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Items: 1 to 50 of 69

1.

Correction: Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity.

Wibowo A, Becker C, Marconi G, Durr J, Price J, Hagmann J, Papareddy R, Putra H, Kageyama J, Becker J, Weigel D, Gutierrez-Marcos J.

Elife. 2018 Dec 21;7. pii: e44302. doi: 10.7554/eLife.44302.

2.

Contact and Noncontact Measurement of Electronic Transport in Individual 2D SnS Colloidal Semiconductor Nanocrystals.

Biacchi AJ, Le ST, Alberding BG, Hagmann JA, Pookpanratana SJ, Heilweil EJ, Richter CA, Hight Walker AR.

ACS Nano. 2018 Oct 23;12(10):10045-10060. doi: 10.1021/acsnano.8b04620. Epub 2018 Sep 28.

PMID:
30247875
3.

Quantifying atom-scale dopant movement and electrical activation in Si:P monolayers.

Wang X, Hagmann JA, Namboodiri P, Wyrick J, Li K, Murray RE, Myers A, Misenkosen F, Stewart MD, Richter CA, Silver RM.

Nanoscale. 2018 Mar 1;10(9):4488-4499. doi: 10.1039/c7nr07777g.

PMID:
29459919
4.

The rate and potential relevance of new mutations in a colonizing plant lineage.

Exposito-Alonso M, Becker C, Schuenemann VJ, Reiter E, Setzer C, Slovak R, Brachi B, Hagmann J, Grimm DG, Chen J, Busch W, Bergelson J, Ness RW, Krause J, Burbano HA, Weigel D.

PLoS Genet. 2018 Feb 12;14(2):e1007155. doi: 10.1371/journal.pgen.1007155. eCollection 2018 Feb.

5.

A Role for the F-Box Protein HAWAIIAN SKIRT in Plant microRNA Function.

Lang PLM, Christie MD, Dogan ES, Schwab R, Hagmann J, van de Weyer AL, Scacchi E, Weigel D.

Plant Physiol. 2018 Jan;176(1):730-741. doi: 10.1104/pp.17.01313. Epub 2017 Nov 7.

6.

Arabidopsis BTB/POZ protein-dependent PENETRATION3 trafficking and disease susceptibility.

Mao H, Aryal B, Langenecker T, Hagmann J, Geisler M, Grebe M.

Nat Plants. 2017 Nov;3(11):854-858. doi: 10.1038/s41477-017-0039-z. Epub 2017 Oct 30.

PMID:
29085068
7.

Interacting nanoscale magnetic superatom cluster arrays in molybdenum oxide bronzes.

Hagmann JA, Le ST, Schneemeyer LF, Stroscio JA, Besara T, Sun J, Singh DJ, Siegrist T, Seiler DG, Richter CA.

Nanoscale. 2017 Jun 14;9(23):7922-7929. doi: 10.1039/c7nr01087g.

PMID:
28569301
8.

Assessing Distribution and Variation of Genome-Wide DNA Methylation Using Short-Read Sequencing.

Hagmann J, Becker C.

Methods Mol Biol. 2017;1610:61-72. doi: 10.1007/978-1-4939-7003-2_5.

PMID:
28439857
9.

What causes mating system shifts in plants? Arabidopsis lyrata as a case study.

Mable BK, Hagmann J, Kim ST, Adam A, Kilbride E, Weigel D, Stift M.

Heredity (Edinb). 2017 Jan;118(1):110. doi: 10.1038/hdy.2016.122. Epub 2016 Dec 7. No abstract available.

10.

What causes mating system shifts in plants? Arabidopsis lyrata as a case study.

Mable BK, Hagmann J, Kim ST, Adam A, Kilbride E, Weigel D, Stift M.

Heredity (Edinb). 2017 Jan;118(1):52-63. doi: 10.1038/hdy.2016.99. Epub 2016 Nov 2. Erratum in: Heredity (Edinb). 2017 Jan;118(1):110.

11.

On the Origin of De Novo Genes in Arabidopsis thaliana Populations.

Li ZW, Chen X, Wu Q, Hagmann J, Han TS, Zou YP, Ge S, Guo YL.

Genome Biol Evol. 2016 Aug 3;8(7):2190-202. doi: 10.1093/gbe/evw164.

12.

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity.

