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Items: 48

1.

Corrigendum to "Luciferase of the Japanese syllid polychaete Odontosyllis undecimdonta" [Biochem. Biophys. Res. Commun. 2018 Jul 20;502(3):318-323].

Schultz DT, Kotlobay AA, Ziganshin R, Bannikov A, Markina NM, Chepurnyh TV, Shakhova ES, Palkina K, Haddock SHD, Yampolsky IV, Oba Y.

Biochem Biophys Res Commun. 2018 Jun 25. pii: S0006-291X(18)31434-7. doi: 10.1016/j.bbrc.2018.06.122. [Epub ahead of print] No abstract available.

PMID:
29954603
2.

Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution.

Munro C, Siebert S, Zapata F, Howison M, Damian Serrano A, Church SH, Goetz FE, Pugh PR, Haddock SHD, Dunn CW.

Mol Phylogenet Evol. 2018 Jun 22. pii: S1055-7903(18)30046-0. doi: 10.1016/j.ympev.2018.06.030. [Epub ahead of print]

3.

Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta.

Schultz DT, Kotlobay AA, Ziganshin R, Bannikov A, Markina NM, Chepurnyh TV, Shakhova ES, Palkina K, Haddock SHD, Yampolsky IV, Oba Y.

Biochem Biophys Res Commun. 2018 Jul 20;502(3):318-323. doi: 10.1016/j.bbrc.2018.05.135. Epub 2018 May 26. Erratum in: Biochem Biophys Res Commun. 2018 Jun 25;:.

PMID:
29792858
4.

Bathyal feasting: post-spawning squid as a source of carbon for deep-sea benthic communities.

Hoving HJT, Bush SL, Haddock SHD, Robison BH.

Proc Biol Sci. 2017 Dec 20;284(1869). pii: 20172096. doi: 10.1098/rspb.2017.2096.

PMID:
29263287
5.

Deep pelagic food web structure as revealed by in situ feeding observations.

Choy CA, Haddock SHD, Robison BH.

Proc Biol Sci. 2017 Dec 6;284(1868). pii: 20172116. doi: 10.1098/rspb.2017.2116.

6.

Symplectin evolved from multiple duplications in bioluminescent squid.

Francis WR, Christianson LM, Haddock SHD.

PeerJ. 2017 Jul 31;5:e3633. doi: 10.7717/peerj.3633. eCollection 2017.

7.
8.

The giant deep-sea octopus Haliphron atlanticus forages on gelatinous fauna.

Hoving HJ, Haddock SH.

Sci Rep. 2017 Mar 27;7:44952. doi: 10.1038/srep44952.

9.
10.

The rare deep-living hyperiid amphipod Megalanceoloides remipes (Barnard, 1932): complementary description and symbiosis.

Gasca R, Haddock SH.

Zootaxa. 2016 Oct 20;4178(1):138-144. doi: 10.11646/zootaxa.4178.1.7.

PMID:
27811733
11.

Phylogenomic Analyses Support Traditional Relationships within Cnidaria.

Zapata F, Goetz FE, Smith SA, Howison M, Siebert S, Church SH, Sanders SM, Ames CL, McFadden CS, France SC, Daly M, Collins AG, Haddock SH, Dunn CW, Cartwright P.

PLoS One. 2015 Oct 14;10(10):e0139068. doi: 10.1371/journal.pone.0139068. eCollection 2015.

12.
13.

A photoactivatable green-fluorescent protein from the phylum Ctenophora.

Haddock SH, Mastroianni N, Christianson LM.

Proc Biol Sci. 2015 Aug 7;282(1812):20151055. doi: 10.1098/rspb.2015.1055. No abstract available.

14.

Occurrence of Isopenicillin-N-Synthase Homologs in Bioluminescent Ctenophores and Implications for Coelenterazine Biosynthesis.

Francis WR, Shaner NC, Christianson LM, Powers ML, Haddock SH.

PLoS One. 2015 Jun 30;10(6):e0128742. doi: 10.1371/journal.pone.0128742. eCollection 2015.

15.

Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones.

Siebert S, Goetz FE, Church SH, Bhattacharyya P, Zapata F, Haddock SH, Dunn CW.

Evodevo. 2015 May 27;6:22. doi: 10.1186/s13227-015-0018-2. eCollection 2015.

