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Screening and isolation of the liamocin-producing yeast Aureobasidium melanogenum using xylose as the sole carbon source.

Saika A, Fukuoka T, Mikome S, Kondo Y, Habe H, Morita T.

J Biosci Bioeng. 2019 Nov 12. pii: S1389-1723(19)30797-2. doi: 10.1016/j.jbiosc.2019.10.010. [Epub ahead of print]


Evaluation of Yield and Surface Tension-lowering Activity of Iturin A Produced by Bacillus subtilis RB14.

Habe H, Taira T, Sato Y, Imura T, Ano T.

J Oleo Sci. 2019 Nov 7;68(11):1157-1162. doi: 10.5650/jos.ess19182. Epub 2019 Oct 15.


Identification and characterization of levulinyl-CoA synthetase from Pseudomonas citronellolis, which differs phylogenetically from LvaE of Pseudomonas putida.

Habe H, Koike H, Sato Y, Iimura Y, Hori T, Kanno M, Kimura N, Kirimura K.

AMB Express. 2019 Aug 13;9(1):127. doi: 10.1186/s13568-019-0853-y.


Desulfosporosinus spp. were the most predominant sulfate-reducing bacteria in pilot- and laboratory-scale passive bioreactors for acid mine drainage treatment.

Sato Y, Hamai T, Hori T, Aoyagi T, Inaba T, Kobayashi M, Habe H, Sakata T.

Appl Microbiol Biotechnol. 2019 Sep;103(18):7783-7793. doi: 10.1007/s00253-019-10063-2. Epub 2019 Aug 6.


Transcriptome analysis of activated sludge microbiomes reveals an unexpected role of minority nitrifiers in carbon metabolism.

Sato Y, Hori T, Koike H, Navarro RR, Ogata A, Habe H.

Commun Biol. 2019 May 13;2:179. doi: 10.1038/s42003-019-0418-2. eCollection 2019.


Synthesis and Characterization of a Novel Glycolipid with Glucosylglycerate as a Hydrophile Showing Protective Effects on Heat-induced Protein Denaturation.

Sato S, Kishimoto A, Kitamoto D, Takahashi Y, Kondo Y, Habe H.

J Oleo Sci. 2019 May 1;68(5):493-499. doi: 10.5650/jos.ess19044. Epub 2019 Apr 9.


Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome.

Narihiro T, Nobu MK, Hori T, Aoyagi T, Sato Y, Inaba T, Aizawa H, Tamaki H, Habe H.

Microbes Environ. 2019 Mar 30;34(1):89-94. doi: 10.1264/jsme2.ME18108. Epub 2018 Dec 22.


Draft Genome Sequence of Pseudomonas citronellolis LA18T, a Bacterium That Uses Levulinic Acid.

Inaba T, Sato Y, Koike H, Hori T, Kanno M, Kimura N, Kirimura K, Habe H.

Microbiol Resour Announc. 2018 Aug 9;7(5). pii: e00906-18. doi: 10.1128/MRA.00906-18. eCollection 2018 Aug.


Microbiomes and chemical components of feed water and membrane-attached biofilm in reverse osmosis system to treat membrane bioreactor effluents.

Inaba T, Hori T, Aizawa H, Sato Y, Ogata A, Habe H.

Sci Rep. 2018 Nov 14;8(1):16805. doi: 10.1038/s41598-018-35156-2.


Application of Glycolipid Biosurfactants as Surface Modifiers in Bioplastics.

Fukuoka T, Morita T, Saika A, Habe H.

J Oleo Sci. 2018 Dec 1;67(12):1609-1616. doi: 10.5650/jos.ess18116. Epub 2018 Nov 15.


Surface Activity and Ca2+-Dependent Aggregation Property of Lichenysin Produced by Bacillus licheniformis NBRC 104464.

Habe H, Taira T, Imura T.

J Oleo Sci. 2018;67(10):1307-1313. doi: 10.5650/jos.ess18107.


Nitrifiers activity and community characteristics under stress conditions in partial nitrification systems treating ammonium-rich wastewater.

