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Items: 1 to 50 of 56

1.

Quantifying the Power and Precision of QTL Analysis in Autopolyploids Under Bivalent and Multivalent Genetic Models.

Bourke PM, Hackett CA, Voorrips RE, Visser RGF, Maliepaard C.

G3 (Bethesda). 2019 Jul 9;9(7):2107-2122. doi: 10.1534/g3.119.400269.

2.

Genetic dissection of quantitative and qualitative traits using a minimum set of barley Recombinant Chromosome Substitution Lines.

De la Fuente Cantó C, Russell J, Hackett CA, Booth A, Dancey S, George TS, Waugh R.

BMC Plant Biol. 2018 Dec 7;18(1):340. doi: 10.1186/s12870-018-1527-7.

3.

Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening.

Hackett CA, Milne L, Smith K, Hedley P, Morris J, Simpson CG, Preedy K, Graham J.

BMC Genet. 2018 Aug 15;19(1):59. doi: 10.1186/s12863-018-0666-z.

4.

Plant exudates may stabilize or weaken soil depending on species, origin and time.

Naveed M, Brown LK, Raffan AC, George TS, Bengough AG, Roose T, Sinclair I, Koebernick N, Cooper L, Hackett CA, Hallett PD.

Eur J Soil Sci. 2017 Nov;68(6):806-816. doi: 10.1111/ejss.12487. Epub 2017 Oct 27.

5.

Quantitative trait loci associated with different polar metabolites in perennial ryegrass - providing scope for breeding towards increasing certain polar metabolites.

Foito A, Hackett CA, Stewart D, Velmurugan J, Milbourne D, Byrne SL, Barth S.

BMC Genet. 2017 Oct 10;18(1):84. doi: 10.1186/s12863-017-0552-0.

6.

Mapping Loci That Control Tuber and Foliar Symptoms Caused by PVY in Autotetraploid Potato (Solanum tuberosum L.).

da Silva WL, Ingram J, Hackett CA, Coombs JJ, Douches D, Bryan GJ, De Jong W, Gray S.

G3 (Bethesda). 2017 Nov 6;7(11):3587-3595. doi: 10.1534/g3.117.300264.

7.

Mapping and expression of genes associated with raspberry fruit ripening and softening.

Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett PD, McNicol J, Woodhead M, Graham J.

Theor Appl Genet. 2017 Mar;130(3):557-572. doi: 10.1007/s00122-016-2835-7. Epub 2016 Dec 9.

PMID:
27942774
8.
9.

Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids.

Zheng C, Voorrips RE, Jansen J, Hackett CA, Ho J, Bink MC.

Genetics. 2016 May;203(1):119-31. doi: 10.1534/genetics.115.185579. Epub 2016 Feb 26.

10.

Impact of light-exposure on the metabolite balance of transgenic potato tubers with modified glycoalkaloid biosynthesis.

Shepherd LV, Hackett CA, Alexander CJ, McNicol JW, Sungurtas JA, McRae D, McCue KF, Belknap WR, Davies HV.

Food Chem. 2016 Jun 1;200:263-73. doi: 10.1016/j.foodchem.2015.12.095. Epub 2015 Dec 31.

PMID:
26830588
11.

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.

Ribeiro A, Golicz A, Hackett CA, Milne I, Stephen G, Marshall D, Flavell AJ, Bayer M.

BMC Bioinformatics. 2015 Nov 11;16:382. doi: 10.1186/s12859-015-0801-z.

12.

Genetic Linkage Mapping of Economically Important Traits in Cultivated Tetraploid Potato (Solanum tuberosum L.).

Massa AN, Manrique-Carpintero NC, Coombs JJ, Zarka DG, Boone AE, Kirk WW, Hackett CA, Bryan GJ, Douches DS.

G3 (Bethesda). 2015 Sep 14;5(11):2357-64. doi: 10.1534/g3.115.019646.

13.

Towards an understanding of the control of 'crumbly' fruit in red raspberry.

Graham J, Smith K, McCallum S, Hedley PE, Cullen DW, Dolan A, Milne L, McNicol JW, Hackett CA.

Springerplus. 2015 May 15;4:223. doi: 10.1186/s40064-015-1010-y. eCollection 2015.

14.

Modifying glycoalkaloid content in transgenic potato--Metabolome impacts.

Shepherd LV, Hackett CA, Alexander CJ, McNicol JW, Sungurtas JA, Stewart D, McCue KF, Belknap WR, Davies HV.

Food Chem. 2015 Nov 15;187:437-43. doi: 10.1016/j.foodchem.2015.04.111. Epub 2015 Apr 24.

PMID:
25977048
15.

Impacts on the metabolome of down-regulating polyphenol oxidase in potato tubers.

Shepherd LV, Alexander CJ, Hackett CA, McRae D, Sungurtas JA, Verrall SR, Morris JA, Hedley PE, Rockhold D, Belknap W, Davies HV.

Transgenic Res. 2015 Jun;24(3):447-61. doi: 10.1007/s11248-014-9850-8. Epub 2014 Nov 23.

PMID:
25417184
16.

QTL mapping in autotetraploids using SNP dosage information.

Hackett CA, Bradshaw JE, Bryan GJ.

Theor Appl Genet. 2014 Sep;127(9):1885-904. doi: 10.1007/s00122-014-2347-2. Epub 2014 Jul 1.

17.

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley.

Liu H, Bayer M, Druka A, Russell JR, Hackett CA, Poland J, Ramsay L, Hedley PE, Waugh R.

BMC Genomics. 2014 Feb 6;15:104. doi: 10.1186/1471-2164-15-104.

18.

Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.

Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejía N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, Bryan GJ.

G3 (Bethesda). 2013 Nov 6;3(11):2031-47. doi: 10.1534/g3.113.007153.

19.

Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population.

Hackett CA, McLean K, Bryan GJ.

PLoS One. 2013 May 21;8(5):e63939. doi: 10.1371/journal.pone.0063939. Print 2013.

20.

Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry.

Dobson P, Graham J, Stewart D, Brennan R, Hackett CA, McDougall GJ.

J Agric Food Chem. 2012 May 30;60(21):5360-6. doi: 10.1021/jf3005178. Epub 2012 May 18.

PMID:
22583495
21.

Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum).

Russell JR, Bayer M, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM.

BMC Plant Biol. 2011 Oct 28;11:147. doi: 10.1186/1471-2229-11-147.

22.

Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry.

Graham J, Hackett CA, Smith K, Woodhead M, MacKenzie K, Tierney I, Cooke D, Bayer M, Jennings N.

Theor Appl Genet. 2011 Aug;123(4):585-601. doi: 10.1007/s00122-011-1609-5. Epub 2011 May 15.

PMID:
21573956
23.

Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.).

Hedley PE, Russell JR, Jorgensen L, Gordon S, Morris JA, Hackett CA, Cardle L, Brennan R.

BMC Plant Biol. 2010 Sep 14;10:202. doi: 10.1186/1471-2229-10-202.

24.

Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models.

Hackett CA, Russell J, Jorgensen L, Gordon SL, Brennan RM.

Theor Appl Genet. 2010 Nov;121(8):1483-8. doi: 10.1007/s00122-010-1404-8. Epub 2010 Jul 23.

PMID:
20652803
25.

Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry.

McCallum S, Woodhead M, Hackett CA, Kassim A, Paterson A, Graham J.

Theor Appl Genet. 2010 Aug;121(4):611-27. doi: 10.1007/s00122-010-1334-5. Epub 2010 Apr 24.

PMID:
20419285
26.

An eQTL analysis of partial resistance to Puccinia hordei in barley.

Chen X, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I, Morris J, Ramsay L, Marshall D, Cardle L, Waugh R.

PLoS One. 2010 Jan 6;5(1):e8598. doi: 10.1371/journal.pone.0008598.

27.

Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin.

Comadran J, Thomas WT, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A, Ouabbou H, Bort J, Romagosa I, Hackett CA, Russell JR.

Theor Appl Genet. 2009 Jun;119(1):175-87. doi: 10.1007/s00122-009-1027-0. Epub 2009 May 5.

PMID:
19415228
28.

Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit.

Graham J, Hackett CA, Smith K, Woodhead M, Hein I, McCallum S.

Theor Appl Genet. 2009 Apr;118(6):1143-55. doi: 10.1007/s00122-009-0969-6. Epub 2009 Jan 31.

PMID:
19183857
29.

TetraploidMap for Windows: linkage map construction and QTL mapping in autotetraploid species.

Hackett CA, Milne I, Bradshaw JE, Luo Z.

