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Items: 1 to 50 of 201

1.

Patterns of transposable element variation and clinality in Drosophila.

Adrion JR, Begun DJ, Hahn MW.

Mol Ecol. 2018 Nov 28. doi: 10.1111/mec.14961. [Epub ahead of print]

PMID:
30484926
2.

Quantifying the risk of hemiplasy in phylogenetic inference.

Guerrero RF, Hahn MW.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12787-12792. doi: 10.1073/pnas.1811268115. Epub 2018 Nov 27.

3.

Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north-south cross-section across Europe.

Hoetzinger M, Schmidt J, Pitt A, Koll U, Lang E, Hahn MW.

Int J Syst Evol Microbiol. 2018 Nov 22. doi: 10.1099/ijsem.0.003130. [Epub ahead of print]

PMID:
30465643
4.

Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana).

Rouard M, Droc G, Martin G, Sardos J, Hueber Y, Guignon V, Cenci A, Geigle B, Hibbins MS, Yahiaoui N, Baurens FC, Berry V, Hahn MW, D'Hont A, Roux N.

Genome Biol Evol. 2018 Dec 1;10(12):3129-3140. doi: 10.1093/gbe/evy227.

5.

Speciation genes are more likely to have discordant gene trees.

Wang RJ, Hahn MW.

Evol Lett. 2018 Aug 8;2(4):281-296. doi: 10.1002/evl3.77. eCollection 2018 Aug.

6.

Reproductive Longevity Predicts Mutation Rates in Primates.

Thomas GWC, Wang RJ, Puri A, Harris RA, Raveendran M, Hughes DST, Murali SC, Williams LE, Doddapaneni H, Muzny DM, Gibbs RA, Abee CR, Galinski MR, Worley KC, Rogers J, Radivojac P, Hahn MW.

Curr Biol. 2018 Oct 8;28(19):3193-3197.e5. doi: 10.1016/j.cub.2018.08.050. Epub 2018 Sep 27.

PMID:
30270182
7.

Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae.

Ayala D, Zhang S, Chateau M, Fouet C, Morlais I, Costantini C, Hahn MW, Besansky NJ.

Mol Ecol. 2018 Sep 25. doi: 10.1111/mec.14880. [Epub ahead of print]

PMID:
30252170
8.

Systems genetic analysis of inversion polymorphisms in the malaria mosquito Anopheles gambiae.

Cheng C, Tan JC, Hahn MW, Besansky NJ.

Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):E7005-E7014. doi: 10.1073/pnas.1806760115. Epub 2018 Jul 9.

PMID:
29987007
9.

A multispecies coalescent model for quantitative traits.

Mendes FK, Fuentes-González JA, Schraiber JG, Hahn MW.

Elife. 2018 Aug 14;7. pii: e36482. doi: 10.7554/eLife.36482.

10.

Multinucleotide mutations cause false inferences of lineage-specific positive selection.

Venkat A, Hahn MW, Thornton JW.

Nat Ecol Evol. 2018 Aug;2(8):1280-1288. doi: 10.1038/s41559-018-0584-5. Epub 2018 Jul 2.

PMID:
29967485
11.

Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance.

Wu M, Kostyun JL, Hahn MW, Moyle LC.

Mol Ecol. 2018 Jun 28. doi: 10.1111/mec.14780. [Epub ahead of print]

PMID:
29953708
12.

Polynucleobacter hirudinilacicola sp. nov. and Polynucleobacter campilacus sp. nov., both isolated from freshwater systems.

Hahn MW, Koll U, Schmidt J, Huymann LR, Karbon G, Lang E.

Int J Syst Evol Microbiol. 2018 Aug;68(8):2593-2601. doi: 10.1099/ijsem.0.002880. Epub 2018 Jun 25.

13.

The Neutral Theory in Light of Natural Selection.

Kern AD, Hahn MW.