Miao J, Yin Q, Hori T, Aoyagi T, Habe H, Wu G.

J Environ Sci (China). 2018 Nov;73:1-8. doi: 10.1016/j.jes.2017.12.020. Epub 2018 Jan 4.


Activated sludge microbial communities of a chemical plant wastewater treatment facility with high-strength bromide ions and aromatic substances.

Zhao YJ, Sato Y, Inaba T, Aoyagi T, Hori T, Habe H.

J Gen Appl Microbiol. 2019 May 21;65(2):106-110. doi: 10.2323/jgam.2018.05.002. Epub 2018 Jul 31.


Identification of active and taxonomically diverse 1,4-dioxane degraders in a full-scale activated sludge system by high-sensitivity stable isotope probing.

Aoyagi T, Morishita F, Sugiyama Y, Ichikawa D, Mayumi D, Kikuchi Y, Ogata A, Muraoka K, Habe H, Hori T.

ISME J. 2018 Oct;12(10):2376-2388. doi: 10.1038/s41396-018-0201-2. Epub 2018 Jun 13.


Eukaryotic Microbiomes of Membrane-Attached Biofilms in Membrane Bioreactors Analyzed by High-Throughput Sequencing and Microscopic Observations.

Inaba T, Hori T, Sato Y, Aoyagi T, Hanajima D, Ogata A, Habe H.

Microbes Environ. 2018 Mar 29;33(1):98-101. doi: 10.1264/jsme2.ME17112. Epub 2017 Dec 12.


Heterologous expression of Trametes versicolor laccase in Saccharomyces cerevisiae.

Iimura Y, Sonoki T, Habe H.

Protein Expr Purif. 2018 Jan;141:39-43. doi: 10.1016/j.pep.2017.09.004. Epub 2017 Sep 13.


Hydraulic retention time and pH affect the performance and microbial communities of passive bioreactors for treatment of acid mine drainage.

Aoyagi T, Hamai T, Hori T, Sato Y, Kobayashi M, Sato Y, Inaba T, Ogata A, Habe H, Sakata T.

AMB Express. 2017 Dec;7(1):142. doi: 10.1186/s13568-017-0440-z. Epub 2017 Jun 27.


Architecture, component, and microbiome of biofilm involved in the fouling of membrane bioreactors.

Inaba T, Hori T, Aizawa H, Ogata A, Habe H.

NPJ Biofilms Microbiomes. 2017 Feb 23;3:5. doi: 10.1038/s41522-016-0010-1. eCollection 2017.


Draft Genome Sequence of Geobacter pelophilus Strain Dfr2, a Ferric Iron-Reducing Bacterium.

Aoyagi T, Koike H, Morita T, Sato Y, Habe H, Hori T.

Genome Announc. 2017 Jun 15;5(24). pii: e00537-17. doi: 10.1128/genomeA.00537-17.


Preliminary Evaluation of Glyceric Acid-producing Ability of Acidomonas methanolica NBRC104435 from Glycerol Containing Methanol.

Sato S, Kitamoto D, Habe H.

J Oleo Sci. 2017 Jun 1;66(6):653-658. doi: 10.5650/jos.ess16236. Epub 2017 May 17.


Electrodialytic separation of levulinic acid catalytically synthesized from woody biomass for use in microbial conversion.

Habe H, Kondo S, Sato Y, Hori T, Kanno M, Kimura N, Koike H, Kirimura K.

Biotechnol Prog. 2017 Mar;33(2):448-453. doi: 10.1002/btpr.2425. Epub 2017 Jan 10.


Draft Genome Sequence of Burkholderia stabilis LA20W, a Trehalose Producer That Uses Levulinic Acid as a Substrate.

Sato Y, Koike H, Kondo S, Hori T, Kanno M, Kimura N, Morita T, Kirimura K, Habe H.

Genome Announc. 2016 Aug 4;4(4). pii: e00795-16. doi: 10.1128/genomeA.00795-16.


Effects of Organic-Loading-Rate Reduction on Sludge Biomass and Microbial Community in a Deteriorated Pilot-Scale Membrane Bioreactor.