16.

The hidden biology of sponges and ctenophores.

Dunn CW, Leys SP, Haddock SH.

Trends Ecol Evol. 2015 May;30(5):282-91. doi: 10.1016/j.tree.2015.03.003. Epub 2015 Mar 31. Review.

17.

Characterization of an anthraquinone fluor from the bioluminescent, pelagic polychaete Tomopteris.

Francis WR, Powers ML, Haddock SH.

Luminescence. 2014 Dec;29(8):1135-40. doi: 10.1002/bio.2671. Epub 2014 Apr 24.

18.

Best practices for scientific computing.

Wilson G, Aruliah DA, Brown CT, Chue Hong NP, Davis M, Guy RT, Haddock SH, Huff KD, Mitchell IM, Plumbley MD, Waugh B, White EP, Wilson P.

PLoS Biol. 2014 Jan;12(1):e1001745. doi: 10.1371/journal.pbio.1001745. Epub 2014 Jan 7. No abstract available.

19.

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.

Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P; NISC Comparative Sequencing Program, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD.

Science. 2013 Dec 13;342(6164):1242592. doi: 10.1126/science.1242592.

20.

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.

Francis WR, Christianson LM, Kiko R, Powers ML, Shaner NC, Haddock SH.

BMC Genomics. 2013 Mar 12;14:167. doi: 10.1186/1471-2164-14-167.

21.

Molecular phylogenetic evidence for the reorganization of the Hyperiid amphipods, a diverse group of pelagic crustaceans.

Hurt C, Haddock SH, Browne WE.

Mol Phylogenet Evol. 2013 Apr;67(1):28-37. doi: 10.1016/j.ympev.2012.12.021. Epub 2013 Jan 11.

PMID:
23319084
22.

Recurrent jellyfish blooms are a consequence of global oscillations.

Condon RH, Duarte CM, Pitt KA, Robinson KL, Lucas CH, Sutherland KR, Mianzan HW, Bogeberg M, Purcell JE, Decker MB, Uye S, Madin LP, Brodeur RD, Haddock SH, Malej A, Parry GD, Eriksen E, Quiñones J, Acha M, Harvey M, Arthur JM, Graham WM.

Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1000-5. doi: 10.1073/pnas.1210920110. Epub 2012 Dec 31.

24.
25.

Expression and characterization of the calcium-activated photoprotein from the ctenophore Bathocyroe fosteri: insights into light-sensitive photoproteins.

Powers ML, McDermott AG, Shaner NC, Haddock SH.

Biochem Biophys Res Commun. 2013 Feb 8;431(2):360-6. doi: 10.1016/j.bbrc.2012.12.026. Epub 2012 Dec 19. Erratum in: Biochem Biophys Res Commun. 2013 Jun 14;435(4):751.

26.

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes.

Schnitzler CE, Pang K, Powers ML, Reitzel AM, Ryan JF, Simmons D, Tada T, Park M, Gupta J, Brooks SY, Blakesley RW, Yokoyama S, Haddock SH, Martindale MQ, Baxevanis AD.

BMC Biol. 2012 Dec 21;10:107. doi: 10.1186/1741-7007-10-107.

27.

Light and vision in the deep-sea benthos: I. Bioluminescence at 500-1000 m depth in the Bahamian islands.

Johnsen S, Frank TM, Haddock SH, Widder EA, Messing CG.

J Exp Biol. 2012 Oct 1;215(Pt 19):3335-43. doi: 10.1242/jeb.072009.

28.

Differential gene expression in the siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next-generation sequencing workflows.

Siebert S, Robinson MD, Tintori SC, Goetz F, Helm RR, Smith SA, Shaner N, Haddock SH, Dunn CW.

PLoS One. 2011;6(7):e22953. doi: 10.1371/journal.pone.0022953. Epub 2011 Jul 29.

29.

Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA.

Bayha KM, Dawson MN, Collins AG, Barbeitos MS, Haddock SH.

Integr Comp Biol. 2010 Sep;50(3):436-55. doi: 10.1093/icb/icq074. Epub 2010 Jun 23.

PMID:
21558214
30.

Bioluminescence in the sea.

Haddock SH, Moline MA, Case JF.

Ann Rev Mar Sci. 2010;2:443-93. Review.

PMID:
21141672
32.

