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Items: 1 to 50 of 73

1.

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.

De Tender C, Mesuere B, Van der Jeugt F, Haegeman A, Ruttink T, Vandecasteele B, Dawyndt P, Debode J, Kuramae EE.

Sci Rep. 2019 Jul 9;9(1):9890. doi: 10.1038/s41598-019-46106-x.

2.

Overview of diagnostic tools for Capripox virus infections.

Haegeman A, De Vleeschauwer A, De Leeuw I, Vidanović D, Šekler M, Petrović T, Demarez C, Lefebvre D, De Clercq K.

Prev Vet Med. 2019 May 28:104704. doi: 10.1016/j.prevetmed.2019.104704. [Epub ahead of print] Review.

PMID:
31196699
3.

Serological and molecular epidemiology of foot-and-mouth disease viruses in agro-pastoralist livestock herds in the kachia grazing reserve, Nigeria.

Ehizibolo DO, De Vleeschauwer AR, Haegeman A, Lefebvre D, Nwosuh CI, Umoh JU, Okolocha EC, Kazeem HM, Van Borm S, De Clercq K.

Transbound Emerg Dis. 2019 Jul;66(4):1575-1586. doi: 10.1111/tbed.13182. Epub 2019 May 15.

PMID:
30901506
4.

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne).

Veeckman E, Van Glabeke S, Haegeman A, Muylle H, van Parijs FRD, Byrne SL, Asp T, Studer B, Rohde A, Roldán-Ruiz I, Vandepoele K, Ruttink T.

DNA Res. 2019 Feb 1;26(1):1-12. doi: 10.1093/dnares/dsy033.

5.

Effectiveness and cost-benefit study to encourage herd owners in a cost sharing vaccination programme against bluetongue serotype-8 in Belgium.

Cargnel M, Van der Stede Y, Haegeman A, De Leeuw I, De Clercq K, Méroc E, Welby S.

Transbound Emerg Dis. 2019 Jan;66(1):400-411. doi: 10.1111/tbed.13034. Epub 2018 Oct 26.

PMID:
30281942
6.

Impact of Cross-Contamination Concentrations of Doxycycline Hyclate on the Microbial Ecosystem in an Ex Vivo Model of the Pig's Cecum.

De Mulder T, Rasschaert G, Van Coillie E, Van den Meersche T, Haegeman A, Ruttink T, de Wiele TV, Heyndrickx M.

Microb Drug Resist. 2019 Mar;25(2):304-315. doi: 10.1089/mdr.2018.0034. Epub 2018 Sep 19.

PMID:
30234420
7.

Reduced-Particle-Size Wheat Bran Is Efficiently Colonized by a Lactic Acid-Producing Community and Reduces Levels of Enterobacteriaceae in the Cecal Microbiota of Broilers.

Vermeulen K, Verspreet J, Courtin CM, Haesebrouck F, Baeyen S, Haegeman A, Ducatelle R, Van Immerseel F.

Appl Environ Microbiol. 2018 Oct 17;84(21). pii: e01343-18. doi: 10.1128/AEM.01343-18. Print 2018 Nov 1.

8.

Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies.

Massart S, Chiumenti M, De Jonghe K, Glover R, Haegeman A, Koloniuk I, Komínek P, Kreuze J, Kutnjak D, Lotos L, Maclot F, Maliogka V, Maree HJ, Olivier T, Olmos A, Pooggin MM, Reynard JS, Ruiz-García AB, Safarova D, Schneeberger PHH, Sela N, Turco S, Vainio EJ, Varallyay E, Verdin E, Westenberg M, Brostaux Y, Candresse T.

Phytopathology. 2019 Mar;109(3):488-497. doi: 10.1094/PHYTO-02-18-0067-R. Epub 2019 Feb 7.

9.

The Globodera pallida SPRYSEC Effector GpSPRY-414-2 That Suppresses Plant Defenses Targets a Regulatory Component of the Dynamic Microtubule Network.

Mei Y, Wright KM, Haegeman A, Bauters L, Diaz-Granados A, Goverse A, Gheysen G, Jones JT, Mantelin S.

