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Items: 1 to 50 of 149

1.

A probabilistic network model for structural transitions in biomolecules.

Habeck M, Nguyen T.

Proteins. 2018 Jun;86(6):634-643. doi: 10.1002/prot.25490. Epub 2018 Mar 24.

PMID:
29524249
2.

Data-driven coarse graining of large biomolecular structures.

Chen YL, Habeck M.

PLoS One. 2017 Aug 17;12(8):e0183057. doi: 10.1371/journal.pone.0183057. eCollection 2017.

3.

An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins.

Michalik M, Orwick-Rydmark M, Habeck M, Alva V, Arnold T, Linke D.

PLoS One. 2017 Aug 3;12(8):e0182016. doi: 10.1371/journal.pone.0182016. eCollection 2017.

4.

Bayesian Modeling of Biomolecular Assemblies with Cryo-EM Maps.

Habeck M.

Front Mol Biosci. 2017 Mar 22;4:15. doi: 10.3389/fmolb.2017.00015. eCollection 2017.

5.

Specific phospholipid binding to Na,K-ATPase at two distinct sites.

Habeck M, Kapri-Pardes E, Sharon M, Karlish SJ.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2904-2909. doi: 10.1073/pnas.1620799114. Epub 2017 Feb 27.

6.

Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.

Carstens S, Nilges M, Habeck M.

PLoS Comput Biol. 2016 Dec 27;12(12):e1005292. doi: 10.1371/journal.pcbi.1005292. eCollection 2016 Dec.

7.

Selective Assembly of Na,K-ATPase α2β2 Heterodimers in the Heart: DISTINCT FUNCTIONAL PROPERTIES AND ISOFORM-SELECTIVE INHIBITORS.

Habeck M, Tokhtaeva E, Nadav Y, Ben Zeev E, Ferris SP, Kaufman RJ, Bab-Dinitz E, Kaplan JH, Dada LA, Farfel Z, Tal DM, Katz A, Sachs G, Vagin O, Karlish SJ.

J Biol Chem. 2016 Oct 28;291(44):23159-23174. Epub 2016 Sep 13.

8.

A probabilistic model for detecting rigid domains in protein structures.

Nguyen T, Habeck M.

Bioinformatics. 2016 Sep 1;32(17):i710-i717. doi: 10.1093/bioinformatics/btw442.

PMID:
27587693
9.

The adaptor protein CIN85 assembles intracellular signaling clusters for B cell activation.

Kühn J, Wong LE, Pirkuliyeva S, Schulz K, Schwiegk C, Fünfgeld KG, Keppler S, Batista FD, Urlaub H, Habeck M, Becker S, Griesinger C, Wienands J.

Sci Signal. 2016 Jun 28;9(434):ra66. doi: 10.1126/scisignal.aad6275.

PMID:
27353366
10.

[Approval procedures for clinical trials in the field of radiation oncology].

Simon M, Habeck M, Büttner D, Habeck U, Nölling T, Krause M, Brix G, Willich N, Wenz F, Schmidberger H, Debus J, Baumann M.

Strahlenther Onkol. 2015 Dec;191(12):909-20. doi: 10.1007/s00066-015-0914-3. German.

PMID:
26501140
11.

Digoxin derivatives with selectivity for the α2β3 isoform of Na,K-ATPase potently reduce intraocular pressure.

Katz A, Tal DM, Heller D, Habeck M, Ben Zeev E, Rabah B, Bar Kana Y, Marcovich AL, Karlish SJ.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13723-8. doi: 10.1073/pnas.1514569112. Epub 2015 Oct 19.

12.

Molecular Mechanisms and Kinetic Effects of FXYD1 and Phosphomimetic Mutants on Purified Human Na,K-ATPase.

Mishra NK, Habeck M, Kirchner C, Haviv H, Peleg Y, Eisenstein M, Apell HJ, Karlish SJ.

J Biol Chem. 2015 Nov 27;290(48):28746-59. doi: 10.1074/jbc.M115.687913. Epub 2015 Oct 1.

13.

Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane.

Shahid SA, Nagaraj M, Chauhan N, Franks TW, Bardiaux B, Habeck M, Orwick-Rydmark M, Linke D, van Rossum BJ.

Angew Chem Int Ed Engl. 2015 Oct 19;54(43):12602-6. doi: 10.1002/anie.201505506. Epub 2015 Aug 31.

PMID:
26332158
14.

Cooperative binding: a multiple personality.

Martini JW, Diambra L, Habeck M.

J Math Biol. 2016 Jun;72(7):1747-74. doi: 10.1007/s00285-015-0922-z. Epub 2015 Aug 29.

PMID:
26319983
15.

Hybrid Structure of the Type 1 Pilus of Uropathogenic Escherichia coli.

Habenstein B, Loquet A, Hwang S, Giller K, Vasa SK, Becker S, Habeck M, Lange A.