Sato Y, Hori T, Navarro RR, Naganawa R, Habe H, Ogata A.

Microbes Environ. 2016 Sep 29;31(3):361-4. doi: 10.1264/jsme2.ME16015. Epub 2016 Jul 12.


Functional maintenance and structural flexibility of microbial communities perturbed by simulated intense rainfall in a pilot-scale membrane bioreactor.

Sato Y, Hori T, Navarro RR, Habe H, Ogata A.

Appl Microbiol Biotechnol. 2016 Jul;100(14):6447-56. doi: 10.1007/s00253-016-7466-z. Epub 2016 Mar 28.


High-resolution phylogenetic analysis of residual bacterial species of fouled membranes after NaOCl cleaning.

Navarro RR, Hori T, Inaba T, Matsuo K, Habe H, Ogata A.

Water Res. 2016 May 1;94:166-175. doi: 10.1016/j.watres.2016.02.044. Epub 2016 Feb 22.


Synthesis and Characterization of Dioctanoyl Glycerate as Water-soluble Trypsin Inhibitor.

Sato S, Nagata S, Imura T, Fukuoka T, Morita T, Takahashi Y, Kondo Y, Kitamoto D, Habe H.

J Oleo Sci. 2016;65(3):251-6. doi: 10.5650/jos.ess15189. Epub 2016 Feb 15.


Fine-scale monitoring of shifts in microbial community composition after high organic loading in a pilot-scale membrane bioreactor.

Sato Y, Hori T, Navarro RR, Habe H, Yanagishita H, Ogata A.

J Biosci Bioeng. 2016 May;121(5):550-6. doi: 10.1016/j.jbiosc.2015.10.003. Epub 2015 Nov 2.


Isolation and characterization of bacterial strains with the ability to utilize high concentrations of levulinic acid, a platform chemical from inedible biomass.

Habe H, Sato S, Morita T, Fukuoka T, Kirimura K, Kitamoto D.

Biosci Biotechnol Biochem. 2015;79(9):1552-5. doi: 10.1080/09168451.2015.1031076. Epub 2015 Apr 8.


Draft Genome Sequence of the Yeast Starmerella bombicola NBRC10243, a Producer of Sophorolipids, Glycolipid Biosurfactants.

Matsuzawa T, Koike H, Saika A, Fukuoka T, Sato S, Habe H, Kitamoto D, Morita T.

Genome Announc. 2015 Mar 26;3(2). pii: e00176-15. doi: 10.1128/genomeA.00176-15.


Draft Genome Sequence of Acetobacter tropicalis Type Strain NBRC16470, a Producer of Optically Pure d-Glyceric Acid.

Koike H, Sato S, Morita T, Fukuoka T, Habe H.

Genome Announc. 2014 Dec 18;2(6). pii: e01329-14. doi: 10.1128/genomeA.01329-14.


Bacterial production of short-chain organic acids and trehalose from levulinic acid: a potential cellulose-derived building block as a feedstock for microbial production.

Habe H, Sato S, Morita T, Fukuoka T, Kirimura K, Kitamoto D.

Bioresour Technol. 2015 Feb;177:381-6. doi: 10.1016/j.biortech.2014.11.048. Epub 2014 Nov 18.


Microbial resolution of DL-glyceric acid for L-glyceric acid production with newly isolated bacterial strains.

Sato S, Morita T, Fukuoka T, Kitamoto D, Habe H.

J Biosci Bioeng. 2015 May;119(5):554-7. doi: 10.1016/j.jbiosc.2014.10.016. Epub 2014 Nov 15.


Draft Genome Sequence of the Yeast Pseudozyma antarctica Type Strain JCM10317, a Producer of the Glycolipid Biosurfactants, Mannosylerythritol Lipids.

Saika A, Koike H, Hori T, Fukuoka T, Sato S, Habe H, Kitamoto D, Morita T.

Genome Announc. 2014 Sep 25;2(5). pii: e00878-14. doi: 10.1128/genomeA.00878-14.