Front Plant Sci. 2018 Jul 12;9:1019. doi: 10.3389/fpls.2018.01019. eCollection 2018.

10.

The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses.

Naalden D, Haegeman A, de Almeida-Engler J, Birhane Eshetu F, Bauters L, Gheysen G.

Mol Plant Pathol. 2018 Nov;19(11):2416-2430. doi: 10.1111/mpp.12719. Epub 2018 Sep 28.

11.

The Use of High-Throughput Sequencing for the Study and Diagnosis of Plant Viruses and Viroids in Pollen.

De Jonghe K, Haegeman A, Foucart Y, Maes M.

Methods Mol Biol. 2018;1746:131-149. doi: 10.1007/978-1-4939-7683-6_10.

PMID:
29492891
12.

Complete Genome Sequences of Five Foot-and-Mouth Disease Viruses of Serotype A Isolated from Cattle in Nigeria between 2013 and 2015.

Vandenbussche F, Mathijs E, Ularamu HG, Ehizibolo DO, Haegeman A, Lefebvre D, De Vleeschauwer AR, Van Borm S, De Clercq K.

Genome Announc. 2018 Feb 15;6(7). pii: e00039-18. doi: 10.1128/genomeA.00039-18.

13.

Complete Genome Sequences of Four Foot-and-Mouth Disease Viruses of Serotype South African Territories 1 (SAT 1), Topotype X, Isolated from Cattle in Nigeria in 2015.

Vandenbussche F, Mathijs E, Ularamu HG, Ehizibolo DO, Haegeman A, Lefebvre D, Lazarus DD, Wungak YS, De Vleeschauwer AR, Van Borm S, De Clercq K.

Genome Announc. 2017 Oct 19;5(42). pii: e01065-17. doi: 10.1128/genomeA.01065-17.

14.

Development and validation of a TaqMan probe-based real-time PCR method for the differentiation of wild type lumpy skin disease virus from vaccine virus strains.

Agianniotaki EI, Chaintoutis SC, Haegeman A, Tasioudi KE, De Leeuw I, Katsoulos PD, Sachpatzidis A, De Clercq K, Alexandropoulos T, Polizopoulou ZS, Chondrokouki ED, Dovas CI.

J Virol Methods. 2017 Nov;249:48-57. doi: 10.1016/j.jviromet.2017.08.011. Epub 2017 Aug 31.

PMID:
28837841
15.

Complete Genome Sequence of the Lumpy Skin Disease Virus Isolated from the First Reported Case in Greece in 2015.

Agianniotaki EI, Mathijs E, Vandenbussche F, Tasioudi KE, Haegeman A, Iliadou P, Chaintoutis SC, Dovas CI, Van Borm S, Chondrokouki ED, De Clercq K.

Genome Announc. 2017 Jul 20;5(29). pii: e00550-17. doi: 10.1128/genomeA.00550-17.

16.

Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea.

De Tender C, Devriese LI, Haegeman A, Maes S, Vangeyte J, Cattrijsse A, Dawyndt P, Ruttink T.

Environ Sci Technol. 2017 Jul 5;51(13):7350-7360. doi: 10.1021/acs.est.7b00697. Epub 2017 Jun 19.

PMID:
28562015
17.

Foot-and-mouth disease virus serotype SAT1 in cattle, Nigeria.

Ehizibolo DO, Haegeman A, De Vleeschauwer AR, Umoh JU, Kazeem HM, Okolocha EC, Van Borm S, De Clercq K.

Transbound Emerg Dis. 2017 Jun;64(3):683-690. doi: 10.1111/tbed.12629. Epub 2017 Feb 21.

PMID:
28224715
18.

Correction for Mathijs et al., Complete Genome Sequences of the Neethling-Like Lumpy Skin Disease Virus Strains Obtained Directly from Three Commercial Live Attenuated Vaccines.

Mathijs E, Vandenbussche F, Haegeman A, King A, Nthangeni B, Potgieter C, Maartens L, Van Borm S, De Clercq K.

Genome Announc. 2017 Feb 9;5(6). pii: e01657-16. doi: 10.1128/genomeA.01657-16. No abstract available.

