticum turgidum L. var. durum).

Lin X, N'Diaye A, Walkowiak S, Nilsen KT, Cory AT, Haile J, Kutcher HR, Ammar K, Loladze A, Huerta-Espino J, Clarke JM, Ruan Y, Knox R, Fobert P, Sharpe AG, Pozniak CJ.

PLoS One. 2018 Sep 19;13(9):e0203283. doi: 10.1371/journal.pone.0203283. eCollection 2018.

2.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
3.

Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events.

Frantz LAF, Rudzinski A, Nugraha AMS, Evin A, Burton J, Hulme-Beaman A, Linderholm A, Barnett R, Vega R, Irving-Pease EK, Haile J, Allen R, Leus K, Shephard J, Hillyer M, Gillemot S, van den Hurk J, Ogle S, Atofanei C, Thomas MG, Johansson F, Mustari AH, Williams J, Mohamad K, Damayanti CS, Wiryadi ID, Obbles D, Mona S, Day H, Yasin M, Meker S, McGuire JA, Evans BJ, von Rintelen T, Ho SYW, Searle JB, Kitchener AC, Macdonald AA, Shaw DJ, Hall R, Galbusera P, Larson G.

Proc Biol Sci. 2018 Apr 11;285(1876). pii: 20172566. doi: 10.1098/rspb.2017.2566.

4.

Correction: Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.

N'Diaye A, Haile JK, Cory AT, Clarke FR, Clarke JM, Knox RE, Pozniak CJ.

PLoS One. 2017 Oct 24;12(10):e0187178. doi: 10.1371/journal.pone.0187178. eCollection 2017.

5.

Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.

N'Diaye A, Haile JK, Fowler DB, Ammar K, Pozniak CJ.

Front Plant Sci. 2017 Aug 23;8:1434. doi: 10.3389/fpls.2017.01434. eCollection 2017.

6.

Notes from the Field: Lead Poisoning in an Infant Associated with a Metal Bracelet - Connecticut, 2016.

Garcia P, Haile J.

MMWR Morb Mortal Wkly Rep. 2017 Sep 1;66(34):916. doi: 10.15585/mmwr.mm6634a6. No abstract available.

7.

The Childcare Center: an Untapped Opportunity to Engage and Educate Families in Healthy Behaviors.

Cloutier MM, Wiley JF, Trapp C, Haile J, Gorin AA.

J Racial Ethn Health Disparities. 2018 Apr;5(2):430-438. doi: 10.1007/s40615-017-0386-5. Epub 2017 Jun 20.

PMID:
28634874
8.

An ‛Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks.

Thomas JE, Carvalho GR, Haile J, Martin MD, Castruita JAS, Niemann J, Sinding MS, Sandoval-Velasco M, Rawlence NJ, Fuller E, Fjeldså J, Hofreiter M, Stewart JR, Gilbert MTP, Knapp M.

Genes (Basel). 2017 Jun 15;8(6). pii: E164. doi: 10.3390/genes8060164.

9.

Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.

N'Diaye A, Haile JK, Cory AT, Clarke FR, Clarke JM, Knox RE, Pozniak CJ.

PLoS One. 2017 Jan 30;12(1):e0170941. doi: 10.1371/journal.pone.0170941. eCollection 2017. Erratum in: PLoS One. 2017 Oct 24;12 (10 ):e0187178.

10.

Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell.

Grealy A, Phillips M, Miller G, Gilbert MTP, Rouillard JM, Lambert D, Bunce M, Haile J.

Mol Phylogenet Evol. 2017 Apr;109:151-163. doi: 10.1016/j.ympev.2017.01.005. Epub 2017 Jan 9.

PMID:
28089793
11.

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation.

Soares AE, Novak BJ, Haile J, Heupink TH, Fjeldså J, Gilbert MT, Poinar H, Church GM, Shapiro B.

BMC Evol Biol. 2016 Oct 26;16(1):230.

12.

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.

Sánchez Barreiro F, Vieira FG, Martin MD, Haile J, Gilbert MT, Wales N.

Mol Ecol Resour. 2017 Mar;17(2):209-220. doi: 10.1111/1755-0998.12610. Epub 2016 Nov 7.

PMID:
27762072
13.

Protein sequences bound to mineral surfaces persist into deep time.

