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Items: 1 to 50 of 126

1.

Compensatory guaiacyl lignin biosynthesis at the expense of syringyl lignin in 4CL1-knockout poplar.

Tsai CJ, Xu P, Xue LJ, Hu H, Nyamdari B, Naran R, Zhou X, Goeminne G, Gao R, Gjersing E, Dahlen J, Pattathil S, Hahn MG, Davis M, Ralph J, Boerjan WA, Harding SA.

Plant Physiol. 2020 Mar 5. pii: pp.01550.2019. doi: 10.1104/pp.19.01550. [Epub ahead of print]

2.

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content.

Gallego-Giraldo L, Liu C, Pose-Albacete S, Pattathil S, Peralta AG, Young J, Westpheling J, Hahn MG, Rao X, Knox JP, De Meester B, Boerjan W, Dixon RA.

Proc Natl Acad Sci U S A. 2020 Feb 11;117(6):3281-3290. doi: 10.1073/pnas.1914422117. Epub 2020 Jan 23.

3.

Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana.

Xie H, Engle NL, Venketachalam S, Yoo CG, Barros J, Lecoultre M, Howard N, Li G, Sun L, Srivastava AC, Pattathil S, Pu Y, Hahn MG, Ragauskas AJ, Nelson RS, Dixon RA, Tschaplinski TJ, Blancaflor EB, Tang Y.

Biotechnol Biofuels. 2019 May 3;12:108. doi: 10.1186/s13068-019-1446-3. eCollection 2019.

4.

Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass.

da Costa RMF, Pattathil S, Avci U, Winters A, Hahn MG, Bosch M.

Biotechnol Biofuels. 2019 Apr 15;12:85. doi: 10.1186/s13068-019-1426-7. eCollection 2019.

5.

Glycome and Proteome Components of Golgi Membranes Are Common between Two Angiosperms with Distinct Cell-Wall Structures.

Okekeogbu IO, Pattathil S, González Fernández-Niño SM, Aryal UK, Penning BW, Lao J, Heazlewood JL, Hahn MG, McCann MC, Carpita NC.

Plant Cell. 2019 May;31(5):1094-1112. doi: 10.1105/tpc.18.00755. Epub 2019 Mar 26.

PMID:
30914498
6.

A Hybrid Approach Enabling Large-Scale Glycomic Analysis of Post-Golgi Vesicles Reveals a Transport Route for Polysaccharides.

Wilkop T, Pattathil S, Ren G, Davis DJ, Bao W, Duan D, Peralta AG, Domozych DS, Hahn MG, Drakakaki G.

Plant Cell. 2019 Mar;31(3):627-644. doi: 10.1105/tpc.18.00854. Epub 2019 Feb 13.

7.

Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage.

Pozzo T, Higdon SM, Pattathil S, Hahn MG, Bennett AB.

PLoS One. 2018 Sep 26;13(9):e0204525. doi: 10.1371/journal.pone.0204525. eCollection 2018.

8.

Elicitors and defense gene induction in plants with altered lignin compositions.

Gallego-Giraldo L, Posé S, Pattathil S, Peralta AG, Hahn MG, Ayre BG, Sunuwar J, Hernandez J, Patel M, Shah J, Rao X, Knox JP, Dixon RA.

New Phytol. 2018 Sep;219(4):1235-1251. doi: 10.1111/nph.15258. Epub 2018 Jun 27.

9.

Polyglutamine binding protein 1 (PQBP1) inhibits innate immune responses to cytosolic DNA.

Shannon JL, Murphy MS, Kantheti U, Burnett JM, Hahn MG, Dorrity TJ, Bacas CJ, Mattice EB, Corpuz KD, Barker BR.

Mol Immunol. 2018 Jul;99:182-190. doi: 10.1016/j.molimm.2018.05.014. Epub 2018 May 26.

PMID:
29807326
10.

YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance.