19.

Detection and Molecular Characterization of Foot and Mouth Disease Viruses from Outbreaks in Some States of Northern Nigeria 2013-2015.

Ehizibolo DO, Haegeman A, De Vleeschauwer AR, Umoh JU, Kazeem HM, Okolocha EC, Van Borm S, De Clercq K.

Transbound Emerg Dis. 2017 Dec;64(6):1979-1990. doi: 10.1111/tbed.12602. Epub 2017 Jan 17.

PMID:
28097814
20.

Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection.

De Tender C, Haegeman A, Vandecasteele B, Clement L, Cremelie P, Dawyndt P, Maes M, Debode J.

Front Microbiol. 2016 Dec 22;7:2062. doi: 10.3389/fmicb.2016.02062. eCollection 2016.

21.

Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epimural.

De Mulder T, Goossens K, Peiren N, Vandaele L, Haegeman A, De Tender C, Ruttink T, de Wiele TV, De Campeneere S.

FEMS Microbiol Ecol. 2017 Mar 1;93(3). doi: 10.1093/femsec/fiw251.

PMID:
28011597
22.

Complete Genome Sequences of the Neethling-Like Lumpy Skin Disease Virus Strains Obtained Directly from Three Commercial Live Attenuated Vaccines.

Mathijs E, Vandenbussche F, Haegeman A, King A, Nthangeni B, Potgieter C, Maartens L, Van Borm S, De Clercq K.

Genome Announc. 2016 Nov 10;4(6). pii: e01255-16. doi: 10.1128/genomeA.01255-16. Erratum in: Genome Announc. 2017 Feb 9;5(6):.

23.

Replication-Deficient Particles: New Insights into the Next Generation of Bluetongue Virus Vaccines.

Celma CC, Stewart M, Wernike K, Eschbaumer M, Gonzalez-Molleda L, Breard E, Schulz C, Hoffmann B, Haegeman A, De Clercq K, Zientara S, van Rijn PA, Beer M, Roy P.

J Virol. 2016 Dec 16;91(1). pii: e01892-16. doi: 10.1128/JVI.01892-16. Print 2017 Jan 1.

24.

Complete Genome Sequence of Capripoxvirus Strain KSGP 0240 from a Commercial Live Attenuated Vaccine.

Vandenbussche F, Mathijs E, Haegeman A, Al-Majali A, Van Borm S, De Clercq K.

Genome Announc. 2016 Oct 20;4(5). pii: e01114-16. doi: 10.1128/genomeA.01114-16.

25.

Investigation of a Possible Link Between Vaccination and the 2010 Sheep Pox Epizootic in Morocco.

Haegeman A, Zro K, Sammin D, Vandenbussche F, Ennaji MM, De Clercq K.

Transbound Emerg Dis. 2016 Dec;63(6):e278-e287. doi: 10.1111/tbed.12342. Epub 2015 Mar 9.

PMID:
25753969
26.

Complete Genome Sequence of the Goatpox Virus Strain Gorgan Obtained Directly from a Commercial Live Attenuated Vaccine.

Mathijs E, Vandenbussche F, Haegeman A, Al-Majali A, De Clercq K, Van Borm S.

Genome Announc. 2016 Oct 13;4(5). pii: e01113-16. doi: 10.1128/genomeA.01113-16.

27.

Redirection of auxin flow in Arabidopsis thaliana roots after infection by root-knot nematodes.

Kyndt T, Goverse A, Haegeman A, Warmerdam S, Wanjau C, Jahani M, Engler G, de Almeida Engler J, Gheysen G.

J Exp Bot. 2016 Aug;67(15):4559-70. doi: 10.1093/jxb/erw230. Epub 2016 Jun 15.

28.

Complete Genome Sequences of Three African Foot-and-Mouth Disease Viruses from Clinical Samples Isolated in 2009 and 2010.

Van Borm S, Rosseel T, Haegeman A, Fana ME, Seoke L, Hyera J, Matlho G, Vandenbussche F, De Clercq K.

Genome Announc. 2016 May 5;4(3). pii: e00326-16. doi: 10.1128/genomeA.00326-16.

29.