Demarchi B, Hall S, Roncal-Herrero T, Freeman CL, Woolley J, Crisp MK, Wilson J, Fotakis A, Fischer R, Kessler BM, Rakownikow Jersie-Christensen R, Olsen JV, Haile J, Thomas J, Marean CW, Parkington J, Presslee S, Lee-Thorp J, Ditchfield P, Hamilton JF, Ward MW, Wang CM, Shaw MD, Harrison T, Domínguez-Rodrigo M, MacPhee R, Kwekason A, Ecker M, Kolska Horwitz L, Chazan M, Kröger R, Thomas-Oates J, Harding JH, Cappellini E, Penkman K, Collins MJ.

Elife. 2016 Sep 27;5. pii: e17092. doi: 10.7554/eLife.17092.

14.

Contact Zone of Asian and European Wild Boar at North West of Iran.

Khalilzadeh P, Rezaei HR, Fadakar D, Serati M, Aliabadian M, Haile J, Goshtasb H.

PLoS One. 2016 Jul 21;11(7):e0159499. doi: 10.1371/journal.pone.0159499. eCollection 2016.

15.

Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM).

Coghlan ML, Maker G, Crighton E, Haile J, Murray DC, White NE, Byard RW, Bellgard MI, Mullaney I, Trengove R, Allcock RJ, Nash C, Hoban C, Jarrett K, Edwards R, Musgrave IF, Bunce M.

Sci Rep. 2015 Dec 10;5:17475. doi: 10.1038/srep17475.

16.

The Evolution of Suidae.

Frantz L, Meijaard E, Gongora J, Haile J, Groenen MA, Larson G.

Annu Rev Anim Biosci. 2016;4:61-85. doi: 10.1146/annurev-animal-021815-111155. Epub 2015 Nov 2. Review.

PMID:
26526544
17.

Activation of SsoPK4, an Archaeal eIF2α Kinase Homolog, by Oxidized CoA.

Ray WK, Potters MB, Haile JD, Kennelly PJ.

Proteomes. 2015 May 15;3(2):89-116. doi: 10.3390/proteomes3020089.

18.

Ancient and modern environmental DNA.

Pedersen MW, Overballe-Petersen S, Ermini L, Sarkissian CD, Haile J, Hellstrom M, Spens J, Thomsen PF, Bohmann K, Cappellini E, Schnell IB, Wales NA, Carøe C, Campos PF, Schmidt AM, Gilbert MT, Hansen AJ, Orlando L, Willerslev E.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130383. doi: 10.1098/rstb.2013.0383. Review.

19.

Fifty thousand years of Arctic vegetation and megafaunal diet.

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P.

Nature. 2014 Feb 6;506(7486):47-51. doi: 10.1038/nature12921.

PMID:
24499916
20.

Metabarcoding avian diets at airports: implications for birdstrike hazard management planning.

Coghlan ML, White NE, Murray DC, Houston J, Rutherford W, Bellgard MI, Haile J, Bunce M.

Investig Genet. 2013 Dec 11;4(1):27. doi: 10.1186/2041-2223-4-27.

21.

Scrapheap challenge: a novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages.

Murray DC, Haile J, Dortch J, White NE, Haouchar D, Bellgard MI, Allcock RJ, Prideaux GJ, Bunce M.

Sci Rep. 2013 Nov 28;3:3371. doi: 10.1038/srep03371.

22.

Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed.

Burgar JM, Murray DC, Craig MD, Haile J, Houston J, Stokes V, Bunce M.

Mol Ecol. 2014 Aug;23(15):3605-17. doi: 10.1111/mec.12531. Epub 2013 Oct 31.

PMID:
24118181
23.

Molecular- and pollen-based vegetation analysis in lake sediments from central Scandinavia.

Parducci L, Matetovici I, Fontana SL, Bennett KD, Suyama Y, Haile J, Kjaer KH, Larsen NK, Drouzas AD, Willerslev E.

Mol Ecol. 2013 Jul;22(13):3511-24. doi: 10.1111/mec.12298. Epub 2013 Apr 15. Erratum in: Mol Ecol. 2014 Feb;23(4):986. Mol Ecol. 2014 Feb;23(4):986.

PMID:
23587049
24.

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost.

Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P, Haile J, Brochmann C.

Environ Microbiol. 2013 Apr;15(4):1176-89. doi: 10.1111/1462-2920.12020. Epub 2012 Nov 22. Erratum in: Environ Microbiol. 2013 Jul;15(7):2146. Haile, James [added].

PMID:
23171292
25.

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils.

Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MT, Willerslev E, Zhang G, Scofield RP, Holdaway RN, Bunce M.

Proc Biol Sci. 2012 Dec 7;279(1748):4724-33. doi: 10.1098/rspb.2012.1745. Epub 2012 Oct 10.

26.

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability.

