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Items: 19

1.

Integrative detection and analysis of structural variation in cancer genomes.

Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F.

Nat Genet. 2018 Sep 10. doi: 10.1038/s41588-018-0195-8. [Epub ahead of print]

PMID:
30202056
2.

Chromosome structure dynamics during the cell cycle: a structure to fit every phase.

Barrington C, Pezic D, Hadjur S.

EMBO J. 2017 Sep 15;36(18):2661-2663. doi: 10.15252/embj.201798014. Epub 2017 Sep 4. No abstract available.

3.

Cohesin biology meets the loop extrusion model.

Barrington C, Finn R, Hadjur S.

Chromosome Res. 2017 Mar;25(1):51-60. doi: 10.1007/s10577-017-9550-3. Epub 2017 Feb 16. Review.

4.

More to cohesin than meets the eye: complex diversity for fine-tuning of function.

Pezic D, Weeks SL, Hadjur S.

Curr Opin Genet Dev. 2017 Apr;43:93-100. doi: 10.1016/j.gde.2017.01.004. Epub 2017 Feb 9. Review.

PMID:
28189962
5.

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.

Uusküla-Reimand L, Hou H, Samavarchi-Tehrani P, Rudan MV, Liang M, Medina-Rivera A, Mohammed H, Schmidt D, Schwalie P, Young EJ, Reimand J, Hadjur S, Gingras AC, Wilson MD.

Genome Biol. 2016 Aug 31;17(1):182. doi: 10.1186/s13059-016-1043-8.

6.

Detecting Spatial Chromatin Organization by Chromosome Conformation Capture II: Genome-Wide Profiling by Hi-C.

Vietri Rudan M, Hadjur S, Sexton T.

Methods Mol Biol. 2017;1589:47-74. doi: 10.1007/7651_2015_261.

PMID:
26900130
7.

Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution.

Vietri Rudan M, Hadjur S.

Trends Genet. 2015 Nov;31(11):651-660. doi: 10.1016/j.tig.2015.09.004. Epub 2015 Oct 1. Review.

PMID:
26439501
8.

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture.

Vietri Rudan M, Barrington C, Henderson S, Ernst C, Odom DT, Tanay A, Hadjur S.

Cell Rep. 2015 Mar 3;10(8):1297-309. doi: 10.1016/j.celrep.2015.02.004. Epub 2015 Feb 26.

9.

Cohesin-mediated interactions organize chromosomal domain architecture.

Sofueva S, Yaffe E, Chan WC, Georgopoulou D, Vietri Rudan M, Mira-Bontenbal H, Pollard SM, Schroth GP, Tanay A, Hadjur S.

EMBO J. 2013 Dec 11;32(24):3119-29. doi: 10.1038/emboj.2013.237. Epub 2013 Nov 1.

10.

Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence.

Martynoga B, Mateo JL, Zhou B, Andersen J, Achimastou A, Urbán N, van den Berg D, Georgopoulou D, Hadjur S, Wittbrodt J, Ettwiller L, Piper M, Gronostajski RM, Guillemot F.

Genes Dev. 2013 Aug 15;27(16):1769-86. doi: 10.1101/gad.216804.113.

11.

Cohesin-mediated chromatin interactions--into the third dimension of gene regulation.

Sofueva S, Hadjur S.

Brief Funct Genomics. 2012 May;11(3):205-16. doi: 10.1093/bfgp/elr048. Epub 2012 Jan 25. Review.

PMID:
22278832
12.

Runx proteins regulate Foxp3 expression.

Bruno L, Mazzarella L, Hoogenkamp M, Hertweck A, Cobb BS, Sauer S, Hadjur S, Leleu M, Naoe Y, Telfer JC, Bonifer C, Taniuchi I, Fisher AG, Merkenschlager M.

J Exp Med. 2009 Oct 26;206(11):2329-37. doi: 10.1084/jem.20090226. Epub 2009 Oct 19.

13.

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus.

Hadjur S, Williams LM, Ryan NK, Cobb BS, Sexton T, Fraser P, Fisher AG, Merkenschlager M.

Nature. 2009 Jul 16;460(7253):410-3. doi: 10.1038/nature08079. Epub 2009 May 20.

14.

A conserved insulator that recruits CTCF and cohesin exists between the closely related but divergently regulated interleukin-3 and granulocyte-macrophage colony-stimulating factor genes.

Bowers SR, Mirabella F, Calero-Nieto FJ, Valeaux S, Hadjur S, Baxter EW, Merkenschlager M, Cockerill PN.

Mol Cell Biol. 2009 Apr;29(7):1682-93. doi: 10.1128/MCB.01411-08. Epub 2009 Jan 21.

15.

IL4 blockade of inducible regulatory T cell differentiation: the role of Th2 cells, Gata3 and PU.1.

Hadjur S, Bruno L, Hertweck A, Cobb BS, Taylor B, Fisher AG, Merkenschlager M.

Immunol Lett. 2009 Jan 29;122(1):37-43. doi: 10.1016/j.imlet.2008.11.001. Epub 2008 Nov 29.

PMID:
19046990
16.

Mll has a critical role in fetal and adult hematopoietic stem cell self-renewal.

McMahon KA, Hiew SY, Hadjur S, Veiga-Fernandes H, Menzel U, Price AJ, Kioussis D, Williams O, Brady HJ.

Cell Stem Cell. 2007 Sep 13;1(3):338-45. doi: 10.1016/j.stem.2007.07.002.

17.

Cohesins functionally associate with CTCF on mammalian chromosome arms.

Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, Gregson HC, Jarmuz A, Canzonetta C, Webster Z, Nesterova T, Cobb BS, Yokomori K, Dillon N, Aragon L, Fisher AG, Merkenschlager M.

Cell. 2008 Feb 8;132(3):422-33. doi: 10.1016/j.cell.2008.01.011. Epub 2008 Jan 31.

19.

Defective hematopoiesis and hepatic steatosis in mice with combined deficiencies of the genes encoding Fancc and Cu/Zn superoxide dismutase.

Hadjur S, Ung K, Wadsworth L, Dimmick J, Rajcan-Separovic E, Scott RW, Buchwald M, Jirik FR.

Blood. 2001 Aug 15;98(4):1003-11.

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