Wibowo A, Becker C, Marconi G, Durr J, Price J, Hagmann J, Papareddy R, Putra H, Kageyama J, Becker J, Weigel D, Gutierrez-Marcos J.

Elife. 2016 May 31;5. pii: e13546. doi: 10.7554/eLife.13546. Erratum in: Elife. 2018 Dec 21;7:.

13.

Targeting Metabolic Symbiosis to Overcome Resistance to Anti-angiogenic Therapy.

Pisarsky L, Bill R, Fagiani E, Dimeloe S, Goosen RW, Hagmann J, Hess C, Christofori G.

Cell Rep. 2016 May 10;15(6):1161-74. doi: 10.1016/j.celrep.2016.04.028. Epub 2016 Apr 28.

14.

Advanced Experimental Methods for Low-temperature Magnetotransport Measurement of Novel Materials.

Hagmann JA, Le ST, Richter CA, Seiler DG.

J Vis Exp. 2016 Jan 21;(107):e53506. doi: 10.3791/53506.

15.

KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1.

Karlsson P, Christie MD, Seymour DK, Wang H, Wang X, Hagmann J, Kulcheski F, Manavella PA.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):14096-101. doi: 10.1073/pnas.1512865112. Epub 2015 Oct 28.

16.

Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M.

Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C.

PLoS Genet. 2015 Oct 22;11(10):e1005588. doi: 10.1371/journal.pgen.1005588. eCollection 2015 Oct.

17.

FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.

Kolb C, Nagel MK, Kalinowska K, Hagmann J, Ichikawa M, Anzenberger F, Alkofer A, Sato MH, Braun P, Isono E.

Plant Physiol. 2015 Apr;167(4):1361-73. doi: 10.1104/pp.114.253377. Epub 2015 Feb 19.

18.

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.

Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D.

PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan.

19.

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.

Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K.

Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23.

PMID:
27246759
20.

Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization.

Seymour DK, Koenig D, Hagmann J, Becker C, Weigel D.

PLoS Genet. 2014 Nov 13;10(11):e1004785. doi: 10.1371/journal.pgen.1004785. eCollection 2014 Nov.

21.

Trowel: a fast and accurate error correction module for Illumina sequencing reads.

Lim EC, Müller J, Hagmann J, Henz SR, Kim ST, Weigel D.

Bioinformatics. 2014 Nov 15;30(22):3264-5. doi: 10.1093/bioinformatics/btu513. Epub 2014 Jul 29.

PMID:
25075116
22.

Characterization of the low-temperature properties of a simplified protein model.

Hagmann JG, Nakagawa N, Peyrard M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jan;89(1):012705. Epub 2014 Jan 8.

PMID:
24580255
23.

Paralemmin-1 is expressed in lymphatic endothelial cells and modulates cell migration, cell maturation and tumor lymphangiogenesis.

Albrecht I, Bieri R, Leu A, Granacher P, Hagmann J, Kilimann MW, Christofori G.

Angiogenesis. 2013 Oct;16(4):795-807. doi: 10.1007/s10456-013-9356-7. Epub 2013 May 26.

PMID:
23709172
24.

Accurate indel prediction using paired-end short reads.

Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K.

BMC Genomics. 2013 Feb 27;14:132. doi: 10.1186/1471-2164-14-132.

25.

Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1.

Manavella PA, Hagmann J, Ott F, Laubinger S, Franz M, Macek B, Weigel D.

Cell. 2012 Nov 9;151(4):859-870. doi: 10.1016/j.cell.2012.09.039.

26.

Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella.

Guo YL, Todesco M, Hagmann J, Das S, Weigel D.

Genetics. 2012 Oct;192(2):729-39. doi: 10.1534/genetics.112.143958. Epub 2012 Aug 3.

27.

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.

Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D.

Nature. 2011 Sep 20;480(7376):245-9. doi: 10.1038/nature10555.

PMID:
22057020
28.

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis.

Davila JI, Arrieta-Montiel MP, Wamboldt Y, Cao J, Hagmann J, Shedge V, Xu YZ, Weigel D, Mackenzie SA.

BMC Biol. 2011 Sep 27;9:64. doi: 10.1186/1741-7007-9-64.

29.

Diet and cancer.

Wicki A, Hagmann J.

Swiss Med Wkly. 2011 Sep 9;141:w13250. doi: 10.4414/smw.2011.13250. eCollection 2011. Review.

30.