Mol Biol Evol. 2018 Jun 1;35(6):1366-1371. doi: 10.1093/molbev/msy092.

PMID:
29722831
14.

Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica.

Pitt A, Schmidt J, Lang E, Whitman WB, Woyke T, Hahn MW.

Int J Syst Evol Microbiol. 2018 Jun;68(6):1975-1985. doi: 10.1099/ijsem.0.002777. Epub 2018 Apr 24.

15.

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly.

Warren WC, García-Pérez R, Xu S, Lampert KP, Chalopin D, Stöck M, Loewe L, Lu Y, Kuderna L, Minx P, Montague MJ, Tomlinson C, Hillier LW, Murphy DN, Wang J, Wang Z, Garcia CM, Thomas GCW, Volff JN, Farias F, Aken B, Walter RB, Pruitt KD, Marques-Bonet T, Hahn MW, Kneitz S, Lynch M, Schartl M.

Nat Ecol Evol. 2018 Apr;2(4):669-679. doi: 10.1038/s41559-018-0473-y. Epub 2018 Feb 12.

16.

Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host.

Palesch D, Bosinger SE, Tharp GK, Vanderford TH, Paiardini M, Chahroudi A, Johnson ZP, Kirchhoff F, Hahn BH, Norgren RB, Patel NB, Sodora DL, Dawoud RA, Stewart CB, Seepo SM, Harris RA, Liu Y, Raveendran M, Han Y, English A, Thomas GWC, Hahn MW, Pipes L, Mason CE, Muzny DM, Gibbs RA, Sauter D, Worley K, Rogers J, Silvestri G.

Nature. 2018 Jan 3;553(7686):77-81. doi: 10.1038/nature25140.

17.

Evaluating methods to visualize patterns of genetic differentiation on a landscape.

House GL, Hahn MW.

Mol Ecol Resour. 2018 May;18(3):448-460. doi: 10.1111/1755-0998.12747. Epub 2018 Jan 18.

PMID:
29282875
18.

Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.

Hahn MW, Schmidt J, Asiyo GS, Kyrpides NC, Woyke T, Whitman WB.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5087-5093. doi: 10.1099/ijsem.0.002421. Epub 2017 Oct 25.

19.

Genomic divergence and cohesion in a species of pelagic freshwater bacteria.

Hoetzinger M, Hahn MW.

BMC Genomics. 2017 Oct 16;18(1):794. doi: 10.1186/s12864-017-4199-z.

20.

Polynucleobacter aenigmaticus sp. nov. isolated from the permanently anoxic monimolimnion of a temperate meromictic lake.

Hahn MW, Koll U, Karbon G, Schmidt J, Lang E.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4646-4654. doi: 10.1099/ijsem.0.002347. Epub 2017 Oct 12.

21.

Why Concatenation Fails Near the Anomaly Zone.

Mendes FK, Hahn MW.

Syst Biol. 2018 Jan 1;67(1):158-169. doi: 10.1093/sysbio/syx063.

PMID:
28973673
22.

Polynucleobacter sphagniphilus sp. nov. a planktonic freshwater bacterium isolated from an acidic and humic freshwater habitat.

Hahn MW, Karbon G, Koll U, Schmidt J, Lang E.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3261-3267. doi: 10.1099/ijsem.0.002096. Epub 2017 Aug 22.

23.

Speciation as a sieve for ancestral polymorphism.

Guerrero RF, Hahn MW.

Mol Ecol. 2017 Oct;26(20):5362-5368. doi: 10.1111/mec.14290. Epub 2017 Sep 8.

PMID:
28792649
25.

Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers.

Broz AK, Guerrero RF, Randle AM, Baek YS, Hahn MW, Bedinger PA.

BMC Plant Biol. 2017 Apr 24;17(1):81. doi: 10.1186/s12870-017-1032-4.

26.

Gene-Tree Reconciliation with MUL-Trees to Resolve Polyploidy Events.