A photoactivatable green-fluorescent protein from the phylum Ctenophora.

Haddock SH, Mastroianni N, Christianson LM.

Proc Biol Sci. 2010 Apr 22;277(1685):1155-60. doi: 10.1098/rspb.2009.1774. Epub 2009 Dec 16. Retraction in: Haddock SH, Mastroianni N, Christianson LM. Proc Biol Sci. 2015 Aug 7;282(1812):20151055.

33.

Deep-sea, swimming worms with luminescent "bombs".

Osborn KJ, Haddock SH, Pleijel F, Madin LP, Rouse GW.

Science. 2009 Aug 21;325(5943):964. doi: 10.1126/science.1172488.

34.

Spectral diversity of fluorescent proteins from the anthozoan Corynactis californica.

Schnitzler CE, Keenan RJ, McCord R, Matysik A, Christianson LM, Haddock SH.

Mar Biotechnol (NY). 2008 May-Jun;10(3):328-42. doi: 10.1007/s10126-007-9072-7. Epub 2008 Mar 11.

PMID:
18330643
35.

Broad phylogenomic sampling improves resolution of the animal tree of life.

Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sørensen MV, Haddock SH, Schmidt-Rhaesa A, Okusu A, Kristensen RM, Wheeler WC, Martindale MQ, Giribet G.

Nature. 2008 Apr 10;452(7188):745-9. doi: 10.1038/nature06614. Epub 2008 Mar 5.

PMID:
18322464
36.

Comparative feeding behavior of planktonic ctenophores.

Haddock SH.

Integr Comp Biol. 2007 Dec;47(6):847-53. doi: 10.1093/icb/icm088. Epub 2007 Sep 18.

PMID:
21669763
37.

Phylogenetic analysis of lineage relationships among hyperiid amphipods as revealed by examination of the mitochondrial gene, cytochrome oxidase I (COI).

Browne WE, Haddock SH, Martindale MQ.

Integr Comp Biol. 2007 Dec;47(6):815-30. doi: 10.1093/icb/icm093. Epub 2007 Oct 30.

PMID:
21669761
38.

Comparative visual acuity of coleoid cephalopods.

Sweeney AM, Haddock SH, Johnsen S.

Integr Comp Biol. 2007 Dec;47(6):808-14. doi: 10.1093/icb/icm092. Epub 2007 Sep 18.

PMID:
21669760
39.

Solution to the phylogenetic enigma of Tetraplatia, a worm-shaped cnidarian.

Collins AG, Bentlage B, Matsumoto GI, Haddock SH, Osborn KJ, Schierwater B.

Biol Lett. 2006 Mar 22;2(1):120-4.

40.

Post-spawning egg care by a squid.

Seibel BA, Robison BH, Haddock SH.

Nature. 2005 Dec 15;438(7070):929.

PMID:
16355206
41.
42.

Detection of a bioluminescent milky sea from space.

Miller SD, Haddock SH, Elvidge CD, Lee TF.

Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14181-4. Epub 2005 Sep 26.

43.

Bioluminescent and red-fluorescent lures in a deep-sea siphonophore.

Haddock SH, Dunn CW, Pugh PR, Schnitzler CE.

Science. 2005 Jul 8;309(5732):263.

44.

Light production by the arm tips of the deep-sea cephalopod Vampyroteuthis infernalis.

Robison BH, Reisenbichler KR, Hunt JC, Haddock SH.

Biol Bull. 2003 Oct;205(2):102-9.

PMID:
14583508
45.

A molecular phylogenetic framework for the phylum Ctenophora using 18S rRNA genes.

Podar M, Haddock SH, Sogin ML, Harbison GR.

Mol Phylogenet Evol. 2001 Nov;21(2):218-30.

PMID:
11697917
46.

Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence.

Haddock SH, Rivers TJ, Robison BH.

Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11148-51.

47.

Low-resolution typing of HLA-DQA1 using DNA microarray.

Haddock SH, Quartararo C, Cooley P, Dao DD.

Methods Mol Biol. 2001;170:201-10. No abstract available.

PMID:
11357683
48.

Not All Ctenophores Are Bioluminescent: Pleurobrachia.

Haddock SHD, Case JF.

Biol Bull. 1995 Dec;189(3):356-362. doi: 10.2307/1542153.

PMID:
29244577

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