Sopeña-Torres S, Jordá L, Sánchez-Rodríguez C, Miedes E, Escudero V, Swami S, López G, Piślewska-Bednarek M, Lassowskat I, Lee J, Gu Y, Haigis S, Alexander D, Pattathil S, Muñoz-Barrios A, Bednarek P, Somerville S, Schulze-Lefert P, Hahn MG, Scheel D, Molina A.

New Phytol. 2018 Apr;218(2):661-680. doi: 10.1111/nph.15007. Epub 2018 Feb 16.

11.

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

Biswal AK, Atmodjo MA, Li M, Baxter HL, Yoo CG, Pu Y, Lee YC, Mazarei M, Black IM, Zhang JY, Ramanna H, Bray AL, King ZR, LaFayette PR, Pattathil S, Donohoe BS, Mohanty SS, Ryno D, Yee K, Thompson OA, Rodriguez M Jr, Dumitrache A, Natzke J, Winkeler K, Collins C, Yang X, Tan L, Sykes RW, Gjersing EL, Ziebell A, Turner GB, Decker SR, Hahn MG, Davison BH, Udvardi MK, Mielenz JR, Davis MF, Nelson RS, Parrott WA, Ragauskas AJ, Neal Stewart C Jr, Mohnen D.

Nat Biotechnol. 2018 Mar;36(3):249-257. doi: 10.1038/nbt.4067. Epub 2018 Feb 12.

PMID:
29431741
12.

Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus.

Biswal AK, Atmodjo MA, Pattathil S, Amos RA, Yang X, Winkeler K, Collins C, Mohanty SS, Ryno D, Tan L, Gelineo-Albersheim I, Hunt K, Sykes RW, Turner GB, Ziebell A, Davis MF, Decker SR, Hahn MG, Mohnen D.

Biotechnol Biofuels. 2018 Jan 17;11:9. doi: 10.1186/s13068-017-1002-y. eCollection 2018.

13.

Comparative evaluation of Populus variants total sugar release and structural features following pretreatment and digestion by two distinct biological systems.

Thomas VA, Kothari N, Bhagia S, Akinosho H, Li M, Pu Y, Yoo CG, Pattathil S, Hahn MG, Raguaskas AJ, Wyman CE, Kumar R.

Biotechnol Biofuels. 2017 Nov 30;10:292. doi: 10.1186/s13068-017-0975-x. eCollection 2017.

14.

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells.

Rao X, Shen H, Pattathil S, Hahn MG, Gelineo-Albersheim I, Mohnen D, Pu Y, Ragauskas AJ, Chen X, Chen F, Dixon RA.

Biotechnol Biofuels. 2017 Nov 30;10:266. doi: 10.1186/s13068-017-0954-2. eCollection 2017.

15.

Automated glycan assembly of galactosylated xyloglucan oligosaccharides and their recognition by plant cell wall glycan-directed antibodies.

Dallabernardina P, Ruprecht C, Smith PJ, Hahn MG, Urbanowicz BR, Pfrengle F.

Org Biomol Chem. 2017 Dec 6;15(47):9996-10000. doi: 10.1039/c7ob02605f.

16.

Cell wall changes during the formation of aerenchyma in sugarcane roots.

Leite DCC, Grandis A, Tavares EQP, Piovezani AR, Pattathil S, Avci U, Rossini A, Cambler A, De Souza AP, Hahn MG, Buckeridge MS.

Ann Bot. 2017 Nov 10;120(5):693-708. doi: 10.1093/aob/mcx050.

17.

A Synthetic Glycan Microarray Enables Epitope Mapping of Plant Cell Wall Glycan-Directed Antibodies.

Ruprecht C, Bartetzko MP, Senf D, Dallabernadina P, Boos I, Andersen MCF, Kotake T, Knox JP, Hahn MG, Clausen MH, Pfrengle F.

Plant Physiol. 2017 Nov;175(3):1094-1104. doi: 10.1104/pp.17.00737. Epub 2017 Sep 18.

18.

Glycan-Recognizing Probes as Tools.

Cummings RD, Darvill AG, Etzler ME, Hahn MG.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 48.
2017.

19.