Gregg WCT, Ather SH, Hahn MW.

Syst Biol. 2017 Nov 1;66(6):1007-1018. doi: 10.1093/sysbio/syx044.

PMID:
28419377
27.

Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster.

Adrion JR, Song MJ, Schrider DR, Hahn MW, Schaack S.

Genome Biol Evol. 2017 May 1;9(5):1329-1340. doi: 10.1093/gbe/evx050.

28.

Genomic evidence of gene flow during reinforcement in Texas Phlox.

Roda F, Mendes FK, Hahn MW, Hopkins R.

Mol Ecol. 2017 Apr;26(8):2317-2330. doi: 10.1111/mec.14041. Epub 2017 Mar 6.

PMID:
28141906
29.

The Effects of Increasing the Number of Taxa on Inferences of Molecular Convergence.

Thomas GW, Hahn MW, Hahn Y.

Genome Biol Evol. 2017 Jan 1;9(1):213-221. doi: 10.1093/gbe/evw306.

30.

Polynucleobacter wuianus sp. nov., a free-living freshwater bacterium affiliated with the cryptic species complex PnecC.

Hahn MW, Huymann LR, Koll U, Schmidt J, Lang E, Hoetzinger M.

Int J Syst Evol Microbiol. 2017 Feb;67(2):379-385. doi: 10.1099/ijsem.0.001637. Epub 2017 Mar 16.

31.

COMPUTATIONAL APPROACHES TO UNDERSTANDING THE EVOLUTION OF MOLECULAR FUNCTION.

Bromberg Y, Hahn MW, Radivojac P.

Pac Symp Biocomput. 2017;22:1-2. doi: 10.1142/9789813207813_0001.

32.

Microdiversification of a Pelagic Polynucleobacter Species Is Mainly Driven by Acquisition of Genomic Islands from a Partially Interspecific Gene Pool.

Hoetzinger M, Schmidt J, Jezberová J, Koll U, Hahn MW.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02266-16. doi: 10.1128/AEM.02266-16. Print 2017 Feb 1.

33.

Photochemical characterization of actinorhodopsin and its functional existence in the natural host.

Nakamura S, Kikukawa T, Tamogami J, Kamiya M, Aizawa T, Hahn MW, Ihara K, Kamo N, Demura M.

Biochim Biophys Acta. 2016 Dec;1857(12):1900-1908. doi: 10.1016/j.bbabio.2016.09.006. Epub 2016 Sep 20.

34.

Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time.

Mendes FK, Hahn Y, Hahn MW.

Mol Biol Evol. 2016 Dec;33(12):3299-3307. Epub 2016 Sep 15.

PMID:
27634870
35.

AGOUTI: improving genome assembly and annotation using transcriptome data.

Zhang SV, Zhuo L, Hahn MW.

Gigascience. 2016 Jul 19;5(1):31. doi: 10.1186/s13742-016-0136-3.

36.

Molecular mechanisms of postmating prezygotic reproductive isolation uncovered by transcriptome analysis.

Pease JB, Guerrero RF, Sherman NA, Hahn MW, Moyle LC.

Mol Ecol. 2016 Jun;25(11):2592-608. doi: 10.1111/mec.13679. Epub 2016 May 30.

PMID:
27136303
38.

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes.

Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, Nolan T, Radune D, Sharakhova MV, Steele A, Timoshevskiy VA, Windbichler N, Zhang S, Hahn MW, Phillippy AM, Emrich SJ, Sharakhov IV, Tu ZJ, Besansky NJ.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):E2114-23. doi: 10.1073/pnas.1525164113. Epub 2016 Mar 29.

39.

Powerful methods for detecting introgressed regions from population genomic data.

Rosenzweig BK, Pease JB, Besansky NJ, Hahn MW.

Mol Ecol. 2016 Jun;25(11):2387-97. doi: 10.1111/mec.13610. Epub 2016 Mar 31.

40.