Critical examination of the inherent-structure-landscape analysis of two-state folding proteins.

Hagmann JG, Nakagawa N, Peyrard M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Dec;80(6 Pt 1):061907. Epub 2009 Dec 11.

PMID:
20365190
31.

Simultaneous alignment of short reads against multiple genomes.

Schneeberger K, Hagmann J, Ossowski S, Warthmann N, Gesing S, Kohlbacher O, Weigel D.

Genome Biol. 2009;10(9):R98. doi: 10.1186/gb-2009-10-9-r98. Epub 2009 Sep 17.

32.

Can one predict DNA transcription start sites by studying bubbles?

van Erp TS, Cuesta-Lopez S, Hagmann JG, Peyrard M.

Phys Rev Lett. 2005 Nov 18;95(21):218104. Epub 2005 Nov 17.

PMID:
16384189
33.

Focal motility determines the geometry of dendritic spines.

Roelandse M, Welman A, Wagner U, Hagmann J, Matus A.

Neuroscience. 2003;121(1):39-49.

PMID:
12946698
34.
35.

Human CLP36, a PDZ-domain and LIM-domain protein, binds to alpha-actinin-1 and associates with actin filaments and stress fibers in activated platelets and endothelial cells.

Bauer K, Kratzer M, Otte M, de Quintana KL, Hagmann J, Arnold GJ, Eckerskorn C, Lottspeich F, Siess W.

Blood. 2000 Dec 15;96(13):4236-45.

36.
37.

United States Army Rangers in Somalia: an analysis of combat casualties on an urban battlefield.

Mabry RL, Holcomb JB, Baker AM, Cloonan CC, Uhorchak JM, Perkins DE, Canfield AJ, Hagmann JH.

J Trauma. 2000 Sep;49(3):515-28; discussion 528-9.

PMID:
11003332
38.

Tactical management of urban warfare casualties in special operations.

Butler FK Jr, Hagmann JH, Richards DT.

Mil Med. 2000 Apr;165(4 Suppl):1-48. No abstract available.

PMID:
10803010
39.

Regulation of plasma membrane blebbing by the cytoskeleton.

Hagmann J, Burger MM, Dagan D.

J Cell Biochem. 1999 Jun 15;73(4):488-99.

PMID:
10733343
40.

PCTAIRE-1: characterization, subcellular distribution, and cell cycle-dependent kinase activity.

Charrasse S, Carena I, Hagmann J, Woods-Cook K, Ferrari S.

Cell Growth Differ. 1999 Sep;10(9):611-20.

41.

Telemedicine in support of peacekeeping operations overseas: an audit.

Navein J, Hagmann J, Ellis J.

Telemed J. 1997 Fall;3(3):207-14.

PMID:
10174345
42.

Recruitment of the LIM protein hic-5 to focal contacts of human platelets.

Hagmann J, Grob M, Welman A, van Willigen G, Burger MM.

J Cell Sci. 1998 Aug;111 ( Pt 15):2181-8.

43.

Portable satellite telemedicine in practice.

Navein J, Fisher A, Geiling J, Richards D, Roller J, Hagmann J.

J Telemed Telecare. 1998;4 Suppl 1:25-8.

PMID:
9640724
44.

Tactical combat casualty care in special operations.

Butler FK Jr, Hagmann J, Butler EG.

Mil Med. 1996 Aug;161 Suppl:3-16.

PMID:
8772308
45.

Use of donkeys and their draught performance in smallholder farming in Zimbabwe.

Hagmann J, Prasad VL.

Trop Anim Health Prod. 1995 Nov;27(4):231-9.

PMID:
8966767
46.

Refining prehospital physical assessment skills: a new teaching technique.

Vayer JS, Hagmann JH, Llewellyn CH.

Ann Emerg Med. 1994 Apr;23(4):786-90.

PMID:
8161048
47.

Lysis of blood platelets by human osteosarcoma cells in vitro.

Hagmann J, Dagan D, Burger MM.

Blood Cells. 1994;20(1):203-16; discussion 217-8.

PMID:
7994061
48.

Pattern formation and handedness in the cytoskeleton of human platelets.

Hagmann J.

Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3280-3.

49.
50.

Phosphorylation of vinculin in human platelets spreading on a solid surface.

Hagmann J, Burger MM.

J Cell Biochem. 1992 Nov;50(3):237-44.

PMID:
1469061

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