Jørgensen T, Haile J, Möller P, Andreev A, Boessenkool S, Rasmussen M, Kienast F, Coissac E, Taberlet P, Brochmann C, Bigelow NH, Andersen K, Orlando L, Gilbert MT, Willerslev E.

Mol Ecol. 2012 Apr;21(8):1989-2003.

PMID:
22590727
27.

Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns.

Coghlan ML, Haile J, Houston J, Murray DC, White NE, Moolhuijzen P, Bellgard MI, Bunce M.

PLoS Genet. 2012;8(4):e1002657. doi: 10.1371/journal.pgen.1002657. Epub 2012 Apr 12.

28.

DNA from soil mirrors plant taxonomic and growth form diversity.

Yoccoz NG, Bråthen KA, Gielly L, Haile J, Edwards ME, Goslar T, Von Stedingk H, Brysting AK, Coissac E, Pompanon F, Sønstebø JH, Miquel C, Valentini A, De Bello F, Chave J, Thuiller W, Wincker P, Cruaud C, Gavory F, Rasmussen M, Gilbert MT, Orlando L, Brochmann C, Willerslev E, Taberlet P.

Mol Ecol. 2012 Aug;21(15):3647-55. doi: 10.1111/j.1365-294X.2012.05545.x. Epub 2012 Apr 16.

PMID:
22507540
29.

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems.

Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C.

Mol Ecol. 2012 Apr;21(8):1821-33. doi: 10.1111/j.1365-294X.2012.05537.x.

PMID:
22486821
30.

Glacial survival of boreal trees in northern Scandinavia.

Parducci L, Jørgensen T, Tollefsrud MM, Elverland E, Alm T, Fontana SL, Bennett KD, Haile J, Matetovici I, Suyama Y, Edwards ME, Andersen K, Rasmussen M, Boessenkool S, Coissac E, Brochmann C, Taberlet P, Houmark-Nielsen M, Larsen NK, Orlando L, Gilbert MT, Kjær KH, Alsos IG, Willerslev E.

Science. 2012 Mar 2;335(6072):1083-6. doi: 10.1126/science.1216043.

31.

Ancient DNA extraction from soils and sediments.

Haile J.

Methods Mol Biol. 2012;840:57-63. doi: 10.1007/978-1-61779-516-9_8.

PMID:
22237522
32.

Application of STR markers in wildlife forensic casework involving Australian black-cockatoos (Calyptorhynchus spp.).

White NE, Dawson R, Coghlan ML, Tridico SR, Mawson PR, Haile J, Bunce M.

Forensic Sci Int Genet. 2012 Sep;6(5):664-70. doi: 10.1016/j.fsigen.2011.10.003. Epub 2011 Nov 18.

PMID:
22101117
33.

Species-specific responses of Late Quaternary megafauna to climate and humans.

Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MT, Nielsen R, Ho SY, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli KP, Froese D, Zazula G, Stafford TW Jr, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbek C, Willerslev E.

Nature. 2011 Nov 2;479(7373):359-64. doi: 10.1038/nature10574.

34.

DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches.

Murray DC, Bunce M, Cannell BL, Oliver R, Houston J, White NE, Barrero RA, Bellgard MI, Haile J.

PLoS One. 2011;6(10):e25776. doi: 10.1371/journal.pone.0025776. Epub 2011 Oct 6.

35.

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA.

Boessenkool S, Epp LS, Haile J, Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C.

Mol Ecol. 2012 Apr;21(8):1806-15. doi: 10.1111/j.1365-294X.2011.05306.x. Epub 2011 Oct 12.

PMID:
21988749
36.

Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding.

Jørgensen T, Kjaer KH, Haile J, Rasmussen M, Boessenkool S, Andersen K, Coissac E, Taberlet P, Brochmann C, Orlando L, Gilbert MT, Willerslev E.

Mol Ecol. 2012 Apr;21(8):1980-8. doi: 10.1111/j.1365-294X.2011.05278.x. Epub 2011 Sep 22.

PMID:
21951625
37.

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity.

Andersen K, Bird KL, Rasmussen M, Haile J, Breuning-Madsen H, Kjaer KH, Orlando L, Gilbert MT, Willerslev E.

Mol Ecol. 2012 Apr;21(8):1966-79. doi: 10.1111/j.1365-294X.2011.05261.x. Epub 2011 Sep 14.

PMID:
21917035
38.

Egg forensics: an appraisal of DNA sequencing to assist in species identification of illegally smuggled eggs.

Coghlan ML, White NE, Parkinson L, Haile J, Spencer PB, Bunce M.