Genomic Analysis of Clavibacter michiganensis Reveals Insight Into Virulence Strategies and Genetic Diversity of a Gram-Positive Bacterial Pathogen.

Thapa SP, Pattathil S, Hahn MG, Jacques MA, Gilbertson RL, Coaker G.

Mol Plant Microbe Interact. 2017 Oct;30(10):786-802. doi: 10.1094/MPMI-06-17-0146-R. Epub 2017 Aug 18.

PMID:
28677494
20.

Dissecting the Genetic Basis for Seed Coat Mucilage Heteroxylan Biosynthesis in Plantago ovata Using Gamma Irradiation and Infrared Spectroscopy.

Tucker MR, Ma C, Phan J, Neumann K, Shirley NJ, Hahn MG, Cozzolino D, Burton RA.

Front Plant Sci. 2017 Mar 21;8:326. doi: 10.3389/fpls.2017.00326. eCollection 2017.

21.

The elaborate route for UDP-arabinose delivery into the Golgi of plants.

Rautengarten C, Birdseye D, Pattathil S, McFarlane HE, Saez-Aguayo S, Orellana A, Persson S, Hahn MG, Scheller HV, Heazlewood JL, Ebert B.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):4261-4266. doi: 10.1073/pnas.1701894114. Epub 2017 Apr 3.

22.

DGE-seq analysis of MUR3-related Arabidopsis mutants provides insight into how dysfunctional xyloglucan affects cell elongation.

Xu Z, Wang M, Shi D, Zhou G, Niu T, Hahn MG, O'Neill MA, Kong Y.

Plant Sci. 2017 May;258:156-169. doi: 10.1016/j.plantsci.2017.01.005. Epub 2017 Jan 30.

PMID:
28330559
23.

Characterization of Plant Cell Wall Damage-Associated Molecular Patterns Regulating Immune Responses.

Bacete L, Mélida H, Pattathil S, Hahn MG, Molina A, Miedes E.

Methods Mol Biol. 2017;1578:13-23. doi: 10.1007/978-1-4939-6859-6_2.

PMID:
28220412
24.

Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling.

Walker JA, Pattathil S, Bergeman LF, Beebe ET, Deng K, Mirzai M, Northen TR, Hahn MG, Fox BG.

Biotechnol Biofuels. 2017 Feb 2;10:31. doi: 10.1186/s13068-017-0703-6. eCollection 2017.

25.

S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.

Moro CF, Gaspar M, da Silva FR, Pattathil S, Hahn MG, Salgado I, Braga MR.

New Phytol. 2017 Mar;213(4):1771-1786. doi: 10.1111/nph.14309. Epub 2016 Nov 23.

26.

A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin.

da Costa RM, Pattathil S, Avci U, Lee SJ, Hazen SP, Winters A, Hahn MG, Bosch M.

New Phytol. 2017 Mar;213(4):1710-1725. doi: 10.1111/nph.14306. Epub 2016 Nov 15.

27.

Flexible Method for Conjugation of Phenolic Lignin Model Compounds to Carrier Proteins.

Gao R, Lu F, Zhu Y, Hahn MG, Ralph J.

J Agric Food Chem. 2016 Oct 19;64(41):7782-7788. doi: 10.1021/acs.jafc.6b04273. Epub 2016 Oct 11.

28.

β-1,3-Glucans are components of brown seaweed (Phaeophyceae) cell walls.

Raimundo SC, Pattathil S, Eberhard S, Hahn MG, Popper ZA.

Protoplasma. 2017 Mar;254(2):997-1016. doi: 10.1007/s00709-016-1007-6. Epub 2016 Aug 25.

PMID:
27562783
29.

Functional Characterization of UDP-apiose Synthases from Bryophytes and Green Algae Provides Insight into the Appearance of Apiose-containing Glycans during Plant Evolution.

Smith J, Yang Y, Levy S, Adelusi OO, Hahn MG, O'Neill MA, Bar-Peled M.

J Biol Chem. 2016 Oct 7;291(41):21434-21447. Epub 2016 Aug 22.