Angew Chem Int Ed Engl. 2015 Sep 28;54(40):11691-5. doi: 10.1002/anie.201505065. Epub 2015 Aug 12.

PMID:
26267365
16.

General and specific lipid-protein interactions in Na,K-ATPase.

Cornelius F, Habeck M, Kanai R, Toyoshima C, Karlish SJ.

Biochim Biophys Acta. 2015 Sep;1848(9):1729-43. doi: 10.1016/j.bbamem.2015.03.012. Epub 2015 Mar 16. Review.

17.

Bayesian inference of initial models in cryo-electron microscopy using pseudo-atoms.

Joubert P, Habeck M.

Biophys J. 2015 Mar 10;108(5):1165-75. doi: 10.1016/j.bpj.2014.12.054.

18.

Comparison of the kinetics of different Markov models for ligand binding under varying conditions.

Martini JW, Habeck M.

J Chem Phys. 2015 Mar 7;142(9):094104. doi: 10.1063/1.4908531.

PMID:
25747058
19.

Structure and evolution of N-domains in AAA metalloproteases.

Scharfenberg F, Serek-Heuberger J, Coles M, Hartmann MD, Habeck M, Martin J, Lupas AN, Alva V.

J Mol Biol. 2015 Feb 27;427(4):910-923. doi: 10.1016/j.jmb.2014.12.024. Epub 2015 Jan 8.

20.

Stimulation, inhibition, or stabilization of Na,K-ATPase caused by specific lipid interactions at distinct sites.

Habeck M, Haviv H, Katz A, Kapri-Pardes E, Ayciriex S, Shevchenko A, Ogawa H, Toyoshima C, Karlish SJ.

J Biol Chem. 2015 Feb 20;290(8):4829-42. doi: 10.1074/jbc.M114.611384. Epub 2014 Dec 22.

21.

Kinetics or equilibrium? A commentary on a recent simulation study of semiochemical dose-response curves of insect olfactory sensing.

Martini JW, Habeck M.

J Chem Ecol. 2014 Dec;40(11-12):1163-4. doi: 10.1007/s10886-014-0526-x. No abstract available.

PMID:
25475785
22.

Bayesian approach to inverse statistical mechanics.

Habeck M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 May;89(5):052113. Epub 2014 May 9.

PMID:
25353745
23.

Bayesian weighting of statistical potentials in NMR structure calculation.

Mechelke M, Habeck M.

PLoS One. 2014 Jun 23;9(6):e100197. doi: 10.1371/journal.pone.0100197. eCollection 2014.

24.

Autonomous reconstruction and segmentation of tomographic data.

Wollgarten M, Habeck M.

Micron. 2014 Aug;63:20-7. doi: 10.1016/j.micron.2014.02.005. Epub 2014 Feb 19.

PMID:
24613674
25.

Estimation of Interaction Potentials through the Configurational Temperature Formalism.

Mechelke M, Habeck M.

J Chem Theory Comput. 2013 Dec 10;9(12):5685-92. doi: 10.1021/ct400580p. Epub 2013 Nov 22.

PMID:
26592299
26.

Confidence-guided local structure prediction with HHfrag.

Kalev I, Habeck M.

PLoS One. 2013 Oct 16;8(10):e76512. doi: 10.1371/journal.pone.0076512. eCollection 2013.

27.

Structures of the human and Drosophila 80S ribosome.

Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R.

Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.

PMID:
23636399
28.

Neutral phospholipids stimulate Na,K-ATPase activity: a specific lipid-protein interaction.

Haviv H, Habeck M, Kanai R, Toyoshima C, Karlish SJ.

J Biol Chem. 2013 Apr 5;288(14):10073-81. doi: 10.1074/jbc.M112.446997. Epub 2013 Feb 21.

29.

Calibration of Boltzmann distribution priors in Bayesian data analysis.

Mechelke M, Habeck M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Dec;86(6 Pt 2):066705. Epub 2012 Dec 19.

PMID:
23368076
30.

A probabilistic model for secondary structure prediction from protein chemical shifts.

Mechelke M, Habeck M.

Proteins. 2013 Jun;81(6):984-93. doi: 10.1002/prot.24249. Epub 2013 Feb 27.

PMID:
23292699
31.

Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Shahid SA, Bardiaux B, Franks WT, Krabben L, Habeck M, van Rossum BJ, Linke D.

Nat Methods. 2012 Dec;9(12):1212-7. doi: 10.1038/nmeth.2248. Epub 2012 Nov 11.

PMID:
23142870
32.

Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?

Paramasivam N, Habeck M, Linke D.

BMC Genomics. 2012 Sep 26;13:510. doi: 10.1186/1471-2164-13-510.

33.

Bayesian estimation of free energies from equilibrium simulations.

Habeck M.

Phys Rev Lett. 2012 Sep 7;109(10):100601. Epub 2012 Sep 4.

PMID:
23005272
34.