Complete ecological isolation and cryptic diversity in Polynucleobacter bacteria not resolved by 16S rRNA gene sequences.

Hahn MW, Jezberová J, Koll U, Saueressig-Beck T, Schmidt J.

ISME J. 2016 Jul;10(7):1642-55. doi: 10.1038/ismej.2015.237. Epub 2016 Mar 4.

41.

Gene Tree Discordance Causes Apparent Substitution Rate Variation.

Mendes FK, Hahn MW.

Syst Biol. 2016 Jul;65(4):711-21. doi: 10.1093/sysbio/syw018. Epub 2016 Feb 28.

PMID:
26927960
42.

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation.

Pease JB, Haak DC, Hahn MW, Moyle LC.

PLoS Biol. 2016 Feb 12;14(2):e1002379. doi: 10.1371/journal.pbio.1002379. eCollection 2016 Feb.

43.

Genome-wide patterns of regulatory divergence revealed by introgression lines.

Guerrero RF, Posto AL, Moyle LC, Hahn MW.

Evolution. 2016 Mar;70(3):696-706. doi: 10.1111/evo.12875. Epub 2016 Feb 24.

PMID:
26842879
44.

Parallel Evolution of Copy-Number Variation across Continents in Drosophila melanogaster.

Schrider DR, Hahn MW, Begun DJ.

Mol Biol Evol. 2016 May;33(5):1308-16. doi: 10.1093/molbev/msw014. Epub 2016 Jan 25.

45.

Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis.

Wen D, Yu Y, Hahn MW, Nakhleh L.

Mol Ecol. 2016 Jun;25(11):2361-72. doi: 10.1111/mec.13544. Epub 2016 Mar 10.

46.

How reticulated are species?

Mallet J, Besansky N, Hahn MW.

Bioessays. 2016 Feb;38(2):140-9. doi: 10.1002/bies.201500149. Epub 2015 Dec 28. Review.

47.

Role of Amine Functionality for CO2 Chemisorption on Silica.

Hahn MW, Jelic J, Berger E, Reuter K, Jentys A, Lercher JA.

J Phys Chem B. 2016 Mar 3;120(8):1988-95. doi: 10.1021/acs.jpcb.5b10012. Epub 2016 Jan 12.

PMID:
26700549
48.

Irrational exuberance for resolved species trees.

Hahn MW, Nakhleh L.

Evolution. 2016 Jan;70(1):7-17. doi: 10.1111/evo.12832. Epub 2015 Dec 17.

PMID:
26639662
49.

Proteomic Evidence for In-Frame and Out-of-Frame Alternatively Spliced Isoforms in Human and Mouse.

Ramalho RF, Li S, Radivojac P, Hahn MW.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul-Aug;15(4):1284-1289. doi: 10.1109/TCBB.2015.2480068. Epub 2015 Sep 18.

PMID:
26394435
50.

The genome of the vervet (Chlorocebus aethiops sabaeus).

Warren WC, Jasinska AJ, García-Pérez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, Hughes J, Tran N, Huang Y, Ramensky V, Choi OW, Jung YJ, Schmitt CA, Juretic N, Wasserscheid J, Turner TR, Wiseman RW, Tuscher JJ, Karl JA, Schmitz JE, Zahn R, O'Connor DH, Redmond E, Nisbett A, Jacquelin B, Müller-Trutwin MC, Brenchley JM, Dione M, Antonio M, Schroth GP, Kaplan JR, Jorgensen MJ, Thomas GW, Hahn MW, Raney BJ, Aken B, Nag R, Schmitz J, Churakov G, Noll A, Stanyon R, Webb D, Thibaud-Nissen F, Nordborg M, Marques-Bonet T, Dewar K, Weinstock GM, Wilson RK, Freimer NB.

Genome Res. 2015 Dec;25(12):1921-33. doi: 10.1101/gr.192922.115. Epub 2015 Sep 16.

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