In vitro evaluation of glyceric acid and its glucosyl derivative, α-glucosylglyceric acid, as cell proliferation inducers and protective solutes.

Sato S, Kitamoto D, Habe H.

Biosci Biotechnol Biochem. 2014;78(7):1183-6. doi: 10.1080/09168451.2014.885823.


Genome and transcriptome analysis of the basidiomycetous yeast Pseudozyma antarctica producing extracellular glycolipids, mannosylerythritol lipids.

Morita T, Koike H, Hagiwara H, Ito E, Machida M, Sato S, Habe H, Kitamoto D.

PLoS One. 2014 Feb 24;9(2):e86490. doi: 10.1371/journal.pone.0086490. eCollection 2014.


Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.

Inoue K, Usami Y, Ashikawa Y, Noguchi H, Umeda T, Yamagami-Ashikawa A, Horisaki T, Uchimura H, Terada T, Nakamura S, Shimizu K, Habe H, Yamane H, Fujimoto Z, Nojiri H.

Appl Environ Microbiol. 2014 May;80(9):2821-32. doi: 10.1128/AEM.04000-13. Epub 2014 Feb 28.


Production of mannitol from raw glycerol by Candida azyma.

Yoshikawa J, Habe H, Morita T, Fukuoka T, Imura T, Iwabuchi H, Uemura S, Tamura T, Kitamoto D.

J Biosci Bioeng. 2014 Jun;117(6):725-9. doi: 10.1016/j.jbiosc.2013.11.016. Epub 2013 Dec 25.


Production of D-arabitol from raw glycerol by Candida quercitrusa.

Yoshikawa J, Habe H, Morita T, Fukuoka T, Imura T, Iwabuchi H, Uemura S, Tamura T, Kitamoto D.

Appl Microbiol Biotechnol. 2014 Apr;98(7):2947-53. doi: 10.1007/s00253-013-5449-x. Epub 2013 Dec 19.


Chemical mutagenesis of Gluconobacter frateurii to construct methanol-resistant mutants showing glyceric acid production from methanol-containing glycerol.

Sato S, Kitamoto D, Habe H.

J Biosci Bioeng. 2014 Feb;117(2):197-199. doi: 10.1016/j.jbiosc.2013.07.004. Epub 2013 Aug 2.


Draft Genome Sequence of Gluconobacter frateurii NBRC 103465, a Glyceric Acid-Producing Strain.

Sato S, Umemura M, Koike H, Habe H.

Genome Announc. 2013 Jul 25;1(4). pii: e00369-13. doi: 10.1128/genomeA.00369-13.


Change in product selectivity during the production of glyceric acid from glycerol by Gluconobacter strains in the presence of methanol.

Sato S, Morita N, Kitamoto D, Yakushi T, Matsushita K, Habe H.

AMB Express. 2013 Apr 2;3(1):20. doi: 10.1186/2191-0855-3-20.


Cloning of dfdA genes from Terrabacter sp. strain DBF63 encoding dibenzofuran 4,4a-dioxygenase and heterologous expression in Streptomyces lividans.

Kasuga K, Nitta A, Kobayashi M, Habe H, Nojiri H, Yamane H, Omori T, Kojima I.

Appl Microbiol Biotechnol. 2013 May;97(10):4485-98. doi: 10.1007/s00253-012-4565-3. Epub 2012 Nov 23.


Synthesis and interfacial properties of monoacyl glyceric acids as a new class of green surfactants.

Fukuoka T, Ikeda S, Habe H, Sato S, Sakai H, Abe M, Kitamoto D, Sakaki K.

J Oleo Sci. 2012;61(6):343-8.


Stepwise synthesis of 2,3-O-dipalmitoyl-D-glyceric acid and an in vitro evaluation of its cytotoxicity.

Sato S, Habe H, Fukuoka T, Kitamoto D, Sakaki K.

J Oleo Sci. 2012;61(6):337-41.


Effect of glyceric acid calcium salt on the viability of ethanol-dosed gastric cells.

Habe H, Sato S, Fukuoka T, Kitamoto D, Sakaki K.

J Oleo Sci. 2011;60(11):585-90.

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