30.

Cell Wall Composition and Candidate Biosynthesis Gene Expression During Rice Development.

Lin F, Manisseri C, Fagerström A, Peck ML, Vega-Sánchez ME, Williams B, Chiniquy DM, Saha P, Pattathil S, Conlin B, Zhu L, Hahn MG, Willats WG, Scheller HV, Ronald PC, Bartley LE.

Plant Cell Physiol. 2016 Oct;57(10):2058-2075. Epub 2016 Aug 1.

PMID:
27481893
31.

A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans.

Stonebloom S, Ebert B, Xiong G, Pattathil S, Birdseye D, Lao J, Pauly M, Hahn MG, Heazlewood JL, Scheller HV.

BMC Plant Biol. 2016 Apr 18;16:90. doi: 10.1186/s12870-016-0780-x.

32.

Biological lignocellulose solubilization: comparative evaluation of biocatalysts and enhancement via cotreatment.

Paye JM, Guseva A, Hammer SK, Gjersing E, Davis MF, Davison BH, Olstad J, Donohoe BS, Nguyen TY, Wyman CE, Pattathil S, Hahn MG, Lynd LR.

Biotechnol Biofuels. 2016 Jan 12;9:8. doi: 10.1186/s13068-015-0412-y. eCollection 2016.

33.

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis.

Srivastava AC, Chen F, Ray T, Pattathil S, Peña MJ, Avci U, Li H, Huhman DV, Backe J, Urbanowicz B, Miller JS, Bedair M, Wyman CE, Sumner LW, York WS, Hahn MG, Dixon RA, Blancaflor EB, Tang Y.

Biotechnol Biofuels. 2015 Dec 21;8:224. doi: 10.1186/s13068-015-0403-z. eCollection 2015.

34.

Immunological Approaches to Biomass Characterization and Utilization.

Pattathil S, Avci U, Zhang T, Cardenas CL, Hahn MG.

Front Bioeng Biotechnol. 2015 Oct 28;3:173. doi: 10.3389/fbioe.2015.00173. eCollection 2015. Review.

35.

Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae).

Raimundo SC, Avci U, Hopper C, Pattathil S, Hahn MG, Popper ZA.

Planta. 2016 Feb;243(2):337-54. doi: 10.1007/s00425-015-2412-3. Epub 2015 Sep 28.

PMID:
26411728
36.

Tubulin perturbation leads to unexpected cell wall modifications and affects stomatal behaviour in Populus.

Swamy PS, Hu H, Pattathil S, Maloney VJ, Xiao H, Xue LJ, Chung JD, Johnson VE, Zhu Y, Peter GF, Hahn MG, Mansfield SD, Harding SA, Tsai CJ.

J Exp Bot. 2015 Oct;66(20):6507-18. doi: 10.1093/jxb/erv383. Epub 2015 Aug 5.

37.

Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls.

Muszyński A, O'Neill MA, Ramasamy E, Pattathil S, Avci U, Peña MJ, Libault M, Hossain MS, Brechenmacher L, York WS, Barbosa RM, Hahn MG, Stacey G, Carlson RW.

Planta. 2015 Nov;242(5):1123-38. doi: 10.1007/s00425-015-2344-y. Epub 2015 Jun 12.

PMID:
26067758
38.

Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis.

Du Q, Avci U, Li S, Gallego-Giraldo L, Pattathil S, Qi L, Hahn MG, Wang H.

Plant J. 2015 Aug;83(3):388-400. doi: 10.1111/tpj.12897. Epub 2015 Jun 24.

39.

Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEXTM-pre-treated biomass.

Pattathil S, Hahn MG, Dale BE, Chundawat SP.

J Exp Bot. 2015 Jul;66(14):4279-94. doi: 10.1093/jxb/erv107. Epub 2015 Apr 23.

40.

How cell wall complexity influences saccharification efficiency in Miscanthus sinensis.

De Souza AP, Alvim Kamei CL, Torres AF, Pattathil S, Hahn MG, Trindade LM, Buckeridge MS.