Forensic Sci Int Genet. 2012 Mar;6(2):268-73. doi: 10.1016/j.fsigen.2011.06.006. Epub 2011 Jul 7.

PMID:
21741338
39.

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate.

Sønstebø JH, Gielly L, Brysting AK, Elven R, Edwards M, Haile J, Willerslev E, Coissac E, Rioux D, Sannier J, Taberlet P, Brochmann C.

Mol Ecol Resour. 2010 Nov;10(6):1009-18. doi: 10.1111/j.1755-0998.2010.02855.x.

PMID:
21565110
40.

The activity of an ancient atypical protein kinase is stimulated by ADP-ribose in vitro.

Haile JD, Kennelly PJ.

Arch Biochem Biophys. 2011 Jul;511(1-2):56-63. doi: 10.1016/j.abb.2011.04.006. Epub 2011 Apr 19.

PMID:
21527241
41.

Fossil avian eggshell preserves ancient DNA.

Oskam CL, Haile J, McLay E, Rigby P, Allentoft ME, Olsen ME, Bengtsson C, Miller GH, Schwenninger JL, Jacomb C, Walter R, Baynes A, Dortch J, Parker-Pearson M, Gilbert MT, Holdaway RN, Willerslev E, Bunce M.

Proc Biol Sci. 2010 Jul 7;277(1690):1991-2000. doi: 10.1098/rspb.2009.2019. Epub 2010 Mar 10.

42.

Leg pain in an infant.

Haile JT, Carroll VG, Steele RW.

Clin Pediatr (Phila). 2010 Jan;49(1):78-81. doi: 10.1177/0009922809350038.

PMID:
20034948
43.

Ancient DNA reveals late survival of mammoth and horse in interior Alaska.

Haile J, Froese DG, Macphee RD, Roberts RG, Arnold LJ, Reyes AV, Rasmussen M, Nielsen R, Brook BW, Robinson S, Demuro M, Gilbert MT, Munch K, Austin JJ, Cooper A, Barnes I, Möller P, Willerslev E.

Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22352-7. doi: 10.1073/pnas.0912510106. Epub 2009 Dec 17.

44.

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography.

Bunce M, Worthy TH, Phillips MJ, Holdaway RN, Willerslev E, Haile J, Shapiro B, Scofield RP, Drummond A, Kamp PJ, Cooper A.

Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20646-51. doi: 10.1073/pnas.0906660106. Epub 2009 Nov 18.

45.

Non-destructive sampling of ancient insect DNA.

Thomsen PF, Elias S, Gilbert MT, Haile J, Munch K, Kuzmina S, Froese DG, Sher A, Holdaway RN, Willerslev E.

PLoS One. 2009;4(4):e5048. doi: 10.1371/journal.pone.0005048. Epub 2009 Apr 1.

46.

The effect of inappropriate calibration: three case studies in molecular ecology.

Ho SY, Saarma U, Barnett R, Haile J, Shapiro B.

PLoS One. 2008 Feb 20;3(2):e1615. doi: 10.1371/journal.pone.0001615.

47.

Ancient biomolecules from deep ice cores reveal a forested southern Greenland.

Willerslev E, Cappellini E, Boomsma W, Nielsen R, Hebsgaard MB, Brand TB, Hofreiter M, Bunce M, Poinar HN, Dahl-Jensen D, Johnsen S, Steffensen JP, Bennike O, Schwenninger JL, Nathan R, Armitage S, de Hoog CJ, Alfimov V, Christl M, Beer J, Muscheler R, Barker J, Sharp M, Penkman KE, Haile J, Taberlet P, Gilbert MT, Casoli A, Campani E, Collins MJ.

Science. 2007 Jul 6;317(5834):111-4.

48.

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

Haile J, Holdaway R, Oliver K, Bunce M, Gilbert MT, Nielsen R, Munch K, Ho SY, Shapiro B, Willerslev E.

Mol Biol Evol. 2007 Apr;24(4):982-9. Epub 2007 Jan 25.

PMID:
17255121
49.

Kentucky diabetes trend data reveals strong progress yet room for improvement as flu season approaches.

Haile J, Wood T.

Ky Nurse. 2006 Oct-Dec;54(4):5-6. No abstract available.

PMID:
17112139
50.

Assessing the fidelity of ancient DNA sequences amplified from nuclear genes.

Binladen J, Wiuf C, Gilbert MT, Bunce M, Barnett R, Larson G, Greenwood AD, Haile J, Ho SY, Hansen AJ, Willerslev E.

Genetics. 2006 Feb;172(2):733-41. Epub 2005 Nov 19.

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