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology.

Debode J, De Tender C, Soltaninejad S, Van Malderghem C, Haegeman A, Van der Linden I, Cottyn B, Heyndrickx M, Maes M.

Front Microbiol. 2016 Apr 21;7:565. doi: 10.3389/fmicb.2016.00565. eCollection 2016.

30.

Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea.

De Tender CA, Devriese LI, Haegeman A, Maes S, Ruttink T, Dawyndt P.

Environ Sci Technol. 2015 Aug 18;49(16):9629-38. doi: 10.1021/acs.est.5b01093. Epub 2015 Aug 6.

PMID:
26204244
31.

Evaluation of adaptive immune responses and heterologous protection induced by inactivated bluetongue virus vaccines.

Breard E, Belbis G, Viarouge C, Nomikou K, Haegeman A, De Clercq K, Hudelet P, Hamers C, Moreau F, Lilin T, Durand B, Mertens P, Vitour D, Sailleau C, Zientara S.

Vaccine. 2015 Jan 15;33(4):512-8. doi: 10.1016/j.vaccine.2014.11.053. Epub 2014 Dec 11.

PMID:
25500308
32.

Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle.

Załuga J, Stragier P, Baeyen S, Haegeman A, Van Vaerenbergh J, Maes M, De Vos P.

BMC Genomics. 2014 May 22;15:392. doi: 10.1186/1471-2164-15-392.

33.

Substituted 2,6-bis(benzimidazol-2-yl)pyridines: a novel chemical class of pestivirus inhibitors that targets a hot spot for inhibition of pestivirus replication in the RNA-dependent RNA polymerase.

Musiu S, Pürstinger G, Stallinger S, Vrancken R, Haegeman A, Koenen F, Leyssen P, Froeyen M, Neyts J, Paeshuyse J.

Antiviral Res. 2014 Jun;106:71-9. doi: 10.1016/j.antiviral.2014.03.010. Epub 2014 Mar 27.

PMID:
24680957
34.

Analysis of the transcriptome of Hirschmanniella oryzae to explore potential survival strategies and host-nematode interactions.

Bauters L, Haegeman A, Kyndt T, Gheysen G.

Mol Plant Pathol. 2014 May;15(4):352-63. doi: 10.1111/mpp.12098. Epub 2013 Nov 27.

35.

Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots.

Ji H, Gheysen G, Denil S, Lindsey K, Topping JF, Nahar K, Haegeman A, De Vos WH, Trooskens G, Van Criekinge W, De Meyer T, Kyndt T.

J Exp Bot. 2013 Sep;64(12):3885-98. doi: 10.1093/jxb/ert219. Epub 2013 Jul 23.

36.

Development and validation of three Capripoxvirus real-time PCRs for parallel testing.

Haegeman A, Zro K, Vandenbussche F, Demeestere L, Van Campe W, Ennaji MM, De Clercq K.

J Virol Methods. 2013 Nov;193(2):446-51. doi: 10.1016/j.jviromet.2013.07.010. Epub 2013 Jul 11.

PMID:
23850698
37.

RETRACTED ARTICLE: Molecular cloning and expression analysis of novel putative effector genes from Meloidogyne graminicola.

Rahman M, Haegeman A, Rahman BM, Gheysen G.

J Appl Genet. 2013 Nov;54(4):493. doi: 10.1007/s13353-013-0160-2. Epub 2013 Jul 12. No abstract available.

PMID:
23846215
38.

Rapid generation of replication-deficient monovalent and multivalent vaccines for bluetongue virus: protection against virulent virus challenge in cattle and sheep.

Celma CC, Boyce M, van Rijn PA, Eschbaumer M, Wernike K, Hoffmann B, Beer M, Haegeman A, De Clercq K, Roy P.

J Virol. 2013 Sep;87(17):9856-64. doi: 10.1128/JVI.01514-13. Epub 2013 Jul 3.

39.

Top 10 plant-parasitic nematodes in molecular plant pathology.

Jones JT, Haegeman A, Danchin EG, Gaur HS, Helder J, Jones MG, Kikuchi T, Manzanilla-López R, Palomares-Rius JE, Wesemael WM, Perry RN.

Mol Plant Pathol. 2013 Dec;14(9):946-61. doi: 10.1111/mpp.12057. Epub 2013 Jul 1. Review.

40.

Evaluation of classical swine fever virus antibody detection assays with an emphasis on the differentiation of infected from vaccinated animals.

Schroeder S, von Rosen T, Blome S, Loeffen W, Haegeman A, Koenen F, Uttenthal A.

Rev Sci Tech. 2012 Dec;31(3):997-1010.

41.

Intra-host variation structure of classical swine fever virus NS5B in relation to antiviral therapy.

Haegeman A, Vrancken R, Neyts J, Koenen F.

Antiviral Res. 2013 May;98(2):266-72. doi: 10.1016/j.antiviral.2013.03.005. Epub 2013 Mar 16.

PMID:
23511203
42.

Identification of candidate effector genes in the transcriptome of the rice root knot nematode Meloidogyne graminicola.

Haegeman A, Bauters L, Kyndt T, Rahman MM, Gheysen G.

Mol Plant Pathol. 2013 May;14(4):379-90. doi: 10.1111/mpp.12014. Epub 2012 Dec 28.

43.

Transcriptional reprogramming by root knot and migratory nematode infection in rice.

Kyndt T, Denil S, Haegeman A, Trooskens G, Bauters L, Van Criekinge W, De Meyer T, Gheysen G.

New Phytol. 2012 Nov;196(3):887-900. doi: 10.1111/j.1469-8137.2012.04311.x. Epub 2012 Sep 17.

44.

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.

Kyndt T, Denil S, Haegeman A, Trooskens G, De Meyer T, Van Criekinge W, Gheysen G.

J Exp Bot. 2012 Mar;63(5):2141-57. doi: 10.1093/jxb/err435. Epub 2012 Jan 2.

PMID:
22213813
45.

Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice.

Kyndt T, Nahar K, Haegeman A, De Vleesschauwer D, Höfte M, Gheysen G.

Plant Biol (Stuttg). 2012 Mar;14 Suppl 1:73-82. doi: 10.1111/j.1438-8677.2011.00524.x. Epub 2011 Dec 20.

PMID:
22188265
46.

Functional roles of effectors of plant-parasitic nematodes.

Haegeman A, Mantelin S, Jones JT, Gheysen G.

Gene. 2012 Jan 15;492(1):19-31. doi: 10.1016/j.gene.2011.10.040. Epub 2011 Oct 29. Review.

PMID:
22062000
47.

Classical swine fever virus detection: results of a real-time reverse transcription polymerase chain reaction ring trial conducted in the framework of the European network of excellence for epizootic disease diagnosis and control.

Hoffmann B, Blome S, Bonilauri P, Fernández-Piñero J, Greiser-Wilke I, Haegeman A, Isaksson M, Koenen F, LeBlanc N, Leifer I, Le Potier MF, Loeffen W, Rasmussen TB, Stadejek T, Ståhl K, Tignon M, Uttenthal A, van der Poel W, Beer M.

J Vet Diagn Invest. 2011 Sep;23(5):999-1004. doi: 10.1177/1040638711416849.

PMID:
21908363
48.

Horizontal gene transfer in nematodes: a catalyst for plant parasitism?

Haegeman A, Jones JT, Danchin EG.

Mol Plant Microbe Interact. 2011 Aug;24(8):879-87. doi: 10.1094/MPMI-03-11-0055. Review.

49.

Analysis of the transcriptome of the root lesion nematode Pratylenchus coffeae generated by 454 sequencing technology.

Haegeman A, Joseph S, Gheysen G.

Mol Biochem Parasitol. 2011 Jul-Aug;178(1-2):7-14. doi: 10.1016/j.molbiopara.2011.04.001. Epub 2011 Apr 12.

PMID:
21513748
50.

Emerging molecular knowledge on Radopholus similis, an important nematode pest of banana.

Haegeman A, Elsen A, De Waele D, Gheysen G.

Mol Plant Pathol. 2010 May;11(3):315-23. doi: 10.1111/j.1364-3703.2010.00614.x.

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