J Exp Bot. 2015 Jul;66(14):4351-65. doi: 10.1093/jxb/erv183. Epub 2015 Apr 23.

41.

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock.

Biswal AK, Hao Z, Pattathil S, Yang X, Winkeler K, Collins C, Mohanty SS, Richardson EA, Gelineo-Albersheim I, Hunt K, Ryno D, Sykes RW, Turner GB, Ziebell A, Gjersing E, Lukowitz W, Davis MF, Decker SR, Hahn MG, Mohnen D.

Biotechnol Biofuels. 2015 Mar 12;8:41. doi: 10.1186/s13068-015-0218-y. eCollection 2015.

42.

Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis.

Kong Y, Peña MJ, Renna L, Avci U, Pattathil S, Tuomivaara ST, Li X, Reiter WD, Brandizzi F, Hahn MG, Darvill AG, York WS, O'Neill MA.

Plant Physiol. 2015 Apr;167(4):1296-306. doi: 10.1104/pp.114.255943. Epub 2015 Feb 11.

43.

Xylan hydrolysis in Populus trichocarpa × P. deltoides and model substrates during hydrothermal pretreatment.

Trajano HL, Pattathil S, Tomkins BA, Tschaplinski TJ, Hahn MG, Van Berkel GJ, Wyman CE.

Bioresour Technol. 2015 Mar;179:202-210. doi: 10.1016/j.biortech.2014.11.090. Epub 2014 Nov 27.

PMID:
25545089
44.

Changes in cell wall properties coincide with overexpression of extensin fusion proteins in suspension cultured tobacco cells.

Tan L, Pu Y, Pattathil S, Avci U, Qian J, Arter A, Chen L, Hahn MG, Ragauskas AJ, Kieliszewski MJ.

PLoS One. 2014 Dec 23;9(12):e115906. doi: 10.1371/journal.pone.0115906. eCollection 2014.

45.

Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellum to utilize hemicellulose and unpretreated plant material.

Izquierdo JA, Pattathil S, Guseva A, Hahn MG, Lynd LR.

Biotechnol Biofuels. 2014 Nov 18;7(1):136. doi: 10.1186/s13068-014-0136-4. eCollection 2014.

46.

Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance.

Chung D, Pattathil S, Biswal AK, Hahn MG, Mohnen D, Westpheling J.

Biotechnol Biofuels. 2014 Oct 10;7(1):147. doi: 10.1186/s13068-014-0147-1. eCollection 2014.

47.

Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose.

Socha AM, Parthasarathi R, Shi J, Pattathil S, Whyte D, Bergeron M, George A, Tran K, Stavila V, Venkatachalam S, Hahn MG, Simmons BA, Singh S.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3587-95. doi: 10.1073/pnas.1405685111. Epub 2014 Aug 18.

48.

Loss of Arabidopsis GAUT12/IRX8 causes anther indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition.

Hao Z, Avci U, Tan L, Zhu X, Glushka J, Pattathil S, Eberhard S, Sholes T, Rothstein GE, Lukowitz W, Orlando R, Hahn MG, Mohnen D.

Front Plant Sci. 2014 Jul 28;5:357. doi: 10.3389/fpls.2014.00357. eCollection 2014.

49.

Agave proves to be a low recalcitrant lignocellulosic feedstock for biofuels production on semi-arid lands.

Li H, Pattathil S, Foston MB, Ding SY, Kumar R, Gao X, Mittal A, Yarbrough JM, Himmel ME, Ragauskas AJ, Hahn MG, Wyman CE.

Biotechnol Biofuels. 2014 Apr 4;7:50. doi: 10.1186/1754-6834-7-50. eCollection 2014.

50.

Coupling alkaline pre-extraction with alkaline-oxidative post-treatment of corn stover to enhance enzymatic hydrolysis and fermentability.

Liu T, Williams DL, Pattathil S, Li M, Hahn MG, Hodge DB.

Biotechnol Biofuels. 2014 Apr 3;7(1):48. doi: 10.1186/1754-6834-7-48.

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