J Hered. 2007 Nov-Dec;98(7):727-9. Epub 2007 Oct 26.

PMID:
17965198
30.

QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum).

Bradshaw JE, Hackett CA, Pande B, Waugh R, Bryan GJ.

Theor Appl Genet. 2008 Jan;116(2):193-211. Epub 2007 Oct 16.

PMID:
17938877
31.

Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp. tuberosum).

Bradshaw JE, Hackett CA, Lowe R, McLean K, Stewart HE, Tierney I, Vilaro MD, Bryan GJ.

Theor Appl Genet. 2006 Sep;113(5):943-51. Epub 2006 Jul 15.

PMID:
16845519
32.

Soil microbial and faunal community responses to bt maize and insecticide in two soils.

Griffiths BS, Caul S, Thompson J, Birch AN, Scrimgeour C, Cortet J, Foggo A, Hackett CA, Krogh PH.

J Environ Qual. 2006 Apr 3;35(3):734-41. Print 2006 May-Jun.

PMID:
16585615
33.

Mapping gene H controlling cane pubescence in raspberry and its association with resistance to cane botrytis and spur blight, rust and cane spot.

Graham J, Smith K, Tierney I, MacKenzie K, Hackett CA.

Theor Appl Genet. 2006 Mar;112(5):818-31. Epub 2006 Jan 28.

PMID:
16514550
35.

TetraploidMap: construction of a linkage map in autotetraploid species.

Hackett CA, Luo ZW.

J Hered. 2003 Jul-Aug;94(4):358-9.

PMID:
12920109
36.

Constructing linkage maps in autotetraploid species using simulated annealing.

Hackett CA, Pande B, Bryan GJ.

Theor Appl Genet. 2003 Apr;106(6):1107-15. Epub 2003 Feb 8.

PMID:
12671760
38.

Statistical methods for QTL mapping in cereals.

Hackett CA.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):585-99.

PMID:
11999836
39.

Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography and flowering time.

Ivandic V, Hackett CA, Nevo E, Keith R, Thomas WT, Forster BP.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):511-27.

PMID:
11999832
40.

Interval mapping of quantitative trait loci in autotetraploid species.

Hackett CA, Bradshaw JE, McNicol JW.

Genetics. 2001 Dec;159(4):1819-32.

41.
42.

Approximate standard errors in semiparametric models.

Durban M, Hackett CA, Currie ID.

Biometrics. 1999 Sep;55(3):699-703.

PMID:
11314995
43.

Multi-trait QTL mapping in barley using multivariate regression.

Hackett CA, Meyer RC, Thomas WT.

Genet Res. 2001 Feb;77(1):95-106.

PMID:
11279835
44.

Construction of a genetic linkage map in tetraploid species using molecular markers.

Luo ZW, Hackett CA, Bradshaw JE, McNicol JW, Milbourne D.

Genetics. 2001 Mar;157(3):1369-85.

45.

Phenotypic responses of wild barley to experimentally imposed water stress.

Ivandic V, Hackett CA, Zhang ZJ, Staub JE, Nevo E, Thomas WT, Forster BP.

J Exp Bot. 2000 Dec;51(353):2021-9.

PMID:
11141176
46.

Construction of a genetic linkage map for Camellia sinensis (tea).

Hackett CA, Wachira FN, Paul S, Powell W, Waugh R.

Heredity (Edinb). 2000 Oct;85 Pt 4:346-55.

47.

Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans).

Meyer RC, Milbourne D, Hackett CA, Bradshaw JE, McNichol JW, Waugh R.

Mol Gen Genet. 1998 Aug;259(2):150-60.

PMID:
9747706
48.

AFLP variation in wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography.

Pakniyat H, Powell W, Baird E, Handley LL, Robinson D, Scrimgeour CM, Hackett CA, Forster BP, Nevo E, Caligari PD.

Genome. 1997 Jun;40(3):332-41.

PMID:
18464832
49.

On predicting improvement and relapse in generalized anxiety disorder following psychotherapy.

Durham RC, Allan T, Hackett CA.

Br J Clin Psychol. 1997 Feb;36(1):101-19.

PMID:
9051282
50.

Genetic mapping of quantitative trait loci for traits with ordinal distributions.

Hackett CA, Weller JI.

Biometrics. 1995 Dec;51(4):1252-63.

PMID:
8589221

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