CSB: a Python framework for structural bioinformatics.

Kalev I, Mechelke M, Kopec KO, Holder T, Carstens S, Habeck M.

Bioinformatics. 2012 Nov 15;28(22):2996-7. doi: 10.1093/bioinformatics/bts538. Epub 2012 Aug 31.

PMID:
22942023
35.

[Changes in the "medical research" licensing procedure under the German Radiation Protection Ordinance].

Habeck M, Epsch R, Minkov V, Langer M, Griebel J, Brix G.

Rofo. 2012 Jun;184(6):513-9. doi: 10.1055/s-0031-1299120. Epub 2012 Feb 13. Review. German.

PMID:
22331822
36.

Inferential NMR/X-ray-based structure determination of a dibenzo[a,d]cycloheptenone inhibitor-p38α MAP kinase complex in solution.

Honndorf VS, Coudevylle N, Laufer S, Becker S, Griesinger C, Habeck M.

Angew Chem Int Ed Engl. 2012 Mar 5;51(10):2359-62. doi: 10.1002/anie.201105241. Epub 2012 Jan 24. No abstract available.

PMID:
22275118
37.

Structure-activity analysis of the dermcidin-derived peptide DCD-1L, an anionic antimicrobial peptide present in human sweat.

Paulmann M, Arnold T, Linke D, Özdirekcan S, Kopp A, Gutsmann T, Kalbacher H, Wanke I, Schuenemann VJ, Habeck M, Bürck J, Ulrich AS, Schittek B.

J Biol Chem. 2012 Mar 9;287(11):8434-43. doi: 10.1074/jbc.M111.332270. Epub 2012 Jan 18.

38.

HHfrag: HMM-based fragment detection using HHpred.

Kalev I, Habeck M.

Bioinformatics. 2011 Nov 15;27(22):3110-6. doi: 10.1093/bioinformatics/btr541. Epub 2011 Sep 28.

PMID:
21965821
39.

A blind deconvolution approach for improving the resolution of cryo-EM density maps.

Hirsch M, Schölkopf B, Habeck M.

J Comput Biol. 2011 Mar;18(3):335-46. doi: 10.1089/cmb.2010.0264.

PMID:
21385038
40.

Combining computational modeling with sparse and low-resolution data.

Habeck M, Nilges M.

J Struct Biol. 2011 Mar;173(3):419. doi: 10.1016/j.jsb.2011.01.002. Epub 2011 Jan 14. No abstract available.

PMID:
21238592
41.

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53. doi: 10.1073/pnas.1009999107. Epub 2010 Oct 27.

42.

Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.

Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19754-9. doi: 10.1073/pnas.1010005107. Epub 2010 Oct 25.

43.

Statistical mechanics analysis of sparse data.

Habeck M.

J Struct Biol. 2011 Mar;173(3):541-8. doi: 10.1016/j.jsb.2010.09.016. Epub 2010 Sep 30.

PMID:
20869444
44.

Robust probabilistic superposition and comparison of protein structures.

Mechelke M, Habeck M.

BMC Bioinformatics. 2010 Jul 1;11:363. doi: 10.1186/1471-2105-11-363.

45.

2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134: purification of dihydroxypropanesulfonate 3-dehydrogenase.

Mayer J, Huhn T, Habeck M, Denger K, Hollemeyer K, Cook AM.

Microbiology. 2010 May;156(Pt 5):1556-64. doi: 10.1099/mic.0.037580-0. Epub 2010 Feb 11.

PMID:
20150239
46.

Investigation of electrogenic partial reactions in detergent-solubilized Na,K-ATPase.

Habeck M, Cirri E, Katz A, Karlish SJ, Apell HJ.

Biochemistry. 2009 Sep 29;48(38):9147-55. doi: 10.1021/bi901148k.

PMID:
19708718
47.

The GD box: a widespread noncontiguous supersecondary structural element.

Alva V, Dunin-Horkawicz S, Habeck M, Coles M, Lupas AN.

Protein Sci. 2009 Sep;18(9):1961-6. doi: 10.1002/pro.207.

48.

Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases.

Djuranovic S, Hartmann MD, Habeck M, Ursinus A, Zwickl P, Martin J, Lupas AN, Zeth K.

Mol Cell. 2009 Jun 12;34(5):580-90. doi: 10.1016/j.molcel.2009.04.030. Epub 2009 May 28.

49.

Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA.

Bardiaux B, Bernard A, Rieping W, Habeck M, Malliavin TE, Nilges M.

Proteins. 2009 May 15;75(3):569-85. doi: 10.1002/prot.22268.

PMID:
18951392
50.

Structure of the human voltage-dependent anion channel.

Bayrhuber M, Meins T, Habeck M, Becker S, Giller K, Villinger S, Vonrhein C, Griesinger C, Zweckstetter M, Zeth K.

Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15370-5. doi: 10.1073/pnas.0808115105. Epub 2008